Wall clock time and date at job start Mon Mar 30 2020 04:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46968 * 2 1 4 4 N 1.46899 * 109.47157 * 239.99567 * 2 1 3 5 5 C 1.52999 * 109.46683 * 119.99801 * 2 1 3 6 6 C 1.53007 * 109.46915 * 185.98030 * 5 2 1 7 7 C 1.52992 * 109.38912 * 294.57460 * 6 5 2 8 8 C 1.50703 * 109.47335 * 302.99211 * 7 6 5 9 9 H 1.07998 * 119.99943 * 354.53375 * 8 7 6 10 10 C 1.37877 * 119.99638 * 174.53462 * 8 7 6 11 11 N 1.31511 * 120.00566 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99623 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47360 * 59.99803 * 12 10 8 14 14 H 1.48494 * 109.47365 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46939 * 299.99548 * 12 10 8 16 16 C 1.52579 * 109.30835 * 174.82360 * 6 5 2 17 17 C 1.52583 * 110.72651 * 169.22693 * 16 6 5 18 18 C 1.53097 * 109.95688 * 70.67546 * 17 16 6 19 19 S 1.81750 * 108.83821 * 296.97528 * 18 17 16 20 20 O 1.42100 * 109.46613 * 169.25888 * 19 18 17 21 21 C 1.53097 * 109.38939 * 54.37838 * 6 5 2 22 22 H 1.08997 * 109.47296 * 300.00510 * 1 2 3 23 23 H 1.09005 * 109.46920 * 60.00587 * 1 2 3 24 24 H 1.09002 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.00903 * 110.99837 * 300.00228 * 4 2 1 26 26 H 1.00902 * 110.99851 * 63.95692 * 4 2 1 27 27 H 1.09004 * 109.47410 * 65.98046 * 5 2 1 28 28 H 1.09007 * 109.47171 * 305.97629 * 5 2 1 29 29 H 1.09001 * 109.47102 * 62.99194 * 7 6 5 30 30 H 1.08998 * 109.47499 * 182.98425 * 7 6 5 31 31 H 0.97001 * 120.00442 * 180.02562 * 11 10 8 32 32 H 1.09003 * 109.22628 * 289.54651 * 16 6 5 33 33 H 1.09001 * 109.22531 * 48.90399 * 16 6 5 34 34 H 1.09006 * 109.38898 * 310.52611 * 17 16 6 35 35 H 1.08997 * 109.39033 * 190.82361 * 17 16 6 36 36 H 1.08999 * 109.57420 * 177.17338 * 18 17 16 37 37 H 1.09002 * 109.68246 * 56.84407 * 18 17 16 38 38 H 1.08993 * 109.57778 * 302.88253 * 21 6 5 39 39 H 1.08998 * 109.57451 * 63.14040 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0399 -0.7212 1.2493 6 6 3.5626 -0.5924 1.3268 7 6 4.1959 -1.3393 0.1514 8 6 3.7509 -2.7790 0.1725 9 1 3.1554 -3.1481 0.9944 10 6 4.1041 -3.6249 -0.8574 11 7 4.8288 -3.1753 -1.8585 12 14 3.5519 -5.4093 -0.8315 13 1 2.0682 -5.4681 -0.8117 14 1 4.0590 -6.1020 -2.0431 15 1 4.0900 -6.0764 0.3812 16 6 4.0543 -1.2000 2.6371 17 6 5.5744 -1.3313 2.6346 18 6 6.2188 0.0541 2.7319 19 16 5.7644 1.0174 1.2592 20 8 6.1413 2.3746 1.4463 21 6 3.9517 0.8867 1.2581 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6961 -1.6480 -1.2226 26 1 1.7503 -0.1991 -2.0372 27 1 1.7666 -1.7752 1.1974 28 1 1.5918 -0.2728 2.1361 29 1 3.8832 -0.8761 -0.7845 30 1 5.2818 -1.2934 0.2343 31 1 5.0769 -3.7704 -2.5833 32 1 3.7507 -0.5601 3.4657 33 1 3.6089 -2.1867 2.7647 34 1 5.8943 -1.8152 1.7117 35 1 5.8868 -1.9363 3.4858 36 1 7.3027 -0.0499 2.7802 37 1 5.8605 0.5636 3.6264 38 1 3.5543 1.3268 0.3436 39 1 3.5453 1.4117 2.1226 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259696415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:47 Heat of formation + Delta-G solvation = -45.929336 kcal Electronic energy + Delta-G solvation = -19209.762813 eV Core-core repulsion = 16471.590447 eV Total energy + Delta-G solvation = -2738.172365 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.59636 -35.34711 -34.85159 -32.51590 -31.44369 -28.52352 -27.51512 -26.38406 -25.93084 -22.87357 -21.97099 -19.72819 -18.07358 -16.70652 -16.00945 -15.61457 -15.25198 -14.53213 -14.36135 -14.04768 -13.89346 -13.38199 -13.31960 -12.83868 -12.51283 -12.43912 -12.03429 -11.85423 -11.70037 -11.22505 -11.14100 -10.93360 -10.75047 -10.54169 -10.47975 -10.24913 -10.03915 -10.01428 -9.68055 -9.02177 -8.88467 -8.72241 -8.27041 -7.51012 -7.20553 -5.80920 -3.76372 2.16378 3.16053 3.36891 3.43672 3.46767 4.36271 4.57085 5.21167 5.26746 5.36221 5.51170 5.54788 5.56624 5.59945 5.73035 5.75993 5.87023 6.01783 6.07685 6.13434 6.28458 6.33043 6.36850 6.39960 6.50658 6.73181 6.79082 6.90954 6.95753 7.11644 7.38409 7.88936 8.04146 8.11812 8.36168 8.52822 8.67043 9.32671 9.81463 11.29824 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.009497 C = 0.007466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.914237 B = 2947.743909 C = 3749.662012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.089 3.911 3 H 0.070 0.930 4 N -0.804 5.804 5 C -0.088 4.088 6 C -0.021 4.021 7 C 0.003 3.997 8 C -0.489 4.489 9 H 0.046 0.954 10 C 0.064 3.936 11 N -0.886 5.886 12 Si 0.869 3.131 13 H -0.284 1.284 14 H -0.292 1.292 15 H -0.283 1.283 16 C -0.111 4.111 17 C -0.100 4.100 18 C -0.432 4.432 19 S 1.233 4.767 20 O -0.889 6.889 21 C -0.414 4.414 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.352 0.648 26 H 0.318 0.682 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.095 0.905 30 H 0.011 0.989 31 H 0.255 0.745 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 3.217 3.505 5.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.024 4.024 3 H 0.088 0.912 4 N -0.333 5.333 5 C -0.127 4.127 6 C -0.022 4.022 7 C -0.034 4.034 8 C -0.528 4.528 9 H 0.064 0.936 10 C -0.136 4.136 11 N -0.526 5.526 12 Si 0.699 3.301 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.209 1.209 16 C -0.148 4.148 17 C -0.138 4.138 18 C -0.570 4.570 19 S 1.435 4.565 20 O -0.885 6.885 21 C -0.553 4.553 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.167 0.833 26 H 0.129 0.871 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.112 0.888 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.122 3.818 3.006 5.302 hybrid contribution -2.427 -0.378 1.877 3.092 sum -4.550 3.439 4.883 7.508 Atomic orbital electron populations 1.22736 0.99732 1.01425 1.00854 1.21470 0.90057 0.98172 0.92659 0.91208 1.59086 1.65559 1.06564 1.02135 1.21566 0.95475 1.01204 0.94455 1.20160 0.95178 0.89132 0.97759 1.19954 0.93972 0.94629 0.94838 1.21005 1.31921 0.94869 1.04965 0.93573 1.24808 0.95971 0.96803 0.96031 1.69925 1.37969 1.34678 1.10025 0.87061 0.78662 0.87408 0.76991 1.20994 1.21842 1.20888 1.21521 0.95343 1.01375 0.96596 1.21252 0.95274 0.92890 1.04334 1.27558 1.06633 1.07697 1.15132 1.71282 0.89699 0.91498 1.04050 1.92931 1.77495 1.34391 1.83637 1.27693 1.17748 1.03976 1.05887 0.93257 0.93573 0.92895 0.83308 0.87076 0.90364 0.94587 0.88777 0.97134 0.93527 0.94986 0.90705 0.87492 0.92735 0.87938 0.91018 0.86805 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 9.48 37.16 0.35 -2.12 16 2 C 0.09 1.34 3.01 -67.71 -0.20 1.13 16 3 H 0.07 1.06 5.93 -51.93 -0.31 0.75 16 4 N -0.80 -13.19 5.51 -4.67 -0.03 -13.21 16 5 C -0.09 -1.45 3.82 -26.73 -0.10 -1.55 16 6 C -0.02 -0.37 0.30 -154.67 -0.05 -0.41 16 7 C 0.00 0.06 2.59 -27.89 -0.07 -0.01 16 8 C -0.49 -11.12 6.72 -34.44 -0.23 -11.35 16 9 H 0.05 1.06 5.75 -52.49 -0.30 0.76 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 11 N -0.89 -22.98 13.29 55.43 0.74 -22.25 16 12 Si 0.87 19.59 29.54 -169.99 -5.02 14.57 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.11 -1.86 4.15 -27.16 -0.11 -1.97 16 17 C -0.10 -1.61 5.56 -26.89 -0.15 -1.76 16 18 C -0.43 -6.76 6.44 37.21 0.24 -6.53 16 19 S 1.23 20.97 12.26 -107.50 -1.32 19.66 16 20 O -0.89 -19.51 18.14 -35.23 -0.64 -20.15 16 21 C -0.41 -6.91 4.85 37.21 0.18 -6.73 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.35 6.26 8.43 -39.29 -0.33 5.93 16 26 H 0.32 4.62 9.07 -39.29 -0.36 4.26 16 27 H 0.08 1.41 6.36 -51.93 -0.33 1.08 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 2.03 5.33 -51.93 -0.28 1.75 16 30 H 0.01 0.22 4.89 -51.93 -0.25 -0.03 16 31 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 32 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.07 1.31 6.98 -51.93 -0.36 0.95 16 34 H 0.11 1.88 5.67 -51.93 -0.29 1.59 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.11 1.87 6.04 -51.93 -0.31 1.55 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 298.39 15.07 4.50 4.50 Total: -1.00 -28.63 298.39 -8.08 -36.71 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.06 Total: 10.01 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: -0.24 Total: -29.83 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.71 Total: -35.46 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.64 Total: -20.15 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 20.97 SS G_CDS: -1.32 Total: 19.66 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.63 -8.08 -36.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259696415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.218 kcal (2) G-P(sol) polarization free energy of solvation -28.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds