Wall clock time and date at job start Mon Mar 30 2020 04:34:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52992 * 109.47482 * 2 1
4 4 O 1.42905 * 109.47641 * 184.99974 * 3 2 1
5 5 N 1.46902 * 109.47094 * 239.99725 * 2 1 3
6 6 C 1.46905 * 110.99800 * 60.00278 * 5 2 1
7 7 C 1.53000 * 109.47234 * 179.97438 * 6 5 2
8 8 C 1.52995 * 109.46860 * 180.02562 * 7 6 5
9 9 S 1.81003 * 109.46911 * 179.97438 * 8 7 6
10 10 C 1.76200 * 100.00064 * 179.97438 * 9 8 7
11 11 H 1.07998 * 119.99962 * 359.97438 * 10 9 8
12 12 C 1.38797 * 119.99837 * 180.02562 * 10 9 8
13 13 N 1.31634 * 120.00021 * 179.97438 * 12 10 9
14 14 Si 1.86802 * 120.00403 * 359.97438 * 12 10 9
15 15 H 1.48496 * 109.46776 * 90.00006 * 14 12 10
16 16 H 1.48491 * 109.47289 * 210.00636 * 14 12 10
17 17 H 1.48499 * 109.46975 * 330.00631 * 14 12 10
18 18 C 1.53006 * 109.47127 * 120.00347 * 2 1 3
19 19 C 1.52997 * 117.49576 * 3.74549 * 18 2 1
20 20 C 1.52998 * 117.49507 * 295.08473 * 18 2 1
21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3
22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3
23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47563 * 305.00337 * 3 2 1
25 25 H 1.09004 * 109.47313 * 64.99993 * 3 2 1
26 26 H 0.96695 * 114.00050 * 180.02562 * 4 3 2
27 27 H 1.00896 * 111.00594 * 296.04777 * 5 2 1
28 28 H 1.08993 * 109.47004 * 300.00108 * 6 5 2
29 29 H 1.09002 * 109.47091 * 59.99861 * 6 5 2
30 30 H 1.09001 * 109.47170 * 299.99770 * 7 6 5
31 31 H 1.08994 * 109.47243 * 59.99707 * 7 6 5
32 32 H 1.09004 * 109.47471 * 299.99817 * 8 7 6
33 33 H 1.09002 * 109.47344 * 60.00066 * 8 7 6
34 34 H 0.96996 * 120.00598 * 179.97438 * 13 12 10
35 35 H 1.09003 * 115.54997 * 149.41536 * 18 2 1
36 36 H 1.08991 * 117.50428 * 359.97438 * 19 18 2
37 37 H 1.09003 * 117.49788 * 145.03190 * 19 18 2
38 38 H 1.09001 * 117.49520 * 214.98230 * 20 18 2
39 39 H 1.09000 * 117.50495 * 0.02562 * 20 18 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 3.4643 1.4441 -0.1174
5 7 2.0196 -0.6926 -1.1994
6 6 1.5486 -0.0264 -2.4211
7 6 2.0782 -0.7742 -3.6463
8 6 1.5881 -0.0800 -4.9186
9 16 2.2152 -0.9643 -6.3681
10 6 1.5185 0.0206 -7.6524
11 1 0.9105 0.8783 -7.4056
12 6 1.7504 -0.3066 -8.9812
13 7 1.2295 0.4288 -9.9406
14 14 2.8016 -1.7907 -9.4081
15 1 1.9376 -2.9931 -9.5212
16 1 3.4914 -1.5531 -10.7014
17 1 3.8114 -2.0055 -8.3406
18 6 2.0400 -0.7214 1.2492
19 6 0.9987 -1.3569 2.1726
20 6 1.7330 -0.0858 2.6067
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 -1.0277 -0.0005
24 1 1.6054 1.9815 -0.8418
25 1 1.7517 1.9298 0.9314
26 1 3.8573 2.3276 -0.1237
27 1 1.7502 -1.6649 -1.1910
28 1 0.4588 -0.0265 -2.4378
29 1 1.9121 1.0011 -2.4379
30 1 3.1681 -0.7737 -3.6294
31 1 1.7151 -1.8018 -3.6298
32 1 0.4982 -0.0802 -4.9359
33 1 1.9516 0.9475 -4.9349
34 1 1.3918 0.2004 -10.8693
35 1 2.9949 -1.2352 1.1385
36 1 -0.0497 -1.2608 1.8904
37 1 1.2687 -2.2886 2.6698
38 1 2.4858 -0.1819 3.3891
39 1 1.1673 0.8459 2.6099
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000309019479.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:34:14
Heat of formation + Delta-G solvation = -35.405751 kcal
Electronic energy + Delta-G solvation = -17319.417960 eV
Core-core repulsion = 14581.701932 eV
Total energy + Delta-G solvation = -2737.716028 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.77056 -36.36656 -35.79507 -32.84999 -32.41354 -29.45352 -26.70872 -25.85585
-25.35894 -22.90114 -22.42532 -20.94464 -18.85848 -17.46762 -17.36629 -16.83415
-15.62830 -15.24724 -14.95258 -14.93338 -14.34847 -13.94276 -13.71871 -13.39819
-12.89129 -12.69441 -12.50671 -12.27041 -12.04704 -11.70505 -11.53559 -11.47795
-11.04631 -11.02389 -10.84601 -10.56491 -10.44874 -10.16310 -10.03958 -9.95955
-9.73036 -8.98282 -8.52598 -8.34346 -6.90884 -6.26369 -3.98099 3.03619
3.32111 3.48398 3.52322 3.61688 3.93155 4.23260 4.34233 4.42874
4.63511 4.80696 4.83969 4.97102 5.07640 5.12446 5.16727 5.20111
5.21965 5.35038 5.40967 5.46929 5.49301 5.61062 5.69321 5.70999
5.83266 5.86692 5.97743 6.04845 6.12556 6.27825 6.55717 6.69779
7.09188 7.39782 7.63026 7.97490 8.46035 9.19780 10.83198
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.044979 B = 0.003462 C = 0.003426
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 622.356640 B = 8086.748623 C = 8170.548020
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.146 3.854
3 C 0.091 3.909
4 O -0.548 6.548
5 N -0.664 5.664
6 C 0.061 3.939
7 C -0.097 4.097
8 C -0.081 4.081
9 S -0.215 6.215
10 C -0.502 4.502
11 H 0.087 0.913
12 C 0.091 3.909
13 N -0.883 5.883
14 Si 0.862 3.138
15 H -0.269 1.269
16 H -0.276 1.276
17 H -0.237 1.237
18 C -0.127 4.127
19 C -0.192 4.192
20 C -0.176 4.176
21 H 0.064 0.936
22 H 0.061 0.939
23 H 0.067 0.933
24 H 0.043 0.957
25 H 0.044 0.956
26 H 0.370 0.630
27 H 0.340 0.660
28 H 0.030 0.970
29 H 0.072 0.928
30 H 0.075 0.925
31 H 0.063 0.937
32 H 0.064 0.936
33 H 0.067 0.933
34 H 0.270 0.730
35 H 0.114 0.886
36 H 0.098 0.902
37 H 0.091 0.909
38 H 0.093 0.907
39 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.338 -0.043 24.169 24.171
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.246 4.246
2 C 0.055 3.945
3 C 0.012 3.988
4 O -0.351 6.351
5 N -0.294 5.294
6 C -0.069 4.069
7 C -0.136 4.136
8 C -0.230 4.230
9 S 0.013 5.987
10 C -0.649 4.649
11 H 0.105 0.895
12 C -0.117 4.117
13 N -0.520 5.520
14 Si 0.687 3.313
15 H -0.194 1.194
16 H -0.201 1.201
17 H -0.161 1.161
18 C -0.145 4.145
19 C -0.229 4.229
20 C -0.214 4.214
21 H 0.083 0.917
22 H 0.080 0.920
23 H 0.086 0.914
24 H 0.062 0.938
25 H 0.062 0.938
26 H 0.216 0.784
27 H 0.158 0.842
28 H 0.048 0.952
29 H 0.091 0.909
30 H 0.094 0.906
31 H 0.081 0.919
32 H 0.083 0.917
33 H 0.085 0.915
34 H 0.080 0.920
35 H 0.132 0.868
36 H 0.117 0.883
37 H 0.110 0.890
38 H 0.111 0.889
39 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 0.812 -1.262 23.866 23.914
hybrid contribution -1.401 0.957 -0.412 1.746
sum -0.588 -0.305 23.454 23.464
Atomic orbital electron populations
1.22646 0.96565 1.02835 1.02550 1.20365 0.91218 0.92900 0.90036
1.22195 0.82434 0.95281 0.98868 1.86640 1.18987 1.32506 1.97011
1.60494 1.63058 1.05723 1.00175 1.22073 0.96864 0.99061 0.88943
1.21276 1.02062 0.98868 0.91407 1.23001 1.02307 1.01673 0.95978
1.84169 1.70284 1.43662 1.00624 1.22138 1.36528 1.15347 0.90919
0.89491 1.24801 0.95012 0.96680 0.95203 1.69939 1.43495 1.38621
0.99978 0.86661 0.82086 0.82898 0.79667 1.19407 1.20126 1.16092
1.22179 1.00105 1.02766 0.89483 1.23226 0.98261 0.97047 1.04324
1.22910 1.03502 0.96912 0.98043 0.91730 0.91972 0.91418 0.93842
0.93838 0.78431 0.84182 0.95193 0.90926 0.90584 0.91862 0.91750
0.91469 0.92005 0.86813 0.88347 0.89015 0.88886 0.89155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.65 6.80 37.16 0.25 -1.40 16
2 C 0.15 1.48 0.60 -131.60 -0.08 1.40 16
3 C 0.09 0.90 5.26 37.15 0.20 1.10 16
4 O -0.55 -6.14 13.19 -35.23 -0.46 -6.60 16
5 N -0.66 -8.02 5.86 -99.96 -0.59 -8.61 16
6 C 0.06 0.81 4.90 -3.82 -0.02 0.79 16
7 C -0.10 -1.56 5.48 -26.73 -0.15 -1.71 16
8 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16
9 S -0.22 -5.37 19.41 -107.50 -2.09 -7.45 16
10 C -0.50 -14.80 10.04 30.94 0.31 -14.49 16
11 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16
12 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16
13 N -0.88 -27.11 13.97 55.49 0.78 -26.34 16
14 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16
15 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16
16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
17 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16
18 C -0.13 -1.21 5.22 -90.62 -0.47 -1.68 16
19 C -0.19 -1.51 9.51 -26.69 -0.25 -1.76 16
20 C -0.18 -1.40 9.35 -26.69 -0.25 -1.65 16
21 H 0.06 0.61 6.40 -51.93 -0.33 0.28 16
22 H 0.06 0.47 7.18 -51.93 -0.37 0.10 16
23 H 0.07 0.58 7.23 -51.93 -0.38 0.20 16
24 H 0.04 0.44 6.68 -51.93 -0.35 0.09 16
25 H 0.04 0.36 6.82 -51.93 -0.35 0.01 16
26 H 0.37 2.62 9.12 45.56 0.42 3.03 16
27 H 0.34 3.87 8.72 -39.29 -0.34 3.53 16
28 H 0.03 0.38 6.30 -51.93 -0.33 0.06 16
29 H 0.07 1.00 6.42 -51.93 -0.33 0.67 16
30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16
31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
32 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16
33 H 0.07 1.34 8.14 -51.91 -0.42 0.92 16
34 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16
35 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16
36 H 0.10 0.73 5.82 -51.93 -0.30 0.43 16
37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
39 H 0.09 0.66 7.05 -51.93 -0.37 0.30 16
LS Contribution 320.52 15.07 4.83 4.83
Total: -1.00 -32.33 320.52 -8.17 -40.50
By element:
Atomic # 1 Polarization: 10.27 SS G_CDS: -5.57 Total: 4.70 kcal
Atomic # 6 Polarization: -17.83 SS G_CDS: -0.35 Total: -18.18 kcal
Atomic # 7 Polarization: -35.13 SS G_CDS: 0.19 Total: -34.94 kcal
Atomic # 8 Polarization: -6.14 SS G_CDS: -0.46 Total: -6.60 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal
Atomic # 16 Polarization: -5.37 SS G_CDS: -2.09 Total: -7.45 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -32.33 -8.17 -40.50 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309019479.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.093 kcal
(2) G-P(sol) polarization free energy of solvation -32.331 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.406 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds