Wall clock time and date at job start Mon Mar 30 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47693 * 2 1 4 4 H 1.09008 * 109.47201 * 305.00126 * 3 2 1 5 5 N 1.46900 * 109.47010 * 64.99871 * 3 2 1 6 6 C 1.50694 * 109.47511 * 185.00215 * 3 2 1 7 7 C 1.38336 * 119.91027 * 279.72506 * 6 3 2 8 8 C 1.38043 * 120.09252 * 179.76340 * 7 6 3 9 9 C 1.39087 * 119.91057 * 0.50877 * 8 7 6 10 10 N 1.39290 * 120.09023 * 179.76728 * 9 8 7 11 11 C 1.36846 * 120.00301 * 359.97438 * 10 9 8 12 12 H 1.08001 * 119.99869 * 323.83986 * 11 10 9 13 13 C 1.38793 * 120.00558 * 143.83848 * 11 10 9 14 14 N 1.31587 * 120.00321 * 154.54114 * 13 11 10 15 15 Si 1.86806 * 119.99689 * 334.54834 * 13 11 10 16 16 H 1.48495 * 109.47317 * 94.46367 * 15 13 11 17 17 H 1.48503 * 109.46761 * 214.46841 * 15 13 11 18 18 H 1.48502 * 109.46698 * 334.46178 * 15 13 11 19 19 C 1.46506 * 119.99948 * 179.97438 * 10 9 8 20 20 C 1.47201 * 109.47150 * 88.43220 * 19 10 9 21 21 N 8.57060 * 146.36537 * 334.17354 * 2 1 3 22 22 C 1.39083 * 119.81810 * 359.74810 * 9 8 7 23 23 C 1.38053 * 119.90718 * 359.97438 * 22 9 8 24 24 H 1.09004 * 109.46800 * 59.99430 * 1 2 3 25 25 H 1.08996 * 109.46819 * 300.00637 * 1 2 3 26 26 H 1.08997 * 109.47905 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46800 * 120.00570 * 2 1 3 28 28 H 1.09002 * 109.46848 * 240.00081 * 2 1 3 29 29 H 1.00900 * 111.00122 * 296.04531 * 5 3 2 30 30 H 1.00895 * 111.00226 * 60.00132 * 5 3 2 31 31 H 1.08000 * 119.94874 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.04744 * 180.25357 * 8 7 6 33 33 H 0.97001 * 120.00226 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47192 * 208.43433 * 19 10 9 35 35 H 1.08998 * 109.46922 * 328.43119 * 19 10 9 36 36 H 1.08001 * 120.04513 * 179.97438 * 22 9 8 37 37 H 1.08001 * 119.94962 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6515 2.0992 1.2552 6 6 3.5420 1.4441 -0.1239 7 6 4.3263 1.2081 0.9909 8 6 5.7024 1.2040 0.8808 9 6 6.3002 1.4481 -0.3511 10 7 7.6884 1.4497 -0.4655 11 6 8.4660 1.2113 0.6350 12 1 8.1601 1.5809 1.6027 13 6 9.6478 0.4947 0.5079 14 7 10.6212 0.6716 1.3755 15 14 9.8565 -0.7210 -0.8951 16 1 10.5409 -0.0530 -2.0311 17 1 10.6720 -1.8733 -0.4342 18 1 8.5225 -1.2029 -1.3349 19 6 8.3161 1.7065 -1.7642 20 6 8.5135 3.1550 -1.9359 21 7 8.6658 4.2730 -2.0681 22 6 5.5082 1.6903 -1.4684 23 6 4.1327 1.6869 -1.3509 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 0.6478 2.1684 1.3315 30 1 2.0423 1.6179 2.0512 31 1 3.8613 1.0234 1.9480 32 1 6.3140 1.0156 1.7507 33 1 11.4470 0.1704 1.2869 34 1 9.2806 1.2006 -1.8079 35 1 7.6724 1.3307 -2.5594 36 1 5.9686 1.8806 -2.4266 37 1 3.5169 1.8744 -2.2181 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233888343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:08 Heat of formation + Delta-G solvation = 50.311602 kcal Electronic energy + Delta-G solvation = -18798.863594 eV Core-core repulsion = 15961.713349 eV Total energy + Delta-G solvation = -2837.150245 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67361 -38.83555 -37.28879 -36.24745 -34.09837 -31.89080 -31.68554 -30.56861 -29.18513 -26.78883 -24.85381 -23.33171 -22.35792 -20.86185 -20.00350 -18.72649 -18.05157 -17.32424 -16.80700 -16.11288 -15.67244 -15.26161 -15.23645 -15.14690 -14.97827 -14.53079 -14.39906 -14.11935 -13.89567 -13.70052 -13.46203 -13.21342 -13.06927 -12.93678 -12.65839 -12.26737 -12.17418 -11.79747 -11.73576 -11.60509 -11.39250 -11.09140 -10.46386 -9.57793 -9.47042 -8.46829 -8.32482 -5.92987 0.81059 0.87735 1.25702 1.40938 1.53082 1.58102 1.75039 2.23957 2.77614 2.98599 3.00410 3.38009 3.87019 4.02172 4.10023 4.17371 4.24037 4.27188 4.32239 4.42787 4.66767 4.71901 4.81804 4.92507 5.05077 5.09348 5.20381 5.29593 5.33770 5.43895 5.60763 5.72445 5.90734 5.99669 6.04585 6.35686 6.40829 6.49692 6.70221 6.75889 7.25606 7.51087 8.68898 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.024765 B = 0.005487 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.366086 B = 5101.868306 C = 5500.384852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.150 4.150 3 C 0.150 3.850 4 H 0.086 0.914 5 N -0.850 5.850 6 C -0.159 4.159 7 C -0.061 4.061 8 C -0.209 4.209 9 C 0.195 3.805 10 N -0.489 5.489 11 C -0.323 4.323 12 H 0.059 0.941 13 C 0.011 3.989 14 N -0.910 5.910 15 Si 0.923 3.077 16 H -0.243 1.243 17 H -0.291 1.291 18 H -0.240 1.240 19 C 0.192 3.808 20 C 0.220 3.780 21 N -0.480 5.480 22 C -0.225 4.225 23 C -0.066 4.066 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.348 0.652 30 H 0.340 0.660 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.278 0.722 34 H 0.107 0.893 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.667 -5.130 -6.612 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.189 4.189 3 C 0.039 3.961 4 H 0.104 0.896 5 N -0.381 5.381 6 C -0.162 4.162 7 C -0.080 4.080 8 C -0.232 4.232 9 C 0.089 3.911 10 N -0.187 5.187 11 C -0.451 4.451 12 H 0.076 0.924 13 C -0.191 4.191 14 N -0.546 5.546 15 Si 0.745 3.255 16 H -0.169 1.169 17 H -0.217 1.217 18 H -0.163 1.163 19 C 0.065 3.935 20 C -0.099 4.099 21 N -0.159 5.159 22 C -0.248 4.248 23 C -0.085 4.085 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.163 0.837 30 H 0.154 0.846 31 H 0.139 0.861 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.170 0.830 36 H 0.148 0.852 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.637 -2.877 -6.999 17.372 hybrid contribution 0.514 -1.711 0.558 1.871 sum -15.123 -4.588 -6.441 17.066 Atomic orbital electron populations 1.21784 0.94468 1.02208 1.02243 1.22294 0.96805 0.97549 1.02299 1.20104 0.90056 0.92617 0.93328 0.89609 1.58917 1.16532 1.58664 1.04021 1.19577 0.95268 1.07917 0.93434 1.20648 0.91830 0.97166 0.98369 1.20695 0.95250 1.10743 0.96502 1.18350 0.83175 0.94844 0.94704 1.42138 1.01489 1.68536 1.06522 1.18600 1.03553 1.34392 0.88525 0.92372 1.26077 0.94460 0.98090 1.00508 1.69987 1.04687 1.39705 1.40236 0.86195 0.80193 0.79442 0.79621 1.16869 1.21748 1.16280 1.19683 1.01933 0.82024 0.89890 1.30648 0.91493 0.96353 0.91377 1.81023 1.10632 1.13983 1.10270 1.20764 0.94325 1.12666 0.97074 1.20839 0.93407 0.96901 0.97367 0.92037 0.92241 0.92246 0.92713 0.91835 0.83727 0.84586 0.86065 0.88274 0.91283 0.87609 0.83009 0.85234 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.68 71.98 0.70 -1.36 16 2 C -0.15 -2.78 5.56 30.59 0.17 -2.61 16 3 C 0.15 3.26 3.04 44.16 0.13 3.40 16 4 H 0.09 1.76 8.00 -2.38 -0.02 1.74 16 5 N -0.85 -17.50 9.00 -171.81 -1.55 -19.05 16 6 C -0.16 -4.60 4.96 -19.82 -0.10 -4.70 16 7 C -0.06 -2.03 9.29 22.25 0.21 -1.82 16 8 C -0.21 -8.51 9.26 22.43 0.21 -8.30 16 9 C 0.19 7.91 6.51 38.36 0.25 8.16 16 10 N -0.49 -21.46 2.26 -521.69 -1.18 -22.63 16 11 C -0.32 -16.86 8.94 84.04 0.75 -16.11 16 12 H 0.06 3.46 6.93 -2.91 -0.02 3.44 16 13 C 0.01 0.57 5.24 84.86 0.44 1.02 16 14 N -0.91 -51.23 13.97 21.65 0.30 -50.93 16 15 Si 0.92 37.40 25.25 68.60 1.73 39.13 16 16 H -0.24 -8.69 6.59 99.48 0.66 -8.04 16 17 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 18 H -0.24 -9.12 7.11 99.48 0.71 -8.41 16 19 C 0.19 6.98 4.38 84.57 0.37 7.35 16 20 C 0.22 8.79 15.77 89.44 1.41 10.20 16 21 N -0.48 -20.80 18.54 20.01 0.37 -20.43 16 22 C -0.23 -7.51 9.20 22.43 0.21 -7.31 16 23 C -0.07 -1.92 9.66 22.25 0.21 -1.70 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.72 6.87 -2.39 -0.02 0.70 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.35 5.48 7.55 -89.69 -0.68 4.80 16 30 H 0.34 6.85 7.33 -89.70 -0.66 6.19 16 31 H 0.12 3.49 6.64 -2.91 -0.02 3.47 16 32 H 0.10 4.50 6.42 -2.91 -0.02 4.48 16 33 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.11 3.91 3.37 -2.39 -0.01 3.90 16 35 H 0.15 4.09 6.28 -2.39 -0.01 4.08 16 36 H 0.13 3.70 6.18 -2.91 -0.02 3.68 16 37 H 0.14 3.12 8.03 -2.91 -0.02 3.09 16 Total: -1.00 -62.77 305.79 4.37 -58.39 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -0.27 Total: 29.30 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.97 Total: -13.78 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -2.05 Total: -113.04 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 1.73 Total: 39.13 kcal Total: -62.77 4.37 -58.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233888343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.705 kcal (2) G-P(sol) polarization free energy of solvation -62.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds