Wall clock time and date at job start Mon Mar 30 2020 05:32:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86803 * 119.99579 * 2 1
4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1
5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1
6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1
7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3
8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1
9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1
10 10 O 1.42898 * 109.47060 * 179.97438 * 9 7 2
11 11 C 1.42904 * 113.99522 * 179.97438 * 10 9 7
12 12 C 1.53002 * 109.46613 * 179.97438 * 11 10 9
13 13 N 1.46902 * 109.47186 * 65.00468 * 12 11 10
14 14 C 1.46851 * 110.99860 * 66.03923 * 13 12 11
15 15 C 1.53035 * 109.52222 * 174.16152 * 14 13 12
16 16 C 1.53117 * 109.27841 * 59.18013 * 15 14 13
17 17 C 1.53122 * 109.16184 * 302.34632 * 16 15 14
18 18 O 1.42897 * 109.50079 * 297.70843 * 17 16 15
19 19 C 1.53000 * 109.50305 * 177.63345 * 17 16 15
20 20 O 1.42896 * 109.47491 * 59.99879 * 19 17 16
21 21 C 1.46847 * 110.99797 * 301.83399 * 13 12 11
22 22 H 0.96999 * 120.00235 * 359.97438 * 1 2 3
23 23 H 1.09004 * 109.46762 * 299.99954 * 9 7 2
24 24 H 1.09001 * 109.46863 * 60.00053 * 9 7 2
25 25 H 1.08994 * 109.47141 * 299.99874 * 11 10 9
26 26 H 1.08998 * 109.46913 * 60.00229 * 11 10 9
27 27 H 1.09010 * 109.46903 * 185.00102 * 12 11 10
28 28 H 1.08993 * 109.47587 * 305.00226 * 12 11 10
29 29 H 1.09002 * 109.46649 * 294.17850 * 14 13 12
30 30 H 1.08999 * 109.46203 * 54.16213 * 14 13 12
31 31 H 1.09000 * 109.50758 * 179.12016 * 15 14 13
32 32 H 1.09004 * 109.50825 * 299.24267 * 15 14 13
33 33 H 1.09003 * 109.52339 * 62.25181 * 16 15 14
34 34 H 1.09000 * 109.52842 * 182.44033 * 16 15 14
35 35 H 0.96693 * 114.00650 * 300.00244 * 18 17 16
36 36 H 1.09002 * 109.47366 * 180.02562 * 19 17 16
37 37 H 1.09000 * 109.47213 * 299.99898 * 19 17 16
38 38 H 0.96694 * 114.00693 * 180.02562 * 20 19 17
39 39 H 1.08995 * 109.45946 * 305.85505 * 21 13 12
40 40 H 1.08998 * 109.46496 * 65.82379 * 21 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4966 2.0464 1.4001
5 1 3.5466 1.4403 -0.7001
6 1 1.4465 2.6527 -0.6999
7 6 2.0046 -1.1939 0.0056
8 1 1.4647 -2.1293 0.0104
9 6 3.5117 -1.1939 0.0050
10 8 3.9880 -2.5412 0.0121
11 6 5.4126 -2.6539 0.0115
12 6 5.8071 -4.1321 0.0200
13 7 5.3668 -4.7636 -1.2312
14 6 6.0945 -4.2143 -2.3823
15 6 5.7175 -4.9930 -3.6447
16 6 4.2073 -4.8850 -3.8730
17 6 3.4731 -5.4190 -2.6399
18 8 3.7880 -6.8010 -2.4585
19 6 1.9640 -5.2604 -2.8355
20 8 1.5532 -5.9961 -3.9896
21 6 3.9152 -4.6279 -1.4067
22 1 -0.4850 0.8400 0.0004
23 1 3.8746 -0.6844 -0.8877
24 1 3.8753 -0.6757 0.8924
25 1 5.8146 -2.1753 -0.8814
26 1 5.8160 -2.1654 0.8985
27 1 6.8901 -4.2187 0.1092
28 1 5.3320 -4.6302 0.8651
29 1 5.8314 -3.1644 -2.5111
30 1 7.1672 -4.3013 -2.2091
31 1 6.2458 -4.5750 -4.5016
32 1 5.9930 -6.0405 -3.5221
33 1 3.9369 -3.8415 -4.0344
34 1 3.9279 -5.4739 -4.7466
35 1 3.5377 -7.3627 -3.2047
36 1 1.4418 -5.6402 -1.9573
37 1 1.7242 -4.2060 -2.9725
38 1 0.6059 -5.9404 -4.1750
39 1 3.4051 -5.0151 -0.5248
40 1 3.6622 -3.5761 -1.5400
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000313695623.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:32:18
Heat of formation + Delta-G solvation = -170.158438 kcal
Electronic energy + Delta-G solvation = -21131.341250 eV
Core-core repulsion = 17945.029036 eV
Total energy + Delta-G solvation = -3186.312214 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.97666 -39.02842 -37.56994 -36.36216 -34.91087 -33.86426 -31.77533 -30.67122
-29.10511 -26.86549 -25.29697 -23.98188 -23.31456 -22.02581 -20.66629 -19.04799
-18.41632 -17.55842 -17.38786 -17.30855 -16.74705 -16.29805 -15.82279 -15.67066
-15.60211 -15.24364 -14.69340 -14.60779 -13.91821 -13.72593 -13.46879 -13.38058
-13.31697 -13.06823 -12.82572 -12.67992 -12.54253 -12.11580 -11.97885 -11.88606
-11.74714 -11.42742 -11.25078 -11.02389 -10.93510 -10.61823 -10.34153 -9.07496
-8.39788 -6.47010 1.29902 1.31541 1.42000 2.25340 2.76332 2.92902
3.00245 3.35770 3.48185 3.78977 3.85715 4.03166 4.14848 4.19685
4.30366 4.36484 4.43104 4.47446 4.56231 4.57111 4.61705 4.70782
4.84948 4.90110 4.91616 4.94769 5.06364 5.06759 5.16278 5.30981
5.40863 5.45915 5.89209 6.09982 6.24806 6.56252 6.68454 6.71925
6.94829 7.17233 8.76646
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.019919 B = 0.006629 C = 0.005548
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1405.333039 B = 4222.576838 C = 5046.052310
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.939 5.939
2 C 0.017 3.983
3 Si 0.949 3.051
4 H -0.261 1.261
5 H -0.249 1.249
6 H -0.274 1.274
7 C -0.538 4.538
8 H 0.034 0.966
9 C 0.176 3.824
10 O -0.391 6.391
11 C 0.011 3.989
12 C 0.062 3.938
13 N -0.525 5.525
14 C 0.046 3.954
15 C -0.105 4.105
16 C -0.137 4.137
17 C 0.145 3.855
18 O -0.550 6.550
19 C 0.055 3.945
20 O -0.575 6.575
21 C 0.075 3.925
22 H 0.272 0.728
23 H 0.006 0.994
24 H 0.007 0.993
25 H 0.048 0.952
26 H 0.058 0.942
27 H 0.119 0.881
28 H 0.073 0.927
29 H 0.022 0.978
30 H 0.095 0.905
31 H 0.084 0.916
32 H 0.074 0.926
33 H 0.054 0.946
34 H 0.080 0.920
35 H 0.381 0.619
36 H 0.044 0.956
37 H 0.042 0.958
38 H 0.398 0.602
39 H 0.051 0.949
40 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.184 -8.297 -7.532 16.554
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.182 4.182
3 Si 0.770 3.230
4 H -0.186 1.186
5 H -0.173 1.173
6 H -0.199 1.199
7 C -0.576 4.576
8 H 0.053 0.947
9 C 0.101 3.899
10 O -0.310 6.310
11 C -0.068 4.068
12 C -0.066 4.066
13 N -0.248 5.248
14 C -0.081 4.081
15 C -0.142 4.142
16 C -0.175 4.175
17 C 0.104 3.896
18 O -0.356 6.356
19 C -0.024 4.024
20 O -0.383 6.383
21 C -0.053 4.053
22 H 0.081 0.919
23 H 0.024 0.976
24 H 0.025 0.975
25 H 0.066 0.934
26 H 0.076 0.924
27 H 0.137 0.863
28 H 0.091 0.909
29 H 0.041 0.959
30 H 0.113 0.887
31 H 0.103 0.897
32 H 0.093 0.907
33 H 0.073 0.927
34 H 0.098 0.902
35 H 0.229 0.771
36 H 0.062 0.938
37 H 0.061 0.939
38 H 0.249 0.751
39 H 0.069 0.931
40 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 12.872 -8.776 -6.955 17.060
hybrid contribution -1.406 1.889 -0.235 2.367
sum 11.465 -6.887 -7.190 15.185
Atomic orbital electron populations
1.70015 1.08069 1.28652 1.51084 1.25745 0.95713 1.03076 0.93645
0.85706 0.79427 0.78153 0.79668 1.18595 1.17271 1.19880 1.21087
0.90632 0.93816 1.52063 0.94714 1.20303 0.93512 0.81453 0.94653
1.88018 1.20765 1.27563 1.94678 1.23453 0.82455 1.00176 1.00668
1.22395 1.02042 0.89419 0.92737 1.62068 1.03942 1.56125 1.02637
1.22268 0.99148 0.95894 0.90815 1.21483 0.94527 1.01524 0.96715
1.22123 0.96756 1.01033 0.97595 1.21191 0.90442 0.82887 0.95124
1.86572 1.85213 1.17287 1.46534 1.22702 0.96352 0.95235 0.88135
1.86252 1.31586 1.73825 1.46612 1.22047 0.88983 0.98447 0.95851
0.91863 0.97626 0.97544 0.93412 0.92427 0.86262 0.90879 0.95933
0.88683 0.89712 0.90729 0.92698 0.90178 0.77124 0.93779 0.93931
0.75145 0.93053 0.91794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16
2 C 0.02 0.96 5.47 84.65 0.46 1.42 16
3 Si 0.95 42.81 27.46 68.60 1.88 44.69 16
4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16
5 H -0.25 -10.43 6.55 99.48 0.65 -9.78 16
6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
7 C -0.54 -31.79 9.99 25.60 0.26 -31.53 16
8 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16
9 C 0.18 8.62 4.76 71.24 0.34 8.96 16
10 O -0.39 -17.24 6.77 -148.98 -1.01 -18.25 16
11 C 0.01 0.35 5.75 71.98 0.41 0.76 16
12 C 0.06 1.74 5.93 86.30 0.51 2.26 16
13 N -0.52 -15.96 4.74 -896.35 -4.25 -20.21 16
14 C 0.05 1.18 5.06 86.32 0.44 1.62 16
15 C -0.10 -2.44 5.94 30.64 0.18 -2.26 16
16 C -0.14 -3.69 4.80 30.67 0.15 -3.55 16
17 C 0.14 4.50 0.82 -10.74 -0.01 4.49 16
18 O -0.55 -16.51 12.31 -139.89 -1.72 -18.24 16
19 C 0.05 1.70 6.17 71.98 0.44 2.15 16
20 O -0.57 -14.36 12.54 -139.89 -1.75 -16.12 16
21 C 0.07 2.69 3.20 86.33 0.28 2.97 16
22 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16
23 H 0.01 0.29 7.21 -2.39 -0.02 0.27 16
24 H 0.01 0.32 7.56 -2.39 -0.02 0.30 16
25 H 0.05 1.49 6.46 -2.39 -0.02 1.47 16
26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
27 H 0.12 2.48 8.06 -2.38 -0.02 2.46 16
28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16
29 H 0.02 0.63 6.65 -2.39 -0.02 0.62 16
30 H 0.09 1.95 8.06 -2.39 -0.02 1.93 16
31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
32 H 0.07 1.76 7.80 -2.39 -0.02 1.74 16
33 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16
34 H 0.08 1.98 7.76 -2.39 -0.02 1.96 16
35 H 0.38 9.13 8.57 -74.06 -0.64 8.49 16
36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
38 H 0.40 6.77 9.12 -74.06 -0.68 6.09 16
39 H 0.05 2.09 8.12 -2.39 -0.02 2.07 16
40 H 0.06 2.69 5.58 -2.39 -0.01 2.68 16
Total: -1.00 -69.54 312.60 -3.42 -72.96
By element:
Atomic # 1 Polarization: 25.77 SS G_CDS: -0.33 Total: 25.44 kcal
Atomic # 6 Polarization: -16.17 SS G_CDS: 3.46 Total: -12.71 kcal
Atomic # 7 Polarization: -73.84 SS G_CDS: -3.95 Total: -77.79 kcal
Atomic # 8 Polarization: -48.12 SS G_CDS: -4.48 Total: -52.60 kcal
Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.69 kcal
Total: -69.54 -3.42 -72.96 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000313695623.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.194 kcal
(2) G-P(sol) polarization free energy of solvation -69.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.738 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.420 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -170.158 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds