Wall clock time and date at job start Mon Mar 30 2020 05:32:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86803 * 119.99579 * 2 1
4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1
5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1
6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1
7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3
8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1
9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1
10 10 O 1.42898 * 109.47060 * 179.97438 * 9 7 2
11 11 C 1.42904 * 113.99522 * 179.97438 * 10 9 7
12 12 C 1.53002 * 109.46613 * 179.97438 * 11 10 9
13 13 N 1.46902 * 109.47186 * 65.00468 * 12 11 10
14 14 C 1.46851 * 110.99860 * 66.03923 * 13 12 11
15 15 C 1.53035 * 109.52222 * 174.16152 * 14 13 12
16 16 C 1.53117 * 109.27841 * 59.18013 * 15 14 13
17 17 C 1.53122 * 109.16184 * 302.34632 * 16 15 14
18 18 O 1.42897 * 109.50079 * 297.70843 * 17 16 15
19 19 C 1.53000 * 109.50305 * 177.63345 * 17 16 15
20 20 O 1.42896 * 109.47491 * 59.99879 * 19 17 16
21 21 C 1.46847 * 110.99797 * 301.83399 * 13 12 11
22 22 H 0.96999 * 120.00235 * 359.97438 * 1 2 3
23 23 H 1.09004 * 109.46762 * 299.99954 * 9 7 2
24 24 H 1.09001 * 109.46863 * 60.00053 * 9 7 2
25 25 H 1.08994 * 109.47141 * 299.99874 * 11 10 9
26 26 H 1.08998 * 109.46913 * 60.00229 * 11 10 9
27 27 H 1.09010 * 109.46903 * 185.00102 * 12 11 10
28 28 H 1.08993 * 109.47587 * 305.00226 * 12 11 10
29 29 H 1.09002 * 109.46649 * 294.17850 * 14 13 12
30 30 H 1.08999 * 109.46203 * 54.16213 * 14 13 12
31 31 H 1.09000 * 109.50758 * 179.12016 * 15 14 13
32 32 H 1.09004 * 109.50825 * 299.24267 * 15 14 13
33 33 H 1.09003 * 109.52339 * 62.25181 * 16 15 14
34 34 H 1.09000 * 109.52842 * 182.44033 * 16 15 14
35 35 H 0.96693 * 114.00650 * 300.00244 * 18 17 16
36 36 H 1.09002 * 109.47366 * 180.02562 * 19 17 16
37 37 H 1.09000 * 109.47213 * 299.99898 * 19 17 16
38 38 H 0.96694 * 114.00693 * 180.02562 * 20 19 17
39 39 H 1.08995 * 109.45946 * 305.85505 * 21 13 12
40 40 H 1.08998 * 109.46496 * 65.82379 * 21 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4966 2.0464 1.4001
5 1 3.5466 1.4403 -0.7001
6 1 1.4465 2.6527 -0.6999
7 6 2.0046 -1.1939 0.0056
8 1 1.4647 -2.1293 0.0104
9 6 3.5117 -1.1939 0.0050
10 8 3.9880 -2.5412 0.0121
11 6 5.4126 -2.6539 0.0115
12 6 5.8071 -4.1321 0.0200
13 7 5.3668 -4.7636 -1.2312
14 6 6.0945 -4.2143 -2.3823
15 6 5.7175 -4.9930 -3.6447
16 6 4.2073 -4.8850 -3.8730
17 6 3.4731 -5.4190 -2.6399
18 8 3.7880 -6.8010 -2.4585
19 6 1.9640 -5.2604 -2.8355
20 8 1.5532 -5.9961 -3.9896
21 6 3.9152 -4.6279 -1.4067
22 1 -0.4850 0.8400 0.0004
23 1 3.8746 -0.6844 -0.8877
24 1 3.8753 -0.6757 0.8924
25 1 5.8146 -2.1753 -0.8814
26 1 5.8160 -2.1654 0.8985
27 1 6.8901 -4.2187 0.1092
28 1 5.3320 -4.6302 0.8651
29 1 5.8314 -3.1644 -2.5111
30 1 7.1672 -4.3013 -2.2091
31 1 6.2458 -4.5750 -4.5016
32 1 5.9930 -6.0405 -3.5221
33 1 3.9369 -3.8415 -4.0344
34 1 3.9279 -5.4739 -4.7466
35 1 3.5377 -7.3627 -3.2047
36 1 1.4418 -5.6402 -1.9573
37 1 1.7242 -4.2060 -2.9725
38 1 0.6059 -5.9404 -4.1750
39 1 3.4051 -5.0151 -0.5248
40 1 3.6622 -3.5761 -1.5400
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000313695623.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:32:19
Heat of formation + Delta-G solvation = -143.030266 kcal
Electronic energy + Delta-G solvation = -21130.164884 eV
Core-core repulsion = 17945.029036 eV
Total energy + Delta-G solvation = -3185.135849 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.73342 -37.60353 -36.23752 -35.12830 -32.99307 -32.43343 -30.56209 -28.98243
-27.43450 -25.67302 -23.95082 -22.19649 -21.90420 -20.77950 -19.40932 -17.28215
-16.94266 -16.28194 -16.02438 -15.72452 -15.29540 -14.64422 -14.60254 -14.44284
-14.27366 -13.69789 -13.23217 -12.75558 -12.61779 -12.53398 -12.24665 -11.93371
-11.78725 -11.68553 -11.30112 -11.06267 -10.92289 -10.79259 -10.72624 -10.59143
-10.11014 -9.95369 -9.82707 -9.42783 -9.28312 -8.93113 -8.57259 -7.76924
-6.20608 -4.20202 3.17729 3.25322 3.25994 3.96547 4.27377 4.39795
4.54091 4.73545 4.95631 5.01511 5.11099 5.18706 5.40299 5.41836
5.52290 5.60813 5.67861 5.70809 5.79191 5.84093 5.88432 5.99678
6.04354 6.06728 6.21489 6.28276 6.41081 6.49190 6.51663 6.70904
6.90070 7.37193 7.42821 7.50617 7.65611 7.88760 8.03393 8.54694
8.88998 9.38794 10.92038
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.019919 B = 0.006629 C = 0.005548
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1405.333039 B = 4222.576838 C = 5046.052310
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.074 3.926
3 Si 0.874 3.126
4 H -0.273 1.273
5 H -0.268 1.268
6 H -0.282 1.282
7 C -0.519 4.519
8 H 0.082 0.918
9 C 0.165 3.835
10 O -0.373 6.373
11 C 0.017 3.983
12 C 0.059 3.941
13 N -0.522 5.522
14 C 0.049 3.951
15 C -0.110 4.110
16 C -0.142 4.142
17 C 0.144 3.856
18 O -0.542 6.542
19 C 0.048 3.952
20 O -0.578 6.578
21 C 0.066 3.934
22 H 0.267 0.733
23 H 0.001 0.999
24 H -0.002 1.002
25 H 0.039 0.961
26 H 0.043 0.957
27 H 0.082 0.918
28 H 0.083 0.917
29 H 0.034 0.966
30 H 0.069 0.931
31 H 0.060 0.940
32 H 0.073 0.927
33 H 0.066 0.934
34 H 0.069 0.931
35 H 0.368 0.632
36 H 0.056 0.944
37 H 0.062 0.938
38 H 0.381 0.619
39 H 0.080 0.920
40 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.533 -8.816 -6.705 14.614
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.128 4.128
3 Si 0.701 3.299
4 H -0.199 1.199
5 H -0.192 1.192
6 H -0.207 1.207
7 C -0.557 4.557
8 H 0.101 0.899
9 C 0.090 3.910
10 O -0.292 6.292
11 C -0.062 4.062
12 C -0.069 4.069
13 N -0.245 5.245
14 C -0.079 4.079
15 C -0.148 4.148
16 C -0.180 4.180
17 C 0.102 3.898
18 O -0.346 6.346
19 C -0.031 4.031
20 O -0.384 6.384
21 C -0.061 4.061
22 H 0.077 0.923
23 H 0.018 0.982
24 H 0.016 0.984
25 H 0.057 0.943
26 H 0.061 0.939
27 H 0.100 0.900
28 H 0.101 0.899
29 H 0.052 0.948
30 H 0.087 0.913
31 H 0.079 0.921
32 H 0.092 0.908
33 H 0.085 0.915
34 H 0.088 0.912
35 H 0.214 0.786
36 H 0.074 0.926
37 H 0.080 0.920
38 H 0.228 0.772
39 H 0.098 0.902
40 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 10.217 -9.265 -6.115 15.087
hybrid contribution -0.525 2.196 -0.485 2.309
sum 9.693 -7.069 -6.599 13.692
Atomic orbital electron populations
1.69863 1.06021 1.27163 1.50109 1.24755 0.94784 0.98727 0.94559
0.86877 0.80311 0.83882 0.78835 1.19890 1.19235 1.20738 1.20848
0.88108 0.95253 1.51512 0.89948 1.20622 0.96247 0.79841 0.94322
1.88001 1.17504 1.29226 1.94494 1.23160 0.85160 0.98291 0.99618
1.22282 1.00058 0.91200 0.93344 1.62030 1.05160 1.55803 1.01475
1.22133 0.98022 0.96544 0.91176 1.21479 0.95527 1.01467 0.96290
1.22176 0.95805 1.01805 0.98216 1.21323 0.90294 0.82812 0.95357
1.86616 1.85164 1.17347 1.45490 1.22919 0.96181 0.96224 0.87766
1.86294 1.29738 1.74485 1.47846 1.22320 0.87624 1.00065 0.96094
0.92306 0.98177 0.98411 0.94288 0.93913 0.90001 0.89873 0.94794
0.91289 0.92125 0.90816 0.91486 0.91248 0.78604 0.92567 0.92022
0.77219 0.90153 0.88857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16
2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16
3 Si 0.87 21.00 27.46 -169.99 -4.67 16.33 16
4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
5 H -0.27 -6.19 6.55 56.52 0.37 -5.82 16
6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
7 C -0.52 -14.78 9.99 -34.44 -0.34 -15.13 16
8 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16
9 C 0.16 4.03 4.76 36.01 0.17 4.20 16
10 O -0.37 -8.10 6.77 -35.23 -0.24 -8.34 16
11 C 0.02 0.29 5.75 37.16 0.21 0.50 16
12 C 0.06 0.88 5.93 -3.82 -0.02 0.86 16
13 N -0.52 -8.23 4.74 -234.67 -1.11 -9.34 16
14 C 0.05 0.69 5.06 -3.83 -0.02 0.67 16
15 C -0.11 -1.42 5.94 -26.65 -0.16 -1.58 16
16 C -0.14 -1.99 4.80 -26.61 -0.13 -2.12 16
17 C 0.14 2.21 0.82 -90.54 -0.07 2.14 16
18 O -0.54 -8.33 12.31 -44.73 -0.55 -8.88 16
19 C 0.05 0.71 6.17 37.16 0.23 0.94 16
20 O -0.58 -7.35 12.54 -44.73 -0.56 -7.92 16
21 C 0.07 1.16 3.20 -3.83 -0.01 1.15 16
22 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16
23 H 0.00 0.01 7.21 -51.93 -0.37 -0.36 16
24 H 0.00 -0.04 7.56 -51.93 -0.39 -0.44 16
25 H 0.04 0.65 6.46 -51.93 -0.34 0.31 16
26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16
27 H 0.08 1.00 8.06 -51.92 -0.42 0.58 16
28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16
29 H 0.03 0.51 6.65 -51.93 -0.35 0.17 16
30 H 0.07 0.84 8.06 -51.93 -0.42 0.43 16
31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.07 0.98 7.80 -51.93 -0.40 0.58 16
33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
34 H 0.07 0.92 7.76 -51.93 -0.40 0.52 16
35 H 0.37 4.66 8.57 45.56 0.39 5.05 16
36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
38 H 0.38 3.34 9.12 45.56 0.42 3.76 16
39 H 0.08 1.54 8.12 -51.93 -0.42 1.11 16
40 H 0.09 1.87 5.58 -51.93 -0.29 1.58 16
LS Contribution 312.60 15.07 4.71 4.71
Total: -1.00 -31.44 312.60 -7.01 -38.45
By element:
Atomic # 1 Polarization: 12.46 SS G_CDS: -5.12 Total: 7.34 kcal
Atomic # 6 Polarization: -6.12 SS G_CDS: -0.24 Total: -6.36 kcal
Atomic # 7 Polarization: -35.00 SS G_CDS: -0.34 Total: -35.34 kcal
Atomic # 8 Polarization: -23.79 SS G_CDS: -1.35 Total: -25.14 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -31.44 -7.01 -38.45 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000313695623.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -104.579 kcal
(2) G-P(sol) polarization free energy of solvation -31.440 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.019 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -143.030 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds