Wall clock time and date at job start Mon Mar 30 2020 05:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47034 * 2 1 4 4 C 1.46898 * 111.00247 * 67.35802 * 3 2 1 5 5 C 1.52992 * 109.47365 * 72.41085 * 4 3 2 6 6 C 1.53001 * 109.47373 * 174.84800 * 5 4 3 7 7 S 1.81000 * 109.47258 * 180.02562 * 6 5 4 8 8 C 1.76197 * 99.99888 * 180.02562 * 7 6 5 9 9 H 1.08006 * 120.00512 * 359.97438 * 8 7 6 10 10 C 1.38808 * 120.00255 * 180.02562 * 8 7 6 11 11 N 1.31631 * 119.99375 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00213 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46861 * 90.00323 * 12 10 8 14 14 H 1.48499 * 109.46933 * 209.99751 * 12 10 8 15 15 H 1.48498 * 109.47249 * 330.00166 * 12 10 8 16 16 C 1.46903 * 111.00097 * 303.40247 * 3 2 1 17 17 H 1.09001 * 110.43746 * 200.70266 * 16 3 2 18 18 C 1.54816 * 110.59952 * 323.32119 * 16 3 2 19 19 C 1.54991 * 102.09268 * 139.60910 * 18 16 3 20 20 O 1.44576 * 103.58894 * 323.05965 * 19 18 16 21 21 C 1.43745 * 106.86992 * 39.87382 * 20 19 18 22 22 H 1.09011 * 109.47039 * 192.64872 * 1 2 3 23 23 H 1.08995 * 109.47451 * 312.65062 * 1 2 3 24 24 H 1.08996 * 109.47313 * 72.65199 * 1 2 3 25 25 H 1.09002 * 109.47231 * 240.00163 * 2 1 3 26 26 H 1.09006 * 109.47188 * 120.00011 * 2 1 3 27 27 H 1.08999 * 109.47248 * 192.41584 * 4 3 2 28 28 H 1.09001 * 109.46952 * 312.41125 * 4 3 2 29 29 H 1.09003 * 109.47811 * 294.85122 * 5 4 3 30 30 H 1.09004 * 109.46976 * 54.84904 * 5 4 3 31 31 H 1.09002 * 109.47485 * 300.00371 * 6 5 4 32 32 H 1.09004 * 109.46984 * 60.00110 * 6 5 4 33 33 H 0.97002 * 119.99334 * 180.02562 * 11 10 8 34 34 H 1.08995 * 110.90743 * 257.81482 * 18 16 3 35 35 H 1.08999 * 110.90422 * 21.41261 * 18 16 3 36 36 H 1.09001 * 110.61744 * 81.47506 * 19 18 16 37 37 H 1.08993 * 110.62117 * 204.31926 * 19 18 16 38 38 H 1.09001 * 109.87903 * 214.17624 * 21 20 19 39 39 H 1.09001 * 109.87602 * 93.17597 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6973 2.0573 1.2657 5 6 2.5895 1.5042 2.3786 6 6 2.3450 2.2919 3.6673 7 16 3.4011 1.6379 4.9838 8 6 2.9269 2.6961 6.3104 9 1 2.1833 3.4629 6.1504 10 6 3.5097 2.5450 7.5611 11 7 4.4163 1.6108 7.7561 12 14 3.0075 3.6673 8.9674 13 1 1.8667 3.0619 9.7006 14 1 4.1543 3.8429 9.8943 15 1 2.6021 4.9890 8.4253 16 6 1.4832 2.1330 -1.1449 17 1 2.1035 3.0045 -1.3545 18 6 1.3878 1.2229 -2.3937 19 6 0.0328 1.6564 -3.0086 20 8 -0.8001 1.9060 -1.8535 21 6 0.0270 2.5594 -0.8762 22 1 -0.3634 -1.0028 0.2251 23 1 -0.3634 0.6962 0.7558 24 1 -0.3634 0.3064 -0.9809 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8682 3.1288 1.1617 28 1 0.6515 1.8788 1.5159 29 1 2.3536 0.4531 2.5450 30 1 3.6355 1.6000 2.0872 31 1 2.5809 3.3430 3.5011 32 1 1.2990 2.1960 3.9588 33 1 4.8233 1.5050 8.6302 34 1 2.2088 1.4207 -3.0828 35 1 1.3666 0.1713 -2.1079 36 1 0.1519 2.5662 -3.5971 37 1 -0.3844 0.8567 -3.6206 38 1 -0.2703 2.2516 0.1263 39 1 -0.0667 3.6409 -0.9748 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336714180.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:19 Heat of formation + Delta-G solvation = -51.308162 kcal Electronic energy + Delta-G solvation = -17745.607530 eV Core-core repulsion = 15007.201921 eV Total energy + Delta-G solvation = -2738.405609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.64879 -38.07718 -34.68373 -34.50813 -32.09742 -31.14013 -29.14839 -27.84693 -26.71195 -24.06881 -23.37781 -22.10697 -20.49205 -19.56591 -18.00299 -17.50976 -16.89795 -16.83671 -16.57728 -15.89977 -15.70530 -15.41399 -15.07788 -14.40826 -14.05162 -13.69761 -13.56303 -13.23017 -13.14794 -12.99409 -12.94847 -12.82629 -12.51517 -12.38114 -12.25686 -12.09835 -11.96600 -11.42494 -11.27955 -11.23172 -11.13298 -10.53517 -10.31688 -9.24886 -8.66666 -8.37493 -6.13747 1.31204 1.39245 1.48577 1.74264 2.28247 2.77278 2.96662 3.08828 3.33372 3.54843 3.84977 3.86470 4.11040 4.14037 4.16110 4.24937 4.31837 4.36641 4.42100 4.49071 4.60480 4.65680 4.75577 4.76949 4.84103 4.84255 4.94940 5.08508 5.13596 5.16343 5.22992 5.31729 5.39392 5.50246 5.81086 6.09636 6.13118 6.17903 7.04613 8.71999 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.048734 B = 0.003570 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.406927 B = 7840.594528 C = 8060.135357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 N -0.529 5.529 4 C 0.062 3.938 5 C -0.078 4.078 6 C -0.087 4.087 7 S -0.198 6.198 8 C -0.539 4.539 9 H 0.072 0.928 10 C 0.015 3.985 11 N -0.908 5.908 12 Si 0.995 3.005 13 H -0.268 1.268 14 H -0.274 1.274 15 H -0.263 1.263 16 C 0.052 3.948 17 H 0.103 0.897 18 C -0.161 4.161 19 C 0.041 3.959 20 O -0.391 6.391 21 C 0.005 3.995 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.271 0.729 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.054 0.243 -21.404 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.088 4.088 3 N -0.252 5.252 4 C -0.067 4.067 5 C -0.117 4.117 6 C -0.237 4.237 7 S 0.031 5.969 8 C -0.687 4.687 9 H 0.090 0.910 10 C -0.190 4.190 11 N -0.544 5.544 12 Si 0.816 3.184 13 H -0.193 1.193 14 H -0.199 1.199 15 H -0.187 1.187 16 C -0.057 4.057 17 H 0.121 0.879 18 C -0.198 4.198 19 C -0.035 4.035 20 O -0.310 6.310 21 C -0.073 4.073 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.864 -0.754 -21.319 22.409 hybrid contribution -1.606 1.566 1.329 2.607 sum -8.470 0.812 -19.989 21.725 Atomic orbital electron populations 1.23033 0.97499 1.01932 1.04535 1.22370 0.93594 0.89876 1.02994 1.62361 1.58474 1.02607 1.01766 1.22104 0.97288 0.98759 0.88563 1.21113 1.00705 0.98766 0.91149 1.23159 1.01113 1.01986 0.97432 1.84645 1.56264 1.49875 1.06108 1.23050 1.28159 1.20420 0.97066 0.90958 1.26081 0.94367 0.97425 1.01134 1.70161 1.26663 1.33067 1.24505 0.85009 0.78160 0.78265 0.76932 1.19289 1.19863 1.18681 1.23258 0.93323 0.97767 0.91320 0.87926 1.23617 0.98800 1.01442 0.95965 1.23786 0.89562 1.01613 0.88574 1.88864 1.36176 1.78981 1.27016 1.24221 0.91578 0.97444 0.94080 0.92547 0.93666 0.88700 0.88563 0.91632 0.90254 0.93643 0.92203 0.91514 0.91826 0.92200 0.91955 0.88205 0.88613 0.90959 0.87436 0.89620 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.41 8.11 71.98 0.58 -3.83 16 2 C 0.04 0.82 5.39 86.30 0.47 1.29 16 3 N -0.53 -11.80 4.88 -865.21 -4.22 -16.02 16 4 C 0.06 1.59 3.91 86.30 0.34 1.93 16 5 C -0.08 -2.57 5.18 30.59 0.16 -2.41 16 6 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 7 S -0.20 -10.70 21.44 -56.49 -1.21 -11.91 16 8 C -0.54 -31.58 9.50 67.96 0.65 -30.94 16 9 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 10 C 0.01 0.85 5.49 84.86 0.47 1.32 16 11 N -0.91 -55.38 13.22 21.65 0.29 -55.09 16 12 Si 0.99 44.30 29.55 68.60 2.03 46.33 16 13 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 16 C 0.05 0.93 3.42 45.91 0.16 1.09 16 17 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 18 C -0.16 -2.18 5.95 31.90 0.19 -1.99 16 19 C 0.04 0.54 7.45 72.66 0.54 1.08 16 20 O -0.39 -7.81 9.45 -148.98 -1.41 -9.22 16 21 C 0.00 0.09 5.74 72.35 0.42 0.51 16 22 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.04 1.06 4.79 -2.39 -0.01 1.05 16 24 H 0.09 1.90 3.44 -2.39 -0.01 1.89 16 25 H 0.10 1.70 5.89 -2.39 -0.01 1.69 16 26 H 0.07 1.57 6.59 -2.38 -0.02 1.56 16 27 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 28 H 0.05 1.16 4.84 -2.39 -0.01 1.15 16 29 H 0.06 2.02 6.86 -2.39 -0.02 2.00 16 30 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 1.35 4.37 -2.39 -0.01 1.34 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.87 3.72 -2.39 -0.01 1.86 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -67.09 303.57 0.88 -66.21 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.04 Total: 14.82 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 4.37 Total: -35.11 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -3.94 Total: -71.11 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -1.41 Total: -9.22 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -1.21 Total: -11.91 kcal Total: -67.09 0.88 -66.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336714180.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.902 kcal (2) G-P(sol) polarization free energy of solvation -67.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds