Wall clock time and date at job start Mon Mar 30 2020 04:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42905 * 109.47641 * 184.99974 * 3 2 1 5 5 N 1.46902 * 109.47094 * 239.99725 * 2 1 3 6 6 C 1.46905 * 110.99800 * 60.00278 * 5 2 1 7 7 C 1.53000 * 109.47234 * 179.97438 * 6 5 2 8 8 C 1.52995 * 109.46860 * 180.02562 * 7 6 5 9 9 S 1.81003 * 109.46911 * 179.97438 * 8 7 6 10 10 C 1.76200 * 100.00064 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.38797 * 119.99837 * 180.02562 * 10 9 8 13 13 N 1.31634 * 120.00021 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00403 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.46776 * 90.00006 * 14 12 10 16 16 H 1.48491 * 109.47289 * 210.00636 * 14 12 10 17 17 H 1.48499 * 109.46975 * 330.00631 * 14 12 10 18 18 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 19 19 C 1.52997 * 117.49576 * 3.74549 * 18 2 1 20 20 C 1.52998 * 117.49507 * 295.08473 * 18 2 1 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 25 25 H 1.09004 * 109.47313 * 64.99993 * 3 2 1 26 26 H 0.96695 * 114.00050 * 180.02562 * 4 3 2 27 27 H 1.00896 * 111.00594 * 296.04777 * 5 2 1 28 28 H 1.08993 * 109.47004 * 300.00108 * 6 5 2 29 29 H 1.09002 * 109.47091 * 59.99861 * 6 5 2 30 30 H 1.09001 * 109.47170 * 299.99770 * 7 6 5 31 31 H 1.08994 * 109.47243 * 59.99707 * 7 6 5 32 32 H 1.09004 * 109.47471 * 299.99817 * 8 7 6 33 33 H 1.09002 * 109.47344 * 60.00066 * 8 7 6 34 34 H 0.96996 * 120.00598 * 179.97438 * 13 12 10 35 35 H 1.09003 * 115.54997 * 149.41536 * 18 2 1 36 36 H 1.08991 * 117.50428 * 359.97438 * 19 18 2 37 37 H 1.09003 * 117.49788 * 145.03190 * 19 18 2 38 38 H 1.09001 * 117.49520 * 214.98230 * 20 18 2 39 39 H 1.09000 * 117.50495 * 0.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4643 1.4441 -0.1174 5 7 2.0196 -0.6926 -1.1994 6 6 1.5486 -0.0264 -2.4211 7 6 2.0782 -0.7742 -3.6463 8 6 1.5881 -0.0800 -4.9186 9 16 2.2152 -0.9643 -6.3681 10 6 1.5185 0.0206 -7.6524 11 1 0.9105 0.8783 -7.4056 12 6 1.7504 -0.3066 -8.9812 13 7 1.2295 0.4288 -9.9406 14 14 2.8016 -1.7907 -9.4081 15 1 1.9376 -2.9931 -9.5212 16 1 3.4914 -1.5531 -10.7014 17 1 3.8114 -2.0055 -8.3406 18 6 2.0400 -0.7214 1.2492 19 6 0.9987 -1.3569 2.1726 20 6 1.7330 -0.0858 2.6067 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6054 1.9815 -0.8418 25 1 1.7517 1.9298 0.9314 26 1 3.8573 2.3276 -0.1237 27 1 1.7502 -1.6649 -1.1910 28 1 0.4588 -0.0265 -2.4378 29 1 1.9121 1.0011 -2.4379 30 1 3.1681 -0.7737 -3.6294 31 1 1.7151 -1.8018 -3.6298 32 1 0.4982 -0.0802 -4.9359 33 1 1.9516 0.9475 -4.9349 34 1 1.3918 0.2004 -10.8693 35 1 2.9949 -1.2352 1.1385 36 1 -0.0497 -1.2608 1.8904 37 1 1.2687 -2.2886 2.6698 38 1 2.4858 -0.1819 3.3891 39 1 1.1673 0.8459 2.6099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309019479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:14 Heat of formation + Delta-G solvation = -35.405751 kcal Electronic energy + Delta-G solvation = -17319.417960 eV Core-core repulsion = 14581.701932 eV Total energy + Delta-G solvation = -2737.716028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77056 -36.36656 -35.79507 -32.84999 -32.41354 -29.45352 -26.70872 -25.85585 -25.35894 -22.90114 -22.42532 -20.94464 -18.85848 -17.46762 -17.36629 -16.83415 -15.62830 -15.24724 -14.95258 -14.93338 -14.34847 -13.94276 -13.71871 -13.39819 -12.89129 -12.69441 -12.50671 -12.27041 -12.04704 -11.70505 -11.53559 -11.47795 -11.04631 -11.02389 -10.84601 -10.56491 -10.44874 -10.16310 -10.03958 -9.95955 -9.73036 -8.98282 -8.52598 -8.34346 -6.90884 -6.26369 -3.98099 3.03619 3.32111 3.48398 3.52322 3.61688 3.93155 4.23260 4.34233 4.42874 4.63511 4.80696 4.83969 4.97102 5.07640 5.12446 5.16727 5.20111 5.21965 5.35038 5.40967 5.46929 5.49301 5.61062 5.69321 5.70999 5.83266 5.86692 5.97743 6.04845 6.12556 6.27825 6.55717 6.69779 7.09188 7.39782 7.63026 7.97490 8.46035 9.19780 10.83198 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.044979 B = 0.003462 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.356640 B = 8086.748623 C = 8170.548020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.146 3.854 3 C 0.091 3.909 4 O -0.548 6.548 5 N -0.664 5.664 6 C 0.061 3.939 7 C -0.097 4.097 8 C -0.081 4.081 9 S -0.215 6.215 10 C -0.502 4.502 11 H 0.087 0.913 12 C 0.091 3.909 13 N -0.883 5.883 14 Si 0.862 3.138 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.237 1.237 18 C -0.127 4.127 19 C -0.192 4.192 20 C -0.176 4.176 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.370 0.630 27 H 0.340 0.660 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.270 0.730 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 -0.043 24.169 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.055 3.945 3 C 0.012 3.988 4 O -0.351 6.351 5 N -0.294 5.294 6 C -0.069 4.069 7 C -0.136 4.136 8 C -0.230 4.230 9 S 0.013 5.987 10 C -0.649 4.649 11 H 0.105 0.895 12 C -0.117 4.117 13 N -0.520 5.520 14 Si 0.687 3.313 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.161 1.161 18 C -0.145 4.145 19 C -0.229 4.229 20 C -0.214 4.214 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.216 0.784 27 H 0.158 0.842 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.812 -1.262 23.866 23.914 hybrid contribution -1.401 0.957 -0.412 1.746 sum -0.588 -0.305 23.454 23.464 Atomic orbital electron populations 1.22646 0.96565 1.02835 1.02550 1.20365 0.91218 0.92900 0.90036 1.22195 0.82434 0.95281 0.98868 1.86640 1.18987 1.32506 1.97011 1.60494 1.63058 1.05723 1.00175 1.22073 0.96864 0.99061 0.88943 1.21276 1.02062 0.98868 0.91407 1.23001 1.02307 1.01673 0.95978 1.84169 1.70284 1.43662 1.00624 1.22138 1.36528 1.15347 0.90919 0.89491 1.24801 0.95012 0.96680 0.95203 1.69939 1.43495 1.38621 0.99978 0.86661 0.82086 0.82898 0.79667 1.19407 1.20126 1.16092 1.22179 1.00105 1.02766 0.89483 1.23226 0.98261 0.97047 1.04324 1.22910 1.03502 0.96912 0.98043 0.91730 0.91972 0.91418 0.93842 0.93838 0.78431 0.84182 0.95193 0.90926 0.90584 0.91862 0.91750 0.91469 0.92005 0.86813 0.88347 0.89015 0.88886 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 6.80 37.16 0.25 -1.40 16 2 C 0.15 1.48 0.60 -131.60 -0.08 1.40 16 3 C 0.09 0.90 5.26 37.15 0.20 1.10 16 4 O -0.55 -6.14 13.19 -35.23 -0.46 -6.60 16 5 N -0.66 -8.02 5.86 -99.96 -0.59 -8.61 16 6 C 0.06 0.81 4.90 -3.82 -0.02 0.79 16 7 C -0.10 -1.56 5.48 -26.73 -0.15 -1.71 16 8 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 9 S -0.22 -5.37 19.41 -107.50 -2.09 -7.45 16 10 C -0.50 -14.80 10.04 30.94 0.31 -14.49 16 11 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 12 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 13 N -0.88 -27.11 13.97 55.49 0.78 -26.34 16 14 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 15 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 18 C -0.13 -1.21 5.22 -90.62 -0.47 -1.68 16 19 C -0.19 -1.51 9.51 -26.69 -0.25 -1.76 16 20 C -0.18 -1.40 9.35 -26.69 -0.25 -1.65 16 21 H 0.06 0.61 6.40 -51.93 -0.33 0.28 16 22 H 0.06 0.47 7.18 -51.93 -0.37 0.10 16 23 H 0.07 0.58 7.23 -51.93 -0.38 0.20 16 24 H 0.04 0.44 6.68 -51.93 -0.35 0.09 16 25 H 0.04 0.36 6.82 -51.93 -0.35 0.01 16 26 H 0.37 2.62 9.12 45.56 0.42 3.03 16 27 H 0.34 3.87 8.72 -39.29 -0.34 3.53 16 28 H 0.03 0.38 6.30 -51.93 -0.33 0.06 16 29 H 0.07 1.00 6.42 -51.93 -0.33 0.67 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 33 H 0.07 1.34 8.14 -51.91 -0.42 0.92 16 34 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.10 0.73 5.82 -51.93 -0.30 0.43 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.66 7.05 -51.93 -0.37 0.30 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -32.33 320.52 -8.17 -40.50 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.57 Total: 4.70 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -0.35 Total: -18.18 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.19 Total: -34.94 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.46 Total: -6.60 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -2.09 Total: -7.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.33 -8.17 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309019479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.093 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds