Wall clock time and date at job start Mon Mar 30 2020 04:34:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52992 * 109.47482 * 2 1
4 4 O 1.42905 * 109.47641 * 184.99974 * 3 2 1
5 5 N 1.46902 * 109.47094 * 239.99725 * 2 1 3
6 6 C 1.46905 * 110.99800 * 60.00278 * 5 2 1
7 7 C 1.53000 * 109.47234 * 179.97438 * 6 5 2
8 8 C 1.52995 * 109.46860 * 180.02562 * 7 6 5
9 9 S 1.81003 * 109.46911 * 179.97438 * 8 7 6
10 10 C 1.76200 * 100.00064 * 179.97438 * 9 8 7
11 11 H 1.07998 * 119.99962 * 359.97438 * 10 9 8
12 12 C 1.38797 * 119.99837 * 180.02562 * 10 9 8
13 13 N 1.31634 * 120.00021 * 179.97438 * 12 10 9
14 14 Si 1.86802 * 120.00403 * 359.97438 * 12 10 9
15 15 H 1.48496 * 109.46776 * 90.00006 * 14 12 10
16 16 H 1.48491 * 109.47289 * 210.00636 * 14 12 10
17 17 H 1.48499 * 109.46975 * 330.00631 * 14 12 10
18 18 C 1.53006 * 109.47127 * 120.00347 * 2 1 3
19 19 C 1.52997 * 117.49576 * 3.74549 * 18 2 1
20 20 C 1.52998 * 117.49507 * 295.08473 * 18 2 1
21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3
22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3
23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47563 * 305.00337 * 3 2 1
25 25 H 1.09004 * 109.47313 * 64.99993 * 3 2 1
26 26 H 0.96695 * 114.00050 * 180.02562 * 4 3 2
27 27 H 1.00896 * 111.00594 * 296.04777 * 5 2 1
28 28 H 1.08993 * 109.47004 * 300.00108 * 6 5 2
29 29 H 1.09002 * 109.47091 * 59.99861 * 6 5 2
30 30 H 1.09001 * 109.47170 * 299.99770 * 7 6 5
31 31 H 1.08994 * 109.47243 * 59.99707 * 7 6 5
32 32 H 1.09004 * 109.47471 * 299.99817 * 8 7 6
33 33 H 1.09002 * 109.47344 * 60.00066 * 8 7 6
34 34 H 0.96996 * 120.00598 * 179.97438 * 13 12 10
35 35 H 1.09003 * 115.54997 * 149.41536 * 18 2 1
36 36 H 1.08991 * 117.50428 * 359.97438 * 19 18 2
37 37 H 1.09003 * 117.49788 * 145.03190 * 19 18 2
38 38 H 1.09001 * 117.49520 * 214.98230 * 20 18 2
39 39 H 1.09000 * 117.50495 * 0.02562 * 20 18 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 3.4643 1.4441 -0.1174
5 7 2.0196 -0.6926 -1.1994
6 6 1.5486 -0.0264 -2.4211
7 6 2.0782 -0.7742 -3.6463
8 6 1.5881 -0.0800 -4.9186
9 16 2.2152 -0.9643 -6.3681
10 6 1.5185 0.0206 -7.6524
11 1 0.9105 0.8783 -7.4056
12 6 1.7504 -0.3066 -8.9812
13 7 1.2295 0.4288 -9.9406
14 14 2.8016 -1.7907 -9.4081
15 1 1.9376 -2.9931 -9.5212
16 1 3.4914 -1.5531 -10.7014
17 1 3.8114 -2.0055 -8.3406
18 6 2.0400 -0.7214 1.2492
19 6 0.9987 -1.3569 2.1726
20 6 1.7330 -0.0858 2.6067
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 -1.0277 -0.0005
24 1 1.6054 1.9815 -0.8418
25 1 1.7517 1.9298 0.9314
26 1 3.8573 2.3276 -0.1237
27 1 1.7502 -1.6649 -1.1910
28 1 0.4588 -0.0265 -2.4378
29 1 1.9121 1.0011 -2.4379
30 1 3.1681 -0.7737 -3.6294
31 1 1.7151 -1.8018 -3.6298
32 1 0.4982 -0.0802 -4.9359
33 1 1.9516 0.9475 -4.9349
34 1 1.3918 0.2004 -10.8693
35 1 2.9949 -1.2352 1.1385
36 1 -0.0497 -1.2608 1.8904
37 1 1.2687 -2.2886 2.6698
38 1 2.4858 -0.1819 3.3891
39 1 1.1673 0.8459 2.6099
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000309019479.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:34:13
Heat of formation + Delta-G solvation = -58.998612 kcal
Electronic energy + Delta-G solvation = -17320.441023 eV
Core-core repulsion = 14581.701932 eV
Total energy + Delta-G solvation = -2738.739092 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.53492 -37.15478 -36.76503 -34.69500 -33.98118 -30.42241 -27.99855 -27.43644
-26.60528 -23.92578 -23.02665 -22.12864 -19.78015 -19.47192 -18.17207 -17.63738
-17.12110 -16.72552 -16.40698 -15.81673 -15.61031 -15.07754 -14.94551 -14.66882
-14.30390 -13.84235 -13.63294 -13.38577 -13.26066 -13.07739 -12.89080 -12.67662
-12.50455 -12.19551 -12.04097 -11.77546 -11.65466 -11.59977 -11.16979 -11.10189
-10.82453 -10.72332 -10.56644 -9.26360 -8.99714 -8.52766 -6.24055 1.12278
1.31641 1.48151 1.73933 2.24718 2.67996 2.85251 2.86696 3.11518
3.48291 3.73820 3.95489 3.98947 4.13869 4.18951 4.25066 4.34381
4.38783 4.45550 4.52507 4.53471 4.58315 4.70429 4.75563 4.81474
4.91348 4.98213 5.03983 5.17052 5.25333 5.28829 5.29216 5.38889
5.68951 6.08906 6.17253 6.50372 6.91407 7.01467 8.60452
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.044979 B = 0.003462 C = 0.003426
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 622.356640 B = 8086.748623 C = 8170.548020
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.145 3.855
3 C 0.087 3.913
4 O -0.571 6.571
5 N -0.673 5.673
6 C 0.074 3.926
7 C -0.084 4.084
8 C -0.068 4.068
9 S -0.221 6.221
10 C -0.523 4.523
11 H 0.050 0.950
12 C 0.038 3.962
13 N -0.923 5.923
14 Si 0.926 3.074
15 H -0.260 1.260
16 H -0.262 1.262
17 H -0.230 1.230
18 C -0.141 4.141
19 C -0.183 4.183
20 C -0.170 4.170
21 H 0.057 0.943
22 H 0.076 0.924
23 H 0.071 0.929
24 H 0.039 0.961
25 H 0.062 0.938
26 H 0.385 0.615
27 H 0.343 0.657
28 H 0.039 0.961
29 H 0.067 0.933
30 H 0.067 0.933
31 H 0.069 0.931
32 H 0.065 0.935
33 H 0.063 0.937
34 H 0.277 0.723
35 H 0.094 0.906
36 H 0.106 0.894
37 H 0.096 0.904
38 H 0.097 0.903
39 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.175 -0.989 25.893 25.913
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C 0.054 3.946
3 C 0.009 3.991
4 O -0.377 6.377
5 N -0.304 5.304
6 C -0.057 4.057
7 C -0.123 4.123
8 C -0.217 4.217
9 S 0.007 5.993
10 C -0.670 4.670
11 H 0.068 0.932
12 C -0.167 4.167
13 N -0.561 5.561
14 Si 0.747 3.253
15 H -0.185 1.185
16 H -0.187 1.187
17 H -0.154 1.154
18 C -0.159 4.159
19 C -0.219 4.219
20 C -0.207 4.207
21 H 0.076 0.924
22 H 0.095 0.905
23 H 0.090 0.910
24 H 0.057 0.943
25 H 0.080 0.920
26 H 0.233 0.767
27 H 0.162 0.838
28 H 0.057 0.943
29 H 0.086 0.914
30 H 0.085 0.915
31 H 0.088 0.912
32 H 0.084 0.916
33 H 0.081 0.919
34 H 0.086 0.914
35 H 0.112 0.888
36 H 0.124 0.876
37 H 0.115 0.885
38 H 0.115 0.885
39 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 0.974 -2.191 25.605 25.717
hybrid contribution -1.487 1.342 -0.846 2.174
sum -0.513 -0.850 24.759 24.779
Atomic orbital electron populations
1.22598 0.95402 1.03204 1.02936 1.20450 0.92077 0.92855 0.89263
1.22296 0.81912 0.95326 0.99589 1.86592 1.19772 1.34225 1.97100
1.60440 1.63591 1.06067 1.00340 1.21840 0.97142 0.98314 0.88375
1.21153 1.01406 0.99152 0.90617 1.23058 1.02234 1.01215 0.95150
1.83878 1.70423 1.43702 1.01295 1.22347 1.36503 1.15151 0.93029
0.93175 1.25786 0.96206 0.99706 0.94995 1.70036 1.44856 1.40512
1.00703 0.85703 0.80530 0.79058 0.80000 1.18495 1.18656 1.15352
1.22031 0.99917 1.03969 0.90022 1.23283 0.98210 0.97304 1.03150
1.22987 1.03465 0.97378 0.96864 0.92447 0.90463 0.91048 0.94309
0.92024 0.76678 0.83802 0.94337 0.91440 0.91472 0.91193 0.91601
0.91852 0.91363 0.88801 0.87566 0.88512 0.88483 0.88238
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.80 6.80 71.98 0.49 -2.31 16
2 C 0.14 2.68 0.60 3.53 0.00 2.68 16
3 C 0.09 1.59 5.26 71.98 0.38 1.97 16
4 O -0.57 -12.12 13.19 -148.98 -1.96 -14.09 16
5 N -0.67 -15.32 5.86 -470.18 -2.75 -18.07 16
6 C 0.07 1.86 4.90 86.30 0.42 2.29 16
7 C -0.08 -2.60 5.48 30.59 0.17 -2.43 16
8 C -0.07 -2.65 5.67 71.98 0.41 -2.24 16
9 S -0.22 -10.91 19.41 -56.49 -1.10 -12.01 16
10 C -0.52 -31.41 10.04 67.95 0.68 -30.73 16
11 H 0.05 3.27 8.03 -2.91 -0.02 3.24 16
12 C 0.04 2.25 5.50 84.86 0.47 2.71 16
13 N -0.92 -57.49 13.97 21.65 0.30 -57.19 16
14 Si 0.93 44.81 27.74 68.60 1.90 46.72 16
15 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16
16 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16
17 H -0.23 -10.80 6.74 99.48 0.67 -10.13 16
18 C -0.14 -2.45 5.22 -10.79 -0.06 -2.51 16
19 C -0.18 -2.45 9.51 30.62 0.29 -2.16 16
20 C -0.17 -2.30 9.35 30.62 0.29 -2.01 16
21 H 0.06 0.97 6.40 -2.39 -0.02 0.95 16
22 H 0.08 0.95 7.18 -2.39 -0.02 0.93 16
23 H 0.07 1.04 7.23 -2.38 -0.02 1.03 16
24 H 0.04 0.73 6.68 -2.39 -0.02 0.72 16
25 H 0.06 0.89 6.82 -2.39 -0.02 0.87 16
26 H 0.39 5.04 9.12 -74.06 -0.68 4.36 16
27 H 0.34 7.30 8.72 -89.70 -0.78 6.52 16
28 H 0.04 0.91 6.30 -2.39 -0.02 0.90 16
29 H 0.07 1.79 6.42 -2.39 -0.02 1.77 16
30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16
33 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16
34 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16
35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16
36 H 0.11 1.27 5.82 -2.39 -0.01 1.25 16
37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16
38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16
39 H 0.10 1.17 7.05 -2.39 -0.02 1.15 16
Total: -1.00 -69.21 320.52 -0.52 -69.73
By element:
Atomic # 1 Polarization: 20.10 SS G_CDS: -0.45 Total: 19.65 kcal
Atomic # 6 Polarization: -38.28 SS G_CDS: 3.54 Total: -34.74 kcal
Atomic # 7 Polarization: -72.81 SS G_CDS: -2.45 Total: -75.26 kcal
Atomic # 8 Polarization: -12.12 SS G_CDS: -1.96 Total: -14.09 kcal
Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.72 kcal
Atomic # 16 Polarization: -10.91 SS G_CDS: -1.10 Total: -12.01 kcal
Total: -69.21 -0.52 -69.73 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309019479.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.731 kcal
(2) G-P(sol) polarization free energy of solvation -69.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.482 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.999 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds