Wall clock time and date at job start Mon Mar 30 2020 04:39:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 109.46968 * 2 1
4 4 N 1.46899 * 109.47157 * 239.99567 * 2 1 3
5 5 C 1.52999 * 109.46683 * 119.99801 * 2 1 3
6 6 C 1.53007 * 109.46915 * 185.98030 * 5 2 1
7 7 C 1.52992 * 109.38912 * 294.57460 * 6 5 2
8 8 C 1.50703 * 109.47335 * 302.99211 * 7 6 5
9 9 H 1.07998 * 119.99943 * 354.53375 * 8 7 6
10 10 C 1.37877 * 119.99638 * 174.53462 * 8 7 6
11 11 N 1.31511 * 120.00566 * 359.97438 * 10 8 7
12 12 Si 1.86804 * 119.99623 * 180.02562 * 10 8 7
13 13 H 1.48495 * 109.47360 * 59.99803 * 12 10 8
14 14 H 1.48494 * 109.47365 * 180.02562 * 12 10 8
15 15 H 1.48507 * 109.46939 * 299.99548 * 12 10 8
16 16 C 1.52579 * 109.30835 * 174.82360 * 6 5 2
17 17 C 1.52583 * 110.72651 * 169.22693 * 16 6 5
18 18 C 1.53097 * 109.95688 * 70.67546 * 17 16 6
19 19 S 1.81750 * 108.83821 * 296.97528 * 18 17 16
20 20 O 1.42100 * 109.46613 * 169.25888 * 19 18 17
21 21 C 1.53097 * 109.38939 * 54.37838 * 6 5 2
22 22 H 1.08997 * 109.47296 * 300.00510 * 1 2 3
23 23 H 1.09005 * 109.46920 * 60.00587 * 1 2 3
24 24 H 1.09002 * 109.47405 * 179.97438 * 1 2 3
25 25 H 1.00903 * 110.99837 * 300.00228 * 4 2 1
26 26 H 1.00902 * 110.99851 * 63.95692 * 4 2 1
27 27 H 1.09004 * 109.47410 * 65.98046 * 5 2 1
28 28 H 1.09007 * 109.47171 * 305.97629 * 5 2 1
29 29 H 1.09001 * 109.47102 * 62.99194 * 7 6 5
30 30 H 1.08998 * 109.47499 * 182.98425 * 7 6 5
31 31 H 0.97001 * 120.00442 * 180.02562 * 11 10 8
32 32 H 1.09003 * 109.22628 * 289.54651 * 16 6 5
33 33 H 1.09001 * 109.22531 * 48.90399 * 16 6 5
34 34 H 1.09006 * 109.38898 * 310.52611 * 17 16 6
35 35 H 1.08997 * 109.39033 * 190.82361 * 17 16 6
36 36 H 1.08999 * 109.57420 * 177.17338 * 18 17 16
37 37 H 1.09002 * 109.68246 * 56.84407 * 18 17 16
38 38 H 1.08993 * 109.57778 * 302.88253 * 21 6 5
39 39 H 1.08998 * 109.57451 * 63.14040 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0197 -0.6926 -1.1994
5 6 2.0399 -0.7212 1.2493
6 6 3.5626 -0.5924 1.3268
7 6 4.1959 -1.3393 0.1514
8 6 3.7509 -2.7790 0.1725
9 1 3.1554 -3.1481 0.9944
10 6 4.1041 -3.6249 -0.8574
11 7 4.8288 -3.1753 -1.8585
12 14 3.5519 -5.4093 -0.8315
13 1 2.0682 -5.4681 -0.8117
14 1 4.0590 -6.1020 -2.0431
15 1 4.0900 -6.0764 0.3812
16 6 4.0543 -1.2000 2.6371
17 6 5.5744 -1.3313 2.6346
18 6 6.2188 0.0541 2.7319
19 16 5.7644 1.0174 1.2592
20 8 6.1413 2.3746 1.4463
21 6 3.9517 0.8867 1.2581
22 1 -0.3634 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8901
24 1 -0.3634 -1.0277 -0.0005
25 1 1.6961 -1.6480 -1.2226
26 1 1.7503 -0.1991 -2.0372
27 1 1.7666 -1.7752 1.1974
28 1 1.5918 -0.2728 2.1361
29 1 3.8832 -0.8761 -0.7845
30 1 5.2818 -1.2934 0.2343
31 1 5.0769 -3.7704 -2.5833
32 1 3.7507 -0.5601 3.4657
33 1 3.6089 -2.1867 2.7647
34 1 5.8943 -1.8152 1.7117
35 1 5.8868 -1.9363 3.4858
36 1 7.3027 -0.0499 2.7802
37 1 5.8605 0.5636 3.6264
38 1 3.5543 1.3268 0.3436
39 1 3.5453 1.4117 2.1226
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259696415.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:39:47
Heat of formation + Delta-G solvation = -64.810657 kcal
Electronic energy + Delta-G solvation = -19210.581568 eV
Core-core repulsion = 16471.590447 eV
Total energy + Delta-G solvation = -2738.991121 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-39.99168 -36.77462 -36.24447 -34.30949 -32.82413 -29.85697 -29.04371 -27.82471
-27.18371 -24.60892 -23.27721 -20.98030 -19.56251 -18.17185 -17.71025 -16.96658
-16.64723 -16.18586 -15.80313 -15.47038 -15.29168 -14.80677 -14.64551 -14.16622
-13.93423 -13.60479 -13.59771 -13.29990 -13.02504 -12.73352 -12.61197 -12.47259
-12.40321 -12.00577 -11.95032 -11.70871 -11.55808 -11.44953 -11.14098 -10.47142
-10.38546 -10.35541 -10.10505 -8.91093 -8.56202 -7.70380 -5.65653 0.79239
1.55947 1.61954 1.62850 1.81594 2.71918 2.95112 3.66013 3.94006
4.03502 4.08323 4.19321 4.25176 4.41208 4.47451 4.52238 4.61012
4.76417 4.79996 4.91310 5.01252 5.08175 5.10217 5.20496 5.23419
5.39498 5.49661 5.54360 5.60494 5.73618 5.89080 6.10696 6.38664
6.76117 6.82638 6.85090 7.08590 7.55166 7.92966 9.40128
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.017563 B = 0.009497 C = 0.007466
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1593.914237 B = 2947.743909 C = 3749.662012
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.090 3.910
3 H 0.073 0.927
4 N -0.817 5.817
5 C -0.087 4.087
6 C -0.016 4.016
7 C 0.005 3.995
8 C -0.470 4.470
9 H 0.045 0.955
10 C 0.025 3.975
11 N -0.915 5.915
12 Si 0.912 3.088
13 H -0.281 1.281
14 H -0.303 1.303
15 H -0.285 1.285
16 C -0.113 4.113
17 C -0.098 4.098
18 C -0.422 4.422
19 S 1.241 4.759
20 O -0.939 6.939
21 C -0.406 4.406
22 H 0.058 0.942
23 H 0.056 0.944
24 H 0.047 0.953
25 H 0.342 0.658
26 H 0.328 0.672
27 H 0.061 0.939
28 H 0.050 0.950
29 H 0.086 0.914
30 H 0.006 0.994
31 H 0.248 0.752
32 H 0.045 0.955
33 H 0.066 0.934
34 H 0.091 0.909
35 H 0.071 0.929
36 H 0.121 0.879
37 H 0.075 0.925
38 H 0.117 0.883
39 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.308 3.395 4.650 7.191
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C -0.022 4.022
3 H 0.090 0.910
4 N -0.346 5.346
5 C -0.126 4.126
6 C -0.018 4.018
7 C -0.032 4.032
8 C -0.509 4.509
9 H 0.063 0.937
10 C -0.172 4.172
11 N -0.557 5.557
12 Si 0.742 3.258
13 H -0.207 1.207
14 H -0.230 1.230
15 H -0.211 1.211
16 C -0.150 4.150
17 C -0.136 4.136
18 C -0.561 4.561
19 S 1.445 4.555
20 O -0.934 6.934
21 C -0.546 4.546
22 H 0.077 0.923
23 H 0.075 0.925
24 H 0.067 0.933
25 H 0.156 0.844
26 H 0.140 0.860
27 H 0.080 0.920
28 H 0.068 0.932
29 H 0.103 0.897
30 H 0.024 0.976
31 H 0.058 0.942
32 H 0.064 0.936
33 H 0.085 0.915
34 H 0.109 0.891
35 H 0.090 0.910
36 H 0.139 0.861
37 H 0.094 0.906
38 H 0.135 0.865
39 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -2.871 4.010 4.155 6.449
hybrid contribution -2.228 -0.469 1.587 2.775
sum -5.100 3.541 5.741 8.456
Atomic orbital electron populations
1.22620 0.97977 1.01466 1.01905 1.21450 0.91466 0.97744 0.91536
0.90952 1.59026 1.66150 1.06239 1.03202 1.21542 0.94781 1.00481
0.95806 1.20038 0.95750 0.89080 0.96882 1.19879 0.93842 0.93615
0.95897 1.21248 1.29934 0.95855 1.03834 0.93723 1.25232 0.96714
0.98929 0.96354 1.70020 1.39834 1.35177 1.10692 0.86378 0.78296
0.84981 0.76114 1.20704 1.23013 1.21143 1.21536 0.95727 1.01163
0.96612 1.21210 0.94890 0.93177 1.04288 1.27433 1.07916 1.06730
1.14006 1.70855 0.89751 0.89922 1.04933 1.92860 1.78753 1.36688
1.85130 1.27573 1.17076 1.03490 1.06442 0.92286 0.92462 0.93345
0.84391 0.85989 0.92021 0.93161 0.89676 0.97567 0.94218 0.93593
0.91497 0.89067 0.91031 0.86068 0.90613 0.86462 0.90889
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.33 9.48 71.98 0.68 -3.65 16
2 C 0.09 2.55 3.01 44.92 0.14 2.68 16
3 H 0.07 2.04 5.93 -2.39 -0.01 2.02 16
4 N -0.82 -26.02 5.51 -168.68 -0.93 -26.95 16
5 C -0.09 -2.70 3.82 30.60 0.12 -2.58 16
6 C -0.02 -0.54 0.30 -52.29 -0.02 -0.55 16
7 C 0.00 0.19 2.59 29.85 0.08 0.27 16
8 C -0.47 -20.99 6.72 25.60 0.17 -20.82 16
9 H 0.04 2.00 5.75 -2.91 -0.02 1.98 16
10 C 0.02 1.20 5.46 84.66 0.46 1.66 16
11 N -0.91 -47.62 13.29 21.45 0.28 -47.33 16
12 Si 0.91 40.05 29.54 68.60 2.03 42.08 16
13 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16
14 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16
15 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16
16 C -0.11 -3.53 4.15 30.32 0.13 -3.40 16
17 C -0.10 -2.93 5.56 30.49 0.17 -2.76 16
18 C -0.42 -12.20 6.44 72.01 0.46 -11.74 16
19 S 1.24 40.79 12.26 -56.49 -0.69 40.10 16
20 O -0.94 -40.56 18.14 -148.98 -2.70 -43.27 16
21 C -0.41 -12.83 4.85 72.01 0.35 -12.48 16
22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
23 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16
24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
25 H 0.34 11.99 8.43 -89.69 -0.76 11.24 16
26 H 0.33 9.21 9.07 -89.69 -0.81 8.39 16
27 H 0.06 2.13 6.36 -2.39 -0.02 2.11 16
28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16
29 H 0.09 3.62 5.33 -2.39 -0.01 3.61 16
30 H 0.01 0.26 4.89 -2.39 -0.01 0.25 16
31 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16
32 H 0.05 1.32 8.08 -2.39 -0.02 1.30 16
33 H 0.07 2.21 6.98 -2.39 -0.02 2.19 16
34 H 0.09 3.07 5.67 -2.38 -0.01 3.06 16
35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
36 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16
37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
38 H 0.12 3.65 6.04 -2.39 -0.01 3.64 16
39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16
Total: -1.00 -58.95 298.39 0.22 -58.73
By element:
Atomic # 1 Polarization: 30.52 SS G_CDS: -0.51 Total: 30.01 kcal
Atomic # 6 Polarization: -56.11 SS G_CDS: 2.74 Total: -53.37 kcal
Atomic # 7 Polarization: -73.64 SS G_CDS: -0.64 Total: -74.28 kcal
Atomic # 8 Polarization: -40.56 SS G_CDS: -2.70 Total: -43.27 kcal
Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal
Atomic # 16 Polarization: 40.79 SS G_CDS: -0.69 Total: 40.10 kcal
Total: -58.95 0.22 -58.73 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259696415.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.076 kcal
(2) G-P(sol) polarization free energy of solvation -58.951 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.735 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.811 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds