Wall clock time and date at job start Mon Mar 30 2020 05:01:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46897 * 109.47034 * 2 1
4 4 C 1.46898 * 111.00247 * 67.35802 * 3 2 1
5 5 C 1.52992 * 109.47365 * 72.41085 * 4 3 2
6 6 C 1.53001 * 109.47373 * 174.84800 * 5 4 3
7 7 S 1.81000 * 109.47258 * 180.02562 * 6 5 4
8 8 C 1.76197 * 99.99888 * 180.02562 * 7 6 5
9 9 H 1.08006 * 120.00512 * 359.97438 * 8 7 6
10 10 C 1.38808 * 120.00255 * 180.02562 * 8 7 6
11 11 N 1.31631 * 119.99375 * 359.97438 * 10 8 7
12 12 Si 1.86796 * 120.00213 * 179.97438 * 10 8 7
13 13 H 1.48504 * 109.46861 * 90.00323 * 12 10 8
14 14 H 1.48499 * 109.46933 * 209.99751 * 12 10 8
15 15 H 1.48498 * 109.47249 * 330.00166 * 12 10 8
16 16 C 1.46903 * 111.00097 * 303.40247 * 3 2 1
17 17 H 1.09001 * 110.43746 * 200.70266 * 16 3 2
18 18 C 1.54816 * 110.59952 * 323.32119 * 16 3 2
19 19 C 1.54991 * 102.09268 * 139.60910 * 18 16 3
20 20 O 1.44576 * 103.58894 * 323.05965 * 19 18 16
21 21 C 1.43745 * 106.86992 * 39.87382 * 20 19 18
22 22 H 1.09011 * 109.47039 * 192.64872 * 1 2 3
23 23 H 1.08995 * 109.47451 * 312.65062 * 1 2 3
24 24 H 1.08996 * 109.47313 * 72.65199 * 1 2 3
25 25 H 1.09002 * 109.47231 * 240.00163 * 2 1 3
26 26 H 1.09006 * 109.47188 * 120.00011 * 2 1 3
27 27 H 1.08999 * 109.47248 * 192.41584 * 4 3 2
28 28 H 1.09001 * 109.46952 * 312.41125 * 4 3 2
29 29 H 1.09003 * 109.47811 * 294.85122 * 5 4 3
30 30 H 1.09004 * 109.46976 * 54.84904 * 5 4 3
31 31 H 1.09002 * 109.47485 * 300.00371 * 6 5 4
32 32 H 1.09004 * 109.46984 * 60.00110 * 6 5 4
33 33 H 0.97002 * 119.99334 * 180.02562 * 11 10 8
34 34 H 1.08995 * 110.90743 * 257.81482 * 18 16 3
35 35 H 1.08999 * 110.90422 * 21.41261 * 18 16 3
36 36 H 1.09001 * 110.61744 * 81.47506 * 19 18 16
37 37 H 1.08993 * 110.62117 * 204.31926 * 19 18 16
38 38 H 1.09001 * 109.87903 * 214.17624 * 21 20 19
39 39 H 1.09001 * 109.87602 * 93.17597 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.6973 2.0573 1.2657
5 6 2.5895 1.5042 2.3786
6 6 2.3450 2.2919 3.6673
7 16 3.4011 1.6379 4.9838
8 6 2.9269 2.6961 6.3104
9 1 2.1833 3.4629 6.1504
10 6 3.5097 2.5450 7.5611
11 7 4.4163 1.6108 7.7561
12 14 3.0075 3.6673 8.9674
13 1 1.8667 3.0619 9.7006
14 1 4.1543 3.8429 9.8943
15 1 2.6021 4.9890 8.4253
16 6 1.4832 2.1330 -1.1449
17 1 2.1035 3.0045 -1.3545
18 6 1.3878 1.2229 -2.3937
19 6 0.0328 1.6564 -3.0086
20 8 -0.8001 1.9060 -1.8535
21 6 0.0270 2.5594 -0.8762
22 1 -0.3634 -1.0028 0.2251
23 1 -0.3634 0.6962 0.7558
24 1 -0.3634 0.3064 -0.9809
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5139 0.8900
27 1 1.8682 3.1288 1.1617
28 1 0.6515 1.8788 1.5159
29 1 2.3536 0.4531 2.5450
30 1 3.6355 1.6000 2.0872
31 1 2.5809 3.3430 3.5011
32 1 1.2990 2.1960 3.9588
33 1 4.8233 1.5050 8.6302
34 1 2.2088 1.4207 -3.0828
35 1 1.3666 0.1713 -2.1079
36 1 0.1519 2.5662 -3.5971
37 1 -0.3844 0.8567 -3.6206
38 1 -0.2703 2.2516 0.1263
39 1 -0.0667 3.6409 -0.9748
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000336714180.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:01:19
Heat of formation + Delta-G solvation = -51.308162 kcal
Electronic energy + Delta-G solvation = -17745.607530 eV
Core-core repulsion = 15007.201921 eV
Total energy + Delta-G solvation = -2738.405609 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.64879 -38.07718 -34.68373 -34.50813 -32.09742 -31.14013 -29.14839 -27.84693
-26.71195 -24.06881 -23.37781 -22.10697 -20.49205 -19.56591 -18.00299 -17.50976
-16.89795 -16.83671 -16.57728 -15.89977 -15.70530 -15.41399 -15.07788 -14.40826
-14.05162 -13.69761 -13.56303 -13.23017 -13.14794 -12.99409 -12.94847 -12.82629
-12.51517 -12.38114 -12.25686 -12.09835 -11.96600 -11.42494 -11.27955 -11.23172
-11.13298 -10.53517 -10.31688 -9.24886 -8.66666 -8.37493 -6.13747 1.31204
1.39245 1.48577 1.74264 2.28247 2.77278 2.96662 3.08828 3.33372
3.54843 3.84977 3.86470 4.11040 4.14037 4.16110 4.24937 4.31837
4.36641 4.42100 4.49071 4.60480 4.65680 4.75577 4.76949 4.84103
4.84255 4.94940 5.08508 5.13596 5.16343 5.22992 5.31729 5.39392
5.50246 5.81086 6.09636 6.13118 6.17903 7.04613 8.71999
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.048734 B = 0.003570 C = 0.003473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 574.406927 B = 7840.594528 C = 8060.135357
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.039 3.961
3 N -0.529 5.529
4 C 0.062 3.938
5 C -0.078 4.078
6 C -0.087 4.087
7 S -0.198 6.198
8 C -0.539 4.539
9 H 0.072 0.928
10 C 0.015 3.985
11 N -0.908 5.908
12 Si 0.995 3.005
13 H -0.268 1.268
14 H -0.274 1.274
15 H -0.263 1.263
16 C 0.052 3.948
17 H 0.103 0.897
18 C -0.161 4.161
19 C 0.041 3.959
20 O -0.391 6.391
21 C 0.005 3.995
22 H 0.055 0.945
23 H 0.044 0.956
24 H 0.095 0.905
25 H 0.096 0.904
26 H 0.065 0.935
27 H 0.079 0.921
28 H 0.046 0.954
29 H 0.059 0.941
30 H 0.066 0.934
31 H 0.063 0.937
32 H 0.059 0.941
33 H 0.271 0.729
34 H 0.099 0.901
35 H 0.096 0.904
36 H 0.072 0.928
37 H 0.108 0.892
38 H 0.086 0.914
39 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.054 0.243 -21.404 22.870
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.270 4.270
2 C -0.088 4.088
3 N -0.252 5.252
4 C -0.067 4.067
5 C -0.117 4.117
6 C -0.237 4.237
7 S 0.031 5.969
8 C -0.687 4.687
9 H 0.090 0.910
10 C -0.190 4.190
11 N -0.544 5.544
12 Si 0.816 3.184
13 H -0.193 1.193
14 H -0.199 1.199
15 H -0.187 1.187
16 C -0.057 4.057
17 H 0.121 0.879
18 C -0.198 4.198
19 C -0.035 4.035
20 O -0.310 6.310
21 C -0.073 4.073
22 H 0.075 0.925
23 H 0.063 0.937
24 H 0.113 0.887
25 H 0.114 0.886
26 H 0.084 0.916
27 H 0.097 0.903
28 H 0.064 0.936
29 H 0.078 0.922
30 H 0.085 0.915
31 H 0.082 0.918
32 H 0.078 0.922
33 H 0.080 0.920
34 H 0.118 0.882
35 H 0.114 0.886
36 H 0.090 0.910
37 H 0.126 0.874
38 H 0.104 0.896
39 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -6.864 -0.754 -21.319 22.409
hybrid contribution -1.606 1.566 1.329 2.607
sum -8.470 0.812 -19.989 21.725
Atomic orbital electron populations
1.23033 0.97499 1.01932 1.04535 1.22370 0.93594 0.89876 1.02994
1.62361 1.58474 1.02607 1.01766 1.22104 0.97288 0.98759 0.88563
1.21113 1.00705 0.98766 0.91149 1.23159 1.01113 1.01986 0.97432
1.84645 1.56264 1.49875 1.06108 1.23050 1.28159 1.20420 0.97066
0.90958 1.26081 0.94367 0.97425 1.01134 1.70161 1.26663 1.33067
1.24505 0.85009 0.78160 0.78265 0.76932 1.19289 1.19863 1.18681
1.23258 0.93323 0.97767 0.91320 0.87926 1.23617 0.98800 1.01442
0.95965 1.23786 0.89562 1.01613 0.88574 1.88864 1.36176 1.78981
1.27016 1.24221 0.91578 0.97444 0.94080 0.92547 0.93666 0.88700
0.88563 0.91632 0.90254 0.93643 0.92203 0.91514 0.91826 0.92200
0.91955 0.88205 0.88613 0.90959 0.87436 0.89620 0.91826
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -4.41 8.11 71.98 0.58 -3.83 16
2 C 0.04 0.82 5.39 86.30 0.47 1.29 16
3 N -0.53 -11.80 4.88 -865.21 -4.22 -16.02 16
4 C 0.06 1.59 3.91 86.30 0.34 1.93 16
5 C -0.08 -2.57 5.18 30.59 0.16 -2.41 16
6 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16
7 S -0.20 -10.70 21.44 -56.49 -1.21 -11.91 16
8 C -0.54 -31.58 9.50 67.96 0.65 -30.94 16
9 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16
10 C 0.01 0.85 5.49 84.86 0.47 1.32 16
11 N -0.91 -55.38 13.22 21.65 0.29 -55.09 16
12 Si 0.99 44.30 29.55 68.60 2.03 46.33 16
13 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16
14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16
15 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16
16 C 0.05 0.93 3.42 45.91 0.16 1.09 16
17 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
18 C -0.16 -2.18 5.95 31.90 0.19 -1.99 16
19 C 0.04 0.54 7.45 72.66 0.54 1.08 16
20 O -0.39 -7.81 9.45 -148.98 -1.41 -9.22 16
21 C 0.00 0.09 5.74 72.35 0.42 0.51 16
22 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16
23 H 0.04 1.06 4.79 -2.39 -0.01 1.05 16
24 H 0.09 1.90 3.44 -2.39 -0.01 1.89 16
25 H 0.10 1.70 5.89 -2.39 -0.01 1.69 16
26 H 0.07 1.57 6.59 -2.38 -0.02 1.56 16
27 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16
28 H 0.05 1.16 4.84 -2.39 -0.01 1.15 16
29 H 0.06 2.02 6.86 -2.39 -0.02 2.00 16
30 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16
31 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16
32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16
33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16
34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16
35 H 0.10 1.35 4.37 -2.39 -0.01 1.34 16
36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16
38 H 0.09 1.87 3.72 -2.39 -0.01 1.86 16
39 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16
Total: -1.00 -67.09 303.57 0.88 -66.21
By element:
Atomic # 1 Polarization: 13.78 SS G_CDS: 1.04 Total: 14.82 kcal
Atomic # 6 Polarization: -39.48 SS G_CDS: 4.37 Total: -35.11 kcal
Atomic # 7 Polarization: -67.18 SS G_CDS: -3.94 Total: -71.11 kcal
Atomic # 8 Polarization: -7.81 SS G_CDS: -1.41 Total: -9.22 kcal
Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal
Atomic # 16 Polarization: -10.70 SS G_CDS: -1.21 Total: -11.91 kcal
Total: -67.09 0.88 -66.21 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000336714180.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.902 kcal
(2) G-P(sol) polarization free energy of solvation -67.088 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.211 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.308 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds