Wall clock time and date at job start Mon Mar 30 2020 04:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46968 * 2 1 4 4 N 1.46899 * 109.47157 * 239.99567 * 2 1 3 5 5 C 1.52999 * 109.46683 * 119.99801 * 2 1 3 6 6 C 1.53007 * 109.46915 * 185.98030 * 5 2 1 7 7 C 1.52992 * 109.38912 * 294.57460 * 6 5 2 8 8 C 1.50703 * 109.47335 * 302.99211 * 7 6 5 9 9 H 1.07998 * 119.99943 * 354.53375 * 8 7 6 10 10 C 1.37877 * 119.99638 * 174.53462 * 8 7 6 11 11 N 1.31511 * 120.00566 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99623 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47360 * 59.99803 * 12 10 8 14 14 H 1.48494 * 109.47365 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46939 * 299.99548 * 12 10 8 16 16 C 1.52579 * 109.30835 * 174.82360 * 6 5 2 17 17 C 1.52583 * 110.72651 * 169.22693 * 16 6 5 18 18 C 1.53097 * 109.95688 * 70.67546 * 17 16 6 19 19 S 1.81750 * 108.83821 * 296.97528 * 18 17 16 20 20 O 1.42100 * 109.46613 * 169.25888 * 19 18 17 21 21 C 1.53097 * 109.38939 * 54.37838 * 6 5 2 22 22 H 1.08997 * 109.47296 * 300.00510 * 1 2 3 23 23 H 1.09005 * 109.46920 * 60.00587 * 1 2 3 24 24 H 1.09002 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.00903 * 110.99837 * 300.00228 * 4 2 1 26 26 H 1.00902 * 110.99851 * 63.95692 * 4 2 1 27 27 H 1.09004 * 109.47410 * 65.98046 * 5 2 1 28 28 H 1.09007 * 109.47171 * 305.97629 * 5 2 1 29 29 H 1.09001 * 109.47102 * 62.99194 * 7 6 5 30 30 H 1.08998 * 109.47499 * 182.98425 * 7 6 5 31 31 H 0.97001 * 120.00442 * 180.02562 * 11 10 8 32 32 H 1.09003 * 109.22628 * 289.54651 * 16 6 5 33 33 H 1.09001 * 109.22531 * 48.90399 * 16 6 5 34 34 H 1.09006 * 109.38898 * 310.52611 * 17 16 6 35 35 H 1.08997 * 109.39033 * 190.82361 * 17 16 6 36 36 H 1.08999 * 109.57420 * 177.17338 * 18 17 16 37 37 H 1.09002 * 109.68246 * 56.84407 * 18 17 16 38 38 H 1.08993 * 109.57778 * 302.88253 * 21 6 5 39 39 H 1.08998 * 109.57451 * 63.14040 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0399 -0.7212 1.2493 6 6 3.5626 -0.5924 1.3268 7 6 4.1959 -1.3393 0.1514 8 6 3.7509 -2.7790 0.1725 9 1 3.1554 -3.1481 0.9944 10 6 4.1041 -3.6249 -0.8574 11 7 4.8288 -3.1753 -1.8585 12 14 3.5519 -5.4093 -0.8315 13 1 2.0682 -5.4681 -0.8117 14 1 4.0590 -6.1020 -2.0431 15 1 4.0900 -6.0764 0.3812 16 6 4.0543 -1.2000 2.6371 17 6 5.5744 -1.3313 2.6346 18 6 6.2188 0.0541 2.7319 19 16 5.7644 1.0174 1.2592 20 8 6.1413 2.3746 1.4463 21 6 3.9517 0.8867 1.2581 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6961 -1.6480 -1.2226 26 1 1.7503 -0.1991 -2.0372 27 1 1.7666 -1.7752 1.1974 28 1 1.5918 -0.2728 2.1361 29 1 3.8832 -0.8761 -0.7845 30 1 5.2818 -1.2934 0.2343 31 1 5.0769 -3.7704 -2.5833 32 1 3.7507 -0.5601 3.4657 33 1 3.6089 -2.1867 2.7647 34 1 5.8943 -1.8152 1.7117 35 1 5.8868 -1.9363 3.4858 36 1 7.3027 -0.0499 2.7802 37 1 5.8605 0.5636 3.6264 38 1 3.5543 1.3268 0.3436 39 1 3.5453 1.4117 2.1226 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259696415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:47 Heat of formation + Delta-G solvation = -64.810657 kcal Electronic energy + Delta-G solvation = -19210.581568 eV Core-core repulsion = 16471.590447 eV Total energy + Delta-G solvation = -2738.991121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.99168 -36.77462 -36.24447 -34.30949 -32.82413 -29.85697 -29.04371 -27.82471 -27.18371 -24.60892 -23.27721 -20.98030 -19.56251 -18.17185 -17.71025 -16.96658 -16.64723 -16.18586 -15.80313 -15.47038 -15.29168 -14.80677 -14.64551 -14.16622 -13.93423 -13.60479 -13.59771 -13.29990 -13.02504 -12.73352 -12.61197 -12.47259 -12.40321 -12.00577 -11.95032 -11.70871 -11.55808 -11.44953 -11.14098 -10.47142 -10.38546 -10.35541 -10.10505 -8.91093 -8.56202 -7.70380 -5.65653 0.79239 1.55947 1.61954 1.62850 1.81594 2.71918 2.95112 3.66013 3.94006 4.03502 4.08323 4.19321 4.25176 4.41208 4.47451 4.52238 4.61012 4.76417 4.79996 4.91310 5.01252 5.08175 5.10217 5.20496 5.23419 5.39498 5.49661 5.54360 5.60494 5.73618 5.89080 6.10696 6.38664 6.76117 6.82638 6.85090 7.08590 7.55166 7.92966 9.40128 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.009497 C = 0.007466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.914237 B = 2947.743909 C = 3749.662012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 H 0.073 0.927 4 N -0.817 5.817 5 C -0.087 4.087 6 C -0.016 4.016 7 C 0.005 3.995 8 C -0.470 4.470 9 H 0.045 0.955 10 C 0.025 3.975 11 N -0.915 5.915 12 Si 0.912 3.088 13 H -0.281 1.281 14 H -0.303 1.303 15 H -0.285 1.285 16 C -0.113 4.113 17 C -0.098 4.098 18 C -0.422 4.422 19 S 1.241 4.759 20 O -0.939 6.939 21 C -0.406 4.406 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.342 0.658 26 H 0.328 0.672 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.006 0.994 31 H 0.248 0.752 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 3.395 4.650 7.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.022 4.022 3 H 0.090 0.910 4 N -0.346 5.346 5 C -0.126 4.126 6 C -0.018 4.018 7 C -0.032 4.032 8 C -0.509 4.509 9 H 0.063 0.937 10 C -0.172 4.172 11 N -0.557 5.557 12 Si 0.742 3.258 13 H -0.207 1.207 14 H -0.230 1.230 15 H -0.211 1.211 16 C -0.150 4.150 17 C -0.136 4.136 18 C -0.561 4.561 19 S 1.445 4.555 20 O -0.934 6.934 21 C -0.546 4.546 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.156 0.844 26 H 0.140 0.860 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.024 0.976 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.135 0.865 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.871 4.010 4.155 6.449 hybrid contribution -2.228 -0.469 1.587 2.775 sum -5.100 3.541 5.741 8.456 Atomic orbital electron populations 1.22620 0.97977 1.01466 1.01905 1.21450 0.91466 0.97744 0.91536 0.90952 1.59026 1.66150 1.06239 1.03202 1.21542 0.94781 1.00481 0.95806 1.20038 0.95750 0.89080 0.96882 1.19879 0.93842 0.93615 0.95897 1.21248 1.29934 0.95855 1.03834 0.93723 1.25232 0.96714 0.98929 0.96354 1.70020 1.39834 1.35177 1.10692 0.86378 0.78296 0.84981 0.76114 1.20704 1.23013 1.21143 1.21536 0.95727 1.01163 0.96612 1.21210 0.94890 0.93177 1.04288 1.27433 1.07916 1.06730 1.14006 1.70855 0.89751 0.89922 1.04933 1.92860 1.78753 1.36688 1.85130 1.27573 1.17076 1.03490 1.06442 0.92286 0.92462 0.93345 0.84391 0.85989 0.92021 0.93161 0.89676 0.97567 0.94218 0.93593 0.91497 0.89067 0.91031 0.86068 0.90613 0.86462 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.33 9.48 71.98 0.68 -3.65 16 2 C 0.09 2.55 3.01 44.92 0.14 2.68 16 3 H 0.07 2.04 5.93 -2.39 -0.01 2.02 16 4 N -0.82 -26.02 5.51 -168.68 -0.93 -26.95 16 5 C -0.09 -2.70 3.82 30.60 0.12 -2.58 16 6 C -0.02 -0.54 0.30 -52.29 -0.02 -0.55 16 7 C 0.00 0.19 2.59 29.85 0.08 0.27 16 8 C -0.47 -20.99 6.72 25.60 0.17 -20.82 16 9 H 0.04 2.00 5.75 -2.91 -0.02 1.98 16 10 C 0.02 1.20 5.46 84.66 0.46 1.66 16 11 N -0.91 -47.62 13.29 21.45 0.28 -47.33 16 12 Si 0.91 40.05 29.54 68.60 2.03 42.08 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 15 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 16 C -0.11 -3.53 4.15 30.32 0.13 -3.40 16 17 C -0.10 -2.93 5.56 30.49 0.17 -2.76 16 18 C -0.42 -12.20 6.44 72.01 0.46 -11.74 16 19 S 1.24 40.79 12.26 -56.49 -0.69 40.10 16 20 O -0.94 -40.56 18.14 -148.98 -2.70 -43.27 16 21 C -0.41 -12.83 4.85 72.01 0.35 -12.48 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.34 11.99 8.43 -89.69 -0.76 11.24 16 26 H 0.33 9.21 9.07 -89.69 -0.81 8.39 16 27 H 0.06 2.13 6.36 -2.39 -0.02 2.11 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.09 3.62 5.33 -2.39 -0.01 3.61 16 30 H 0.01 0.26 4.89 -2.39 -0.01 0.25 16 31 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 32 H 0.05 1.32 8.08 -2.39 -0.02 1.30 16 33 H 0.07 2.21 6.98 -2.39 -0.02 2.19 16 34 H 0.09 3.07 5.67 -2.38 -0.01 3.06 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.12 3.65 6.04 -2.39 -0.01 3.64 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -58.95 298.39 0.22 -58.73 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.51 Total: 30.01 kcal Atomic # 6 Polarization: -56.11 SS G_CDS: 2.74 Total: -53.37 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -0.64 Total: -74.28 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -2.70 Total: -43.27 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Atomic # 16 Polarization: 40.79 SS G_CDS: -0.69 Total: 40.10 kcal Total: -58.95 0.22 -58.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259696415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.076 kcal (2) G-P(sol) polarization free energy of solvation -58.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds