Wall clock time and date at job start Mon Mar 30 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.50508 * 2 1 4 4 C 1.53099 * 109.50622 * 239.87364 * 2 1 3 5 5 N 1.47016 * 109.25460 * 296.91289 * 4 2 1 6 6 C 1.46896 * 111.00019 * 177.61394 * 5 4 2 7 7 C 1.53000 * 109.46983 * 199.40469 * 6 5 4 8 8 O 1.42899 * 109.47380 * 65.06476 * 7 6 5 9 9 C 1.42897 * 113.99922 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47231 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00005 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00153 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99951 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99975 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47362 * 89.99579 * 14 12 10 16 16 H 1.48502 * 109.47155 * 209.99890 * 14 12 10 17 17 H 1.48509 * 109.47241 * 329.99416 * 14 12 10 18 18 C 1.47019 * 110.75245 * 301.38569 * 5 4 2 19 19 C 1.53095 * 109.25827 * 58.61831 * 18 5 4 20 20 H 1.08994 * 109.51039 * 63.08311 * 19 18 5 21 21 C 1.53002 * 109.50680 * 183.22047 * 19 18 5 22 22 O 1.42902 * 109.47116 * 185.00181 * 21 19 18 23 23 O 1.43016 * 109.50734 * 120.08532 * 2 1 3 24 24 H 1.09006 * 109.47127 * 299.91348 * 1 2 3 25 25 H 1.09005 * 109.47009 * 59.91388 * 1 2 3 26 26 H 1.08995 * 109.47238 * 179.91241 * 1 2 3 27 27 H 1.09002 * 109.50316 * 176.97993 * 4 2 1 28 28 H 1.08999 * 109.50999 * 56.84383 * 4 2 1 29 29 H 1.08997 * 109.47891 * 79.39788 * 6 5 4 30 30 H 1.09004 * 109.46605 * 319.39691 * 6 5 4 31 31 H 1.08999 * 109.47202 * 305.05832 * 7 6 5 32 32 H 1.09004 * 109.46731 * 185.06524 * 7 6 5 33 33 H 1.09003 * 109.47592 * 59.99744 * 9 8 7 34 34 H 1.09001 * 109.47343 * 299.99919 * 9 8 7 35 35 H 0.97001 * 119.99834 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.50711 * 178.55402 * 18 5 4 37 37 H 1.09001 * 109.50461 * 298.63938 * 18 5 4 38 38 H 1.08999 * 109.46948 * 304.99378 * 21 19 18 39 39 H 1.09000 * 109.47267 * 64.99730 * 21 19 18 40 40 H 0.96700 * 113.99915 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7243 -1.2482 5 7 1.6110 -2.1294 -1.2037 6 6 2.0336 -2.8479 -2.4132 7 6 1.1920 -4.1155 -2.5737 8 8 -0.1713 -3.7559 -2.8062 9 6 -1.0470 -4.8730 -2.9714 10 6 -2.4511 -4.3798 -3.2087 11 1 -2.6545 -3.3193 -3.2308 12 6 -3.4763 -5.2823 -3.3967 13 7 -3.2288 -6.5737 -3.3694 14 14 -5.2166 -4.6710 -3.6917 15 1 -5.4385 -4.4933 -5.1492 16 1 -6.1862 -5.6624 -3.1605 17 1 -5.4086 -3.3711 -2.9996 18 6 2.1185 -2.7916 0.0068 19 6 1.6065 -2.0465 1.2423 20 1 0.5188 -2.1059 1.2785 21 6 2.1961 -2.6821 2.5030 22 8 1.6284 -2.0626 3.6589 23 8 2.0076 -0.6758 1.1665 24 1 -0.3634 0.5125 0.8908 25 1 -0.3633 0.5152 -0.8893 26 1 -0.3633 -1.0276 -0.0016 27 1 3.1299 -0.6777 -1.2757 28 1 1.6331 -0.2468 -2.1390 29 1 3.0857 -3.1190 -2.3260 30 1 1.8945 -2.2069 -3.2838 31 1 1.2600 -4.7142 -1.6654 32 1 1.5643 -4.6943 -3.4190 33 1 -1.0256 -5.4878 -2.0715 34 1 -0.7211 -5.4671 -3.8251 35 1 -3.9500 -7.2086 -3.5021 36 1 1.7669 -3.8230 0.0321 37 1 3.2084 -2.7787 -0.0011 38 1 1.9680 -3.7479 2.5132 39 1 3.2770 -2.5417 2.5093 40 1 1.9576 -2.4165 4.4965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339119371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:24 Heat of formation + Delta-G solvation = -137.455525 kcal Electronic energy + Delta-G solvation = -20413.233866 eV Core-core repulsion = 17228.339757 eV Total energy + Delta-G solvation = -3184.894110 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.99748 -37.13055 -36.63331 -35.27912 -32.69370 -32.58408 -30.38111 -28.65121 -26.81182 -26.26461 -24.28526 -22.51135 -22.22745 -21.03790 -19.46024 -17.48788 -16.59331 -16.55491 -16.33066 -15.65391 -15.23213 -14.77800 -14.64057 -14.48433 -14.24339 -14.04115 -13.36769 -13.31568 -13.05071 -12.45353 -12.07739 -11.85568 -11.78698 -11.66093 -11.25851 -11.15420 -11.04949 -10.81052 -10.73966 -10.51330 -10.30288 -10.07717 -9.97564 -9.45991 -9.05188 -8.76787 -8.16630 -8.09109 -6.07408 -4.08212 3.32750 3.37665 3.43665 3.68939 3.71725 4.22834 4.38249 4.82166 4.86990 4.99081 5.02719 5.13107 5.14530 5.27633 5.29295 5.32798 5.43842 5.45971 5.57274 5.61554 5.73466 5.76812 5.95732 5.99821 6.03167 6.09048 6.17103 6.26696 6.59532 7.08681 7.10760 7.16406 7.26125 7.47360 7.51755 7.84423 8.20743 8.65664 9.06481 9.56628 11.04326 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.004733 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.632573 B = 5914.834324 C = 6095.124607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.091 3.909 3 H 0.101 0.899 4 C 0.025 3.975 5 N -0.517 5.517 6 C 0.061 3.939 7 C 0.069 3.931 8 O -0.380 6.380 9 C 0.195 3.805 10 C -0.510 4.510 11 H 0.066 0.934 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.906 3.094 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.271 1.271 18 C 0.027 3.973 19 C 0.091 3.909 20 H 0.082 0.918 21 C 0.086 3.914 22 O -0.564 6.564 23 O -0.372 6.372 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.263 0.737 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.752 8.553 8.802 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.033 3.967 3 H 0.119 0.881 4 C -0.104 4.104 5 N -0.242 5.242 6 C -0.066 4.066 7 C -0.009 4.009 8 O -0.299 6.299 9 C 0.120 3.880 10 C -0.548 4.548 11 H 0.084 0.916 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.734 3.266 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.101 4.101 19 C 0.033 3.967 20 H 0.100 0.900 21 C 0.008 3.992 22 O -0.369 6.369 23 O -0.292 6.292 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 12.869 8.994 8.463 17.836 hybrid contribution 0.242 -0.701 -0.095 0.748 sum 13.111 8.293 8.368 17.626 Atomic orbital electron populations 1.22277 0.95021 1.04311 1.01716 1.22256 0.94918 0.95445 0.84079 0.88101 1.22817 0.97855 0.89971 0.99710 1.62016 1.59418 1.01244 1.01488 1.22181 0.95582 0.96326 0.92539 1.22205 0.86062 0.94370 0.98276 1.87937 1.15048 1.34434 1.92502 1.20167 0.88518 0.84495 0.94796 1.21057 0.91243 0.93960 1.48529 0.91560 1.24939 0.99509 0.94692 0.95395 1.69964 1.32894 1.00871 1.50290 0.86359 0.83208 0.78622 0.78444 1.20522 1.21133 1.19599 1.22699 0.97408 0.99561 0.90469 1.22103 1.00352 0.82161 0.92126 0.90046 1.22117 0.96769 0.95404 0.84944 1.86557 1.69547 1.64887 1.15866 1.88036 1.75303 1.22816 1.43007 0.92662 0.91672 0.90289 0.94610 0.89425 0.94026 0.90006 0.94770 0.94306 0.97973 0.98071 0.92751 0.89273 0.94391 0.91942 0.93130 0.77656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 8.88 37.16 0.33 -2.13 16 2 C 0.09 1.18 3.92 -26.68 -0.10 1.08 16 3 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.02 0.32 5.01 -3.71 -0.02 0.30 16 5 N -0.52 -7.82 3.97 -234.31 -0.93 -8.75 16 6 C 0.06 0.91 5.38 -3.83 -0.02 0.89 16 7 C 0.07 1.28 6.13 37.16 0.23 1.50 16 8 O -0.38 -9.23 10.27 -35.23 -0.36 -9.59 16 9 C 0.19 5.40 5.69 36.01 0.20 5.60 16 10 C -0.51 -15.20 9.43 -34.44 -0.32 -15.52 16 11 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 14 Si 0.91 22.13 29.54 -169.99 -5.02 17.10 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.03 0.37 4.75 -3.71 -0.02 0.35 16 19 C 0.09 1.25 2.69 -26.68 -0.07 1.18 16 20 H 0.08 1.30 6.49 -51.93 -0.34 0.96 16 21 C 0.09 0.96 6.71 37.16 0.25 1.21 16 22 O -0.56 -6.65 13.63 -39.73 -0.54 -7.19 16 23 O -0.37 -5.43 10.25 -39.73 -0.41 -5.84 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.32 6.13 -51.93 -0.32 1.00 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 1.09 8.02 -51.93 -0.42 0.67 16 29 H 0.04 0.52 7.99 -51.93 -0.41 0.10 16 30 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16 31 H 0.03 0.62 6.75 -51.93 -0.35 0.27 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 1.22 6.74 -51.93 -0.35 0.87 16 37 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.38 2.44 9.12 45.56 0.42 2.85 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -34.02 322.97 -7.25 -41.28 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.95 Total: -1.39 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 0.36 Total: -4.02 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.19 Total: -35.22 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -1.31 Total: -22.63 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.02 -7.25 -41.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339119371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.177 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds