Wall clock time and date at job start Mon Mar 30 2020 05:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 O 1.42898 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99522 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46613 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47186 * 65.00468 * 12 11 10 14 14 C 1.46851 * 110.99860 * 66.03923 * 13 12 11 15 15 C 1.53035 * 109.52222 * 174.16152 * 14 13 12 16 16 C 1.53117 * 109.27841 * 59.18013 * 15 14 13 17 17 C 1.53122 * 109.16184 * 302.34632 * 16 15 14 18 18 O 1.42897 * 109.50079 * 297.70843 * 17 16 15 19 19 C 1.53000 * 109.50305 * 177.63345 * 17 16 15 20 20 O 1.42896 * 109.47491 * 59.99879 * 19 17 16 21 21 C 1.46847 * 110.99797 * 301.83399 * 13 12 11 22 22 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 24 24 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 25 25 H 1.08994 * 109.47141 * 299.99874 * 11 10 9 26 26 H 1.08998 * 109.46913 * 60.00229 * 11 10 9 27 27 H 1.09010 * 109.46903 * 185.00102 * 12 11 10 28 28 H 1.08993 * 109.47587 * 305.00226 * 12 11 10 29 29 H 1.09002 * 109.46649 * 294.17850 * 14 13 12 30 30 H 1.08999 * 109.46203 * 54.16213 * 14 13 12 31 31 H 1.09000 * 109.50758 * 179.12016 * 15 14 13 32 32 H 1.09004 * 109.50825 * 299.24267 * 15 14 13 33 33 H 1.09003 * 109.52339 * 62.25181 * 16 15 14 34 34 H 1.09000 * 109.52842 * 182.44033 * 16 15 14 35 35 H 0.96693 * 114.00650 * 300.00244 * 18 17 16 36 36 H 1.09002 * 109.47366 * 180.02562 * 19 17 16 37 37 H 1.09000 * 109.47213 * 299.99898 * 19 17 16 38 38 H 0.96694 * 114.00693 * 180.02562 * 20 19 17 39 39 H 1.08995 * 109.45946 * 305.85505 * 21 13 12 40 40 H 1.08998 * 109.46496 * 65.82379 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 8 3.9880 -2.5412 0.0121 11 6 5.4126 -2.6539 0.0115 12 6 5.8071 -4.1321 0.0200 13 7 5.3668 -4.7636 -1.2312 14 6 6.0945 -4.2143 -2.3823 15 6 5.7175 -4.9930 -3.6447 16 6 4.2073 -4.8850 -3.8730 17 6 3.4731 -5.4190 -2.6399 18 8 3.7880 -6.8010 -2.4585 19 6 1.9640 -5.2604 -2.8355 20 8 1.5532 -5.9961 -3.9896 21 6 3.9152 -4.6279 -1.4067 22 1 -0.4850 0.8400 0.0004 23 1 3.8746 -0.6844 -0.8877 24 1 3.8753 -0.6757 0.8924 25 1 5.8146 -2.1753 -0.8814 26 1 5.8160 -2.1654 0.8985 27 1 6.8901 -4.2187 0.1092 28 1 5.3320 -4.6302 0.8651 29 1 5.8314 -3.1644 -2.5111 30 1 7.1672 -4.3013 -2.2091 31 1 6.2458 -4.5750 -4.5016 32 1 5.9930 -6.0405 -3.5221 33 1 3.9369 -3.8415 -4.0344 34 1 3.9279 -5.4739 -4.7466 35 1 3.5377 -7.3627 -3.2047 36 1 1.4418 -5.6402 -1.9573 37 1 1.7242 -4.2060 -2.9725 38 1 0.6059 -5.9404 -4.1750 39 1 3.4051 -5.0151 -0.5248 40 1 3.6622 -3.5761 -1.5400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313695623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:18 Heat of formation + Delta-G solvation = -170.158438 kcal Electronic energy + Delta-G solvation = -21131.341250 eV Core-core repulsion = 17945.029036 eV Total energy + Delta-G solvation = -3186.312214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97666 -39.02842 -37.56994 -36.36216 -34.91087 -33.86426 -31.77533 -30.67122 -29.10511 -26.86549 -25.29697 -23.98188 -23.31456 -22.02581 -20.66629 -19.04799 -18.41632 -17.55842 -17.38786 -17.30855 -16.74705 -16.29805 -15.82279 -15.67066 -15.60211 -15.24364 -14.69340 -14.60779 -13.91821 -13.72593 -13.46879 -13.38058 -13.31697 -13.06823 -12.82572 -12.67992 -12.54253 -12.11580 -11.97885 -11.88606 -11.74714 -11.42742 -11.25078 -11.02389 -10.93510 -10.61823 -10.34153 -9.07496 -8.39788 -6.47010 1.29902 1.31541 1.42000 2.25340 2.76332 2.92902 3.00245 3.35770 3.48185 3.78977 3.85715 4.03166 4.14848 4.19685 4.30366 4.36484 4.43104 4.47446 4.56231 4.57111 4.61705 4.70782 4.84948 4.90110 4.91616 4.94769 5.06364 5.06759 5.16278 5.30981 5.40863 5.45915 5.89209 6.09982 6.24806 6.56252 6.68454 6.71925 6.94829 7.17233 8.76646 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.006629 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.333039 B = 4222.576838 C = 5046.052310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.249 1.249 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.034 0.966 9 C 0.176 3.824 10 O -0.391 6.391 11 C 0.011 3.989 12 C 0.062 3.938 13 N -0.525 5.525 14 C 0.046 3.954 15 C -0.105 4.105 16 C -0.137 4.137 17 C 0.145 3.855 18 O -0.550 6.550 19 C 0.055 3.945 20 O -0.575 6.575 21 C 0.075 3.925 22 H 0.272 0.728 23 H 0.006 0.994 24 H 0.007 0.993 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.022 0.978 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.381 0.619 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.398 0.602 39 H 0.051 0.949 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.184 -8.297 -7.532 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.173 1.173 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.053 0.947 9 C 0.101 3.899 10 O -0.310 6.310 11 C -0.068 4.068 12 C -0.066 4.066 13 N -0.248 5.248 14 C -0.081 4.081 15 C -0.142 4.142 16 C -0.175 4.175 17 C 0.104 3.896 18 O -0.356 6.356 19 C -0.024 4.024 20 O -0.383 6.383 21 C -0.053 4.053 22 H 0.081 0.919 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.137 0.863 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.229 0.771 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.249 0.751 39 H 0.069 0.931 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.872 -8.776 -6.955 17.060 hybrid contribution -1.406 1.889 -0.235 2.367 sum 11.465 -6.887 -7.190 15.185 Atomic orbital electron populations 1.70015 1.08069 1.28652 1.51084 1.25745 0.95713 1.03076 0.93645 0.85706 0.79427 0.78153 0.79668 1.18595 1.17271 1.19880 1.21087 0.90632 0.93816 1.52063 0.94714 1.20303 0.93512 0.81453 0.94653 1.88018 1.20765 1.27563 1.94678 1.23453 0.82455 1.00176 1.00668 1.22395 1.02042 0.89419 0.92737 1.62068 1.03942 1.56125 1.02637 1.22268 0.99148 0.95894 0.90815 1.21483 0.94527 1.01524 0.96715 1.22123 0.96756 1.01033 0.97595 1.21191 0.90442 0.82887 0.95124 1.86572 1.85213 1.17287 1.46534 1.22702 0.96352 0.95235 0.88135 1.86252 1.31586 1.73825 1.46612 1.22047 0.88983 0.98447 0.95851 0.91863 0.97626 0.97544 0.93412 0.92427 0.86262 0.90879 0.95933 0.88683 0.89712 0.90729 0.92698 0.90178 0.77124 0.93779 0.93931 0.75145 0.93053 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 2 C 0.02 0.96 5.47 84.65 0.46 1.42 16 3 Si 0.95 42.81 27.46 68.60 1.88 44.69 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.25 -10.43 6.55 99.48 0.65 -9.78 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -31.79 9.99 25.60 0.26 -31.53 16 8 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16 9 C 0.18 8.62 4.76 71.24 0.34 8.96 16 10 O -0.39 -17.24 6.77 -148.98 -1.01 -18.25 16 11 C 0.01 0.35 5.75 71.98 0.41 0.76 16 12 C 0.06 1.74 5.93 86.30 0.51 2.26 16 13 N -0.52 -15.96 4.74 -896.35 -4.25 -20.21 16 14 C 0.05 1.18 5.06 86.32 0.44 1.62 16 15 C -0.10 -2.44 5.94 30.64 0.18 -2.26 16 16 C -0.14 -3.69 4.80 30.67 0.15 -3.55 16 17 C 0.14 4.50 0.82 -10.74 -0.01 4.49 16 18 O -0.55 -16.51 12.31 -139.89 -1.72 -18.24 16 19 C 0.05 1.70 6.17 71.98 0.44 2.15 16 20 O -0.57 -14.36 12.54 -139.89 -1.75 -16.12 16 21 C 0.07 2.69 3.20 86.33 0.28 2.97 16 22 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 23 H 0.01 0.29 7.21 -2.39 -0.02 0.27 16 24 H 0.01 0.32 7.56 -2.39 -0.02 0.30 16 25 H 0.05 1.49 6.46 -2.39 -0.02 1.47 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.12 2.48 8.06 -2.38 -0.02 2.46 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.02 0.63 6.65 -2.39 -0.02 0.62 16 30 H 0.09 1.95 8.06 -2.39 -0.02 1.93 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.76 7.80 -2.39 -0.02 1.74 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.98 7.76 -2.39 -0.02 1.96 16 35 H 0.38 9.13 8.57 -74.06 -0.64 8.49 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.40 6.77 9.12 -74.06 -0.68 6.09 16 39 H 0.05 2.09 8.12 -2.39 -0.02 2.07 16 40 H 0.06 2.69 5.58 -2.39 -0.01 2.68 16 Total: -1.00 -69.54 312.60 -3.42 -72.96 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.33 Total: 25.44 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 3.46 Total: -12.71 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.95 Total: -77.79 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -4.48 Total: -52.60 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.69 kcal Total: -69.54 -3.42 -72.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313695623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.194 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds