Wall clock time and date at job start Mon Mar 30 2020 05:23:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52992 * 109.47693 * 2 1
4 4 H 1.09008 * 109.47201 * 305.00126 * 3 2 1
5 5 N 1.46900 * 109.47010 * 64.99871 * 3 2 1
6 6 C 1.50694 * 109.47511 * 185.00215 * 3 2 1
7 7 C 1.38336 * 119.91027 * 279.72506 * 6 3 2
8 8 C 1.38043 * 120.09252 * 179.76340 * 7 6 3
9 9 C 1.39087 * 119.91057 * 0.50877 * 8 7 6
10 10 N 1.39290 * 120.09023 * 179.76728 * 9 8 7
11 11 C 1.36846 * 120.00301 * 359.97438 * 10 9 8
12 12 H 1.08001 * 119.99869 * 323.83986 * 11 10 9
13 13 C 1.38793 * 120.00558 * 143.83848 * 11 10 9
14 14 N 1.31587 * 120.00321 * 154.54114 * 13 11 10
15 15 Si 1.86806 * 119.99689 * 334.54834 * 13 11 10
16 16 H 1.48495 * 109.47317 * 94.46367 * 15 13 11
17 17 H 1.48503 * 109.46761 * 214.46841 * 15 13 11
18 18 H 1.48502 * 109.46698 * 334.46178 * 15 13 11
19 19 C 1.46506 * 119.99948 * 179.97438 * 10 9 8
20 20 C 1.47201 * 109.47150 * 88.43220 * 19 10 9
21 21 N 8.57060 * 146.36537 * 334.17354 * 2 1 3
22 22 C 1.39083 * 119.81810 * 359.74810 * 9 8 7
23 23 C 1.38053 * 119.90718 * 359.97438 * 22 9 8
24 24 H 1.09004 * 109.46800 * 59.99430 * 1 2 3
25 25 H 1.08996 * 109.46819 * 300.00637 * 1 2 3
26 26 H 1.08997 * 109.47905 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.46800 * 120.00570 * 2 1 3
28 28 H 1.09002 * 109.46848 * 240.00081 * 2 1 3
29 29 H 1.00900 * 111.00122 * 296.04531 * 5 3 2
30 30 H 1.00895 * 111.00226 * 60.00132 * 5 3 2
31 31 H 1.08000 * 119.94874 * 359.97438 * 7 6 3
32 32 H 1.08001 * 120.04744 * 180.25357 * 8 7 6
33 33 H 0.97001 * 120.00226 * 179.97438 * 14 13 11
34 34 H 1.08997 * 109.47192 * 208.43433 * 19 10 9
35 35 H 1.08998 * 109.46922 * 328.43119 * 19 10 9
36 36 H 1.08001 * 120.04513 * 179.97438 * 22 9 8
37 37 H 1.08001 * 119.94962 * 180.02562 * 23 22 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9815 -0.8419
5 7 1.6515 2.0992 1.2552
6 6 3.5420 1.4441 -0.1239
7 6 4.3263 1.2081 0.9909
8 6 5.7024 1.2040 0.8808
9 6 6.3002 1.4481 -0.3511
10 7 7.6884 1.4497 -0.4655
11 6 8.4660 1.2113 0.6350
12 1 8.1601 1.5809 1.6027
13 6 9.6478 0.4947 0.5079
14 7 10.6212 0.6716 1.3755
15 14 9.8565 -0.7210 -0.8951
16 1 10.5409 -0.0530 -2.0311
17 1 10.6720 -1.8733 -0.4342
18 1 8.5225 -1.2029 -1.3349
19 6 8.3161 1.7065 -1.7642
20 6 8.5135 3.1550 -1.9359
21 7 8.6658 4.2730 -2.0681
22 6 5.5082 1.6903 -1.4684
23 6 4.1327 1.6869 -1.3509
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3633 0.5139 0.8899
26 1 -0.3635 -1.0276 -0.0005
27 1 1.8933 -0.5139 0.8900
28 1 1.8933 -0.5138 -0.8900
29 1 0.6478 2.1684 1.3315
30 1 2.0423 1.6179 2.0512
31 1 3.8613 1.0234 1.9480
32 1 6.3140 1.0156 1.7507
33 1 11.4470 0.1704 1.2869
34 1 9.2806 1.2006 -1.8079
35 1 7.6724 1.3307 -2.5594
36 1 5.9686 1.8806 -2.4266
37 1 3.5169 1.8744 -2.2181
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000233888343.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:08
Heat of formation + Delta-G solvation = 50.311602 kcal
Electronic energy + Delta-G solvation = -18798.863594 eV
Core-core repulsion = 15961.713349 eV
Total energy + Delta-G solvation = -2837.150245 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.138 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.67361 -38.83555 -37.28879 -36.24745 -34.09837 -31.89080 -31.68554 -30.56861
-29.18513 -26.78883 -24.85381 -23.33171 -22.35792 -20.86185 -20.00350 -18.72649
-18.05157 -17.32424 -16.80700 -16.11288 -15.67244 -15.26161 -15.23645 -15.14690
-14.97827 -14.53079 -14.39906 -14.11935 -13.89567 -13.70052 -13.46203 -13.21342
-13.06927 -12.93678 -12.65839 -12.26737 -12.17418 -11.79747 -11.73576 -11.60509
-11.39250 -11.09140 -10.46386 -9.57793 -9.47042 -8.46829 -8.32482 -5.92987
0.81059 0.87735 1.25702 1.40938 1.53082 1.58102 1.75039 2.23957
2.77614 2.98599 3.00410 3.38009 3.87019 4.02172 4.10023 4.17371
4.24037 4.27188 4.32239 4.42787 4.66767 4.71901 4.81804 4.92507
5.05077 5.09348 5.20381 5.29593 5.33770 5.43895 5.60763 5.72445
5.90734 5.99669 6.04585 6.35686 6.40829 6.49692 6.70221 6.75889
7.25606 7.51087 8.68898
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.024765 B = 0.005487 C = 0.005089
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1130.366086 B = 5101.868306 C = 5500.384852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.150 4.150
3 C 0.150 3.850
4 H 0.086 0.914
5 N -0.850 5.850
6 C -0.159 4.159
7 C -0.061 4.061
8 C -0.209 4.209
9 C 0.195 3.805
10 N -0.489 5.489
11 C -0.323 4.323
12 H 0.059 0.941
13 C 0.011 3.989
14 N -0.910 5.910
15 Si 0.923 3.077
16 H -0.243 1.243
17 H -0.291 1.291
18 H -0.240 1.240
19 C 0.192 3.808
20 C 0.220 3.780
21 N -0.480 5.480
22 C -0.225 4.225
23 C -0.066 4.066
24 H 0.061 0.939
25 H 0.059 0.941
26 H 0.058 0.942
27 H 0.054 0.946
28 H 0.063 0.937
29 H 0.348 0.652
30 H 0.340 0.660
31 H 0.121 0.879
32 H 0.099 0.901
33 H 0.278 0.722
34 H 0.107 0.893
35 H 0.153 0.847
36 H 0.130 0.870
37 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.667 -5.130 -6.612 18.650
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.189 4.189
3 C 0.039 3.961
4 H 0.104 0.896
5 N -0.381 5.381
6 C -0.162 4.162
7 C -0.080 4.080
8 C -0.232 4.232
9 C 0.089 3.911
10 N -0.187 5.187
11 C -0.451 4.451
12 H 0.076 0.924
13 C -0.191 4.191
14 N -0.546 5.546
15 Si 0.745 3.255
16 H -0.169 1.169
17 H -0.217 1.217
18 H -0.163 1.163
19 C 0.065 3.935
20 C -0.099 4.099
21 N -0.159 5.159
22 C -0.248 4.248
23 C -0.085 4.085
24 H 0.080 0.920
25 H 0.078 0.922
26 H 0.078 0.922
27 H 0.073 0.927
28 H 0.082 0.918
29 H 0.163 0.837
30 H 0.154 0.846
31 H 0.139 0.861
32 H 0.117 0.883
33 H 0.087 0.913
34 H 0.124 0.876
35 H 0.170 0.830
36 H 0.148 0.852
37 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -15.637 -2.877 -6.999 17.372
hybrid contribution 0.514 -1.711 0.558 1.871
sum -15.123 -4.588 -6.441 17.066
Atomic orbital electron populations
1.21784 0.94468 1.02208 1.02243 1.22294 0.96805 0.97549 1.02299
1.20104 0.90056 0.92617 0.93328 0.89609 1.58917 1.16532 1.58664
1.04021 1.19577 0.95268 1.07917 0.93434 1.20648 0.91830 0.97166
0.98369 1.20695 0.95250 1.10743 0.96502 1.18350 0.83175 0.94844
0.94704 1.42138 1.01489 1.68536 1.06522 1.18600 1.03553 1.34392
0.88525 0.92372 1.26077 0.94460 0.98090 1.00508 1.69987 1.04687
1.39705 1.40236 0.86195 0.80193 0.79442 0.79621 1.16869 1.21748
1.16280 1.19683 1.01933 0.82024 0.89890 1.30648 0.91493 0.96353
0.91377 1.81023 1.10632 1.13983 1.10270 1.20764 0.94325 1.12666
0.97074 1.20839 0.93407 0.96901 0.97367 0.92037 0.92241 0.92246
0.92713 0.91835 0.83727 0.84586 0.86065 0.88274 0.91283 0.87609
0.83009 0.85234 0.84294
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.06 9.68 71.98 0.70 -1.36 16
2 C -0.15 -2.78 5.56 30.59 0.17 -2.61 16
3 C 0.15 3.26 3.04 44.16 0.13 3.40 16
4 H 0.09 1.76 8.00 -2.38 -0.02 1.74 16
5 N -0.85 -17.50 9.00 -171.81 -1.55 -19.05 16
6 C -0.16 -4.60 4.96 -19.82 -0.10 -4.70 16
7 C -0.06 -2.03 9.29 22.25 0.21 -1.82 16
8 C -0.21 -8.51 9.26 22.43 0.21 -8.30 16
9 C 0.19 7.91 6.51 38.36 0.25 8.16 16
10 N -0.49 -21.46 2.26 -521.69 -1.18 -22.63 16
11 C -0.32 -16.86 8.94 84.04 0.75 -16.11 16
12 H 0.06 3.46 6.93 -2.91 -0.02 3.44 16
13 C 0.01 0.57 5.24 84.86 0.44 1.02 16
14 N -0.91 -51.23 13.97 21.65 0.30 -50.93 16
15 Si 0.92 37.40 25.25 68.60 1.73 39.13 16
16 H -0.24 -8.69 6.59 99.48 0.66 -8.04 16
17 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16
18 H -0.24 -9.12 7.11 99.48 0.71 -8.41 16
19 C 0.19 6.98 4.38 84.57 0.37 7.35 16
20 C 0.22 8.79 15.77 89.44 1.41 10.20 16
21 N -0.48 -20.80 18.54 20.01 0.37 -20.43 16
22 C -0.23 -7.51 9.20 22.43 0.21 -7.31 16
23 C -0.07 -1.92 9.66 22.25 0.21 -1.70 16
24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
25 H 0.06 0.72 6.87 -2.39 -0.02 0.70 16
26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
29 H 0.35 5.48 7.55 -89.69 -0.68 4.80 16
30 H 0.34 6.85 7.33 -89.70 -0.66 6.19 16
31 H 0.12 3.49 6.64 -2.91 -0.02 3.47 16
32 H 0.10 4.50 6.42 -2.91 -0.02 4.48 16
33 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16
34 H 0.11 3.91 3.37 -2.39 -0.01 3.90 16
35 H 0.15 4.09 6.28 -2.39 -0.01 4.08 16
36 H 0.13 3.70 6.18 -2.91 -0.02 3.68 16
37 H 0.14 3.12 8.03 -2.91 -0.02 3.09 16
Total: -1.00 -62.77 305.79 4.37 -58.39
By element:
Atomic # 1 Polarization: 29.57 SS G_CDS: -0.27 Total: 29.30 kcal
Atomic # 6 Polarization: -18.75 SS G_CDS: 4.97 Total: -13.78 kcal
Atomic # 7 Polarization: -110.99 SS G_CDS: -2.05 Total: -113.04 kcal
Atomic # 14 Polarization: 37.40 SS G_CDS: 1.73 Total: 39.13 kcal
Total: -62.77 4.37 -58.39 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000233888343.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.705 kcal
(2) G-P(sol) polarization free energy of solvation -62.768 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.394 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.312 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds