Wall clock time and date at job start Mon Mar 30 2020 04:39:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 109.46968 * 2 1
4 4 N 1.46899 * 109.47157 * 239.99567 * 2 1 3
5 5 C 1.52999 * 109.46683 * 119.99801 * 2 1 3
6 6 C 1.53007 * 109.46915 * 185.98030 * 5 2 1
7 7 C 1.52992 * 109.38912 * 294.57460 * 6 5 2
8 8 C 1.50703 * 109.47335 * 302.99211 * 7 6 5
9 9 H 1.07998 * 119.99943 * 354.53375 * 8 7 6
10 10 C 1.37877 * 119.99638 * 174.53462 * 8 7 6
11 11 N 1.31511 * 120.00566 * 359.97438 * 10 8 7
12 12 Si 1.86804 * 119.99623 * 180.02562 * 10 8 7
13 13 H 1.48495 * 109.47360 * 59.99803 * 12 10 8
14 14 H 1.48494 * 109.47365 * 180.02562 * 12 10 8
15 15 H 1.48507 * 109.46939 * 299.99548 * 12 10 8
16 16 C 1.52579 * 109.30835 * 174.82360 * 6 5 2
17 17 C 1.52583 * 110.72651 * 169.22693 * 16 6 5
18 18 C 1.53097 * 109.95688 * 70.67546 * 17 16 6
19 19 S 1.81750 * 108.83821 * 296.97528 * 18 17 16
20 20 O 1.42100 * 109.46613 * 169.25888 * 19 18 17
21 21 C 1.53097 * 109.38939 * 54.37838 * 6 5 2
22 22 H 1.08997 * 109.47296 * 300.00510 * 1 2 3
23 23 H 1.09005 * 109.46920 * 60.00587 * 1 2 3
24 24 H 1.09002 * 109.47405 * 179.97438 * 1 2 3
25 25 H 1.00903 * 110.99837 * 300.00228 * 4 2 1
26 26 H 1.00902 * 110.99851 * 63.95692 * 4 2 1
27 27 H 1.09004 * 109.47410 * 65.98046 * 5 2 1
28 28 H 1.09007 * 109.47171 * 305.97629 * 5 2 1
29 29 H 1.09001 * 109.47102 * 62.99194 * 7 6 5
30 30 H 1.08998 * 109.47499 * 182.98425 * 7 6 5
31 31 H 0.97001 * 120.00442 * 180.02562 * 11 10 8
32 32 H 1.09003 * 109.22628 * 289.54651 * 16 6 5
33 33 H 1.09001 * 109.22531 * 48.90399 * 16 6 5
34 34 H 1.09006 * 109.38898 * 310.52611 * 17 16 6
35 35 H 1.08997 * 109.39033 * 190.82361 * 17 16 6
36 36 H 1.08999 * 109.57420 * 177.17338 * 18 17 16
37 37 H 1.09002 * 109.68246 * 56.84407 * 18 17 16
38 38 H 1.08993 * 109.57778 * 302.88253 * 21 6 5
39 39 H 1.08998 * 109.57451 * 63.14040 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0197 -0.6926 -1.1994
5 6 2.0399 -0.7212 1.2493
6 6 3.5626 -0.5924 1.3268
7 6 4.1959 -1.3393 0.1514
8 6 3.7509 -2.7790 0.1725
9 1 3.1554 -3.1481 0.9944
10 6 4.1041 -3.6249 -0.8574
11 7 4.8288 -3.1753 -1.8585
12 14 3.5519 -5.4093 -0.8315
13 1 2.0682 -5.4681 -0.8117
14 1 4.0590 -6.1020 -2.0431
15 1 4.0900 -6.0764 0.3812
16 6 4.0543 -1.2000 2.6371
17 6 5.5744 -1.3313 2.6346
18 6 6.2188 0.0541 2.7319
19 16 5.7644 1.0174 1.2592
20 8 6.1413 2.3746 1.4463
21 6 3.9517 0.8867 1.2581
22 1 -0.3634 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8901
24 1 -0.3634 -1.0277 -0.0005
25 1 1.6961 -1.6480 -1.2226
26 1 1.7503 -0.1991 -2.0372
27 1 1.7666 -1.7752 1.1974
28 1 1.5918 -0.2728 2.1361
29 1 3.8832 -0.8761 -0.7845
30 1 5.2818 -1.2934 0.2343
31 1 5.0769 -3.7704 -2.5833
32 1 3.7507 -0.5601 3.4657
33 1 3.6089 -2.1867 2.7647
34 1 5.8943 -1.8152 1.7117
35 1 5.8868 -1.9363 3.4858
36 1 7.3027 -0.0499 2.7802
37 1 5.8605 0.5636 3.6264
38 1 3.5543 1.3268 0.3436
39 1 3.5453 1.4117 2.1226
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259696415.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:39:47
Heat of formation + Delta-G solvation = -45.929336 kcal
Electronic energy + Delta-G solvation = -19209.762813 eV
Core-core repulsion = 16471.590447 eV
Total energy + Delta-G solvation = -2738.172365 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-38.59636 -35.34711 -34.85159 -32.51590 -31.44369 -28.52352 -27.51512 -26.38406
-25.93084 -22.87357 -21.97099 -19.72819 -18.07358 -16.70652 -16.00945 -15.61457
-15.25198 -14.53213 -14.36135 -14.04768 -13.89346 -13.38199 -13.31960 -12.83868
-12.51283 -12.43912 -12.03429 -11.85423 -11.70037 -11.22505 -11.14100 -10.93360
-10.75047 -10.54169 -10.47975 -10.24913 -10.03915 -10.01428 -9.68055 -9.02177
-8.88467 -8.72241 -8.27041 -7.51012 -7.20553 -5.80920 -3.76372 2.16378
3.16053 3.36891 3.43672 3.46767 4.36271 4.57085 5.21167 5.26746
5.36221 5.51170 5.54788 5.56624 5.59945 5.73035 5.75993 5.87023
6.01783 6.07685 6.13434 6.28458 6.33043 6.36850 6.39960 6.50658
6.73181 6.79082 6.90954 6.95753 7.11644 7.38409 7.88936 8.04146
8.11812 8.36168 8.52822 8.67043 9.32671 9.81463 11.29824
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.017563 B = 0.009497 C = 0.007466
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1593.914237 B = 2947.743909 C = 3749.662012
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.089 3.911
3 H 0.070 0.930
4 N -0.804 5.804
5 C -0.088 4.088
6 C -0.021 4.021
7 C 0.003 3.997
8 C -0.489 4.489
9 H 0.046 0.954
10 C 0.064 3.936
11 N -0.886 5.886
12 Si 0.869 3.131
13 H -0.284 1.284
14 H -0.292 1.292
15 H -0.283 1.283
16 C -0.111 4.111
17 C -0.100 4.100
18 C -0.432 4.432
19 S 1.233 4.767
20 O -0.889 6.889
21 C -0.414 4.414
22 H 0.048 0.952
23 H 0.045 0.955
24 H 0.052 0.948
25 H 0.352 0.648
26 H 0.318 0.682
27 H 0.078 0.922
28 H 0.035 0.965
29 H 0.095 0.905
30 H 0.011 0.989
31 H 0.255 0.745
32 H 0.031 0.969
33 H 0.074 0.926
34 H 0.107 0.893
35 H 0.054 0.946
36 H 0.102 0.898
37 H 0.071 0.929
38 H 0.114 0.886
39 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.572 3.217 3.505 5.949
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.247 4.247
2 C -0.024 4.024
3 H 0.088 0.912
4 N -0.333 5.333
5 C -0.127 4.127
6 C -0.022 4.022
7 C -0.034 4.034
8 C -0.528 4.528
9 H 0.064 0.936
10 C -0.136 4.136
11 N -0.526 5.526
12 Si 0.699 3.301
13 H -0.210 1.210
14 H -0.218 1.218
15 H -0.209 1.209
16 C -0.148 4.148
17 C -0.138 4.138
18 C -0.570 4.570
19 S 1.435 4.565
20 O -0.885 6.885
21 C -0.553 4.553
22 H 0.067 0.933
23 H 0.064 0.936
24 H 0.071 0.929
25 H 0.167 0.833
26 H 0.129 0.871
27 H 0.096 0.904
28 H 0.054 0.946
29 H 0.112 0.888
30 H 0.029 0.971
31 H 0.065 0.935
32 H 0.050 0.950
33 H 0.093 0.907
34 H 0.125 0.875
35 H 0.073 0.927
36 H 0.121 0.879
37 H 0.090 0.910
38 H 0.132 0.868
39 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -2.122 3.818 3.006 5.302
hybrid contribution -2.427 -0.378 1.877 3.092
sum -4.550 3.439 4.883 7.508
Atomic orbital electron populations
1.22736 0.99732 1.01425 1.00854 1.21470 0.90057 0.98172 0.92659
0.91208 1.59086 1.65559 1.06564 1.02135 1.21566 0.95475 1.01204
0.94455 1.20160 0.95178 0.89132 0.97759 1.19954 0.93972 0.94629
0.94838 1.21005 1.31921 0.94869 1.04965 0.93573 1.24808 0.95971
0.96803 0.96031 1.69925 1.37969 1.34678 1.10025 0.87061 0.78662
0.87408 0.76991 1.20994 1.21842 1.20888 1.21521 0.95343 1.01375
0.96596 1.21252 0.95274 0.92890 1.04334 1.27558 1.06633 1.07697
1.15132 1.71282 0.89699 0.91498 1.04050 1.92931 1.77495 1.34391
1.83637 1.27693 1.17748 1.03976 1.05887 0.93257 0.93573 0.92895
0.83308 0.87076 0.90364 0.94587 0.88777 0.97134 0.93527 0.94986
0.90705 0.87492 0.92735 0.87938 0.91018 0.86805 0.91558
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.47 9.48 37.16 0.35 -2.12 16
2 C 0.09 1.34 3.01 -67.71 -0.20 1.13 16
3 H 0.07 1.06 5.93 -51.93 -0.31 0.75 16
4 N -0.80 -13.19 5.51 -4.67 -0.03 -13.21 16
5 C -0.09 -1.45 3.82 -26.73 -0.10 -1.55 16
6 C -0.02 -0.37 0.30 -154.67 -0.05 -0.41 16
7 C 0.00 0.06 2.59 -27.89 -0.07 -0.01 16
8 C -0.49 -11.12 6.72 -34.44 -0.23 -11.35 16
9 H 0.05 1.06 5.75 -52.49 -0.30 0.76 16
10 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16
11 N -0.89 -22.98 13.29 55.43 0.74 -22.25 16
12 Si 0.87 19.59 29.54 -169.99 -5.02 14.57 16
13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
16 C -0.11 -1.86 4.15 -27.16 -0.11 -1.97 16
17 C -0.10 -1.61 5.56 -26.89 -0.15 -1.76 16
18 C -0.43 -6.76 6.44 37.21 0.24 -6.53 16
19 S 1.23 20.97 12.26 -107.50 -1.32 19.66 16
20 O -0.89 -19.51 18.14 -35.23 -0.64 -20.15 16
21 C -0.41 -6.91 4.85 37.21 0.18 -6.73 16
22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16
24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16
25 H 0.35 6.26 8.43 -39.29 -0.33 5.93 16
26 H 0.32 4.62 9.07 -39.29 -0.36 4.26 16
27 H 0.08 1.41 6.36 -51.93 -0.33 1.08 16
28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.09 2.03 5.33 -51.93 -0.28 1.75 16
30 H 0.01 0.22 4.89 -51.93 -0.25 -0.03 16
31 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16
32 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16
33 H 0.07 1.31 6.98 -51.93 -0.36 0.95 16
34 H 0.11 1.88 5.67 -51.93 -0.29 1.59 16
35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
36 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16
37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
38 H 0.11 1.87 6.04 -51.93 -0.31 1.55 16
39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
LS Contribution 298.39 15.07 4.50 4.50
Total: -1.00 -28.63 298.39 -8.08 -36.71
By element:
Atomic # 1 Polarization: 16.07 SS G_CDS: -6.06 Total: 10.01 kcal
Atomic # 6 Polarization: -29.58 SS G_CDS: -0.24 Total: -29.83 kcal
Atomic # 7 Polarization: -36.17 SS G_CDS: 0.71 Total: -35.46 kcal
Atomic # 8 Polarization: -19.51 SS G_CDS: -0.64 Total: -20.15 kcal
Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal
Atomic # 16 Polarization: 20.97 SS G_CDS: -1.32 Total: 19.66 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -28.63 -8.08 -36.71 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259696415.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.218 kcal
(2) G-P(sol) polarization free energy of solvation -28.633 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.929 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds