Wall clock time and date at job start Mon Mar 30 2020 05:43:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09003 * 109.50508 * 2 1
4 4 C 1.53099 * 109.50622 * 239.87364 * 2 1 3
5 5 N 1.47016 * 109.25460 * 296.91289 * 4 2 1
6 6 C 1.46896 * 111.00019 * 177.61394 * 5 4 2
7 7 C 1.53000 * 109.46983 * 199.40469 * 6 5 4
8 8 O 1.42899 * 109.47380 * 65.06476 * 7 6 5
9 9 C 1.42897 * 113.99922 * 179.97438 * 8 7 6
10 10 C 1.50701 * 109.47231 * 179.97438 * 9 8 7
11 11 H 1.08003 * 120.00005 * 359.97438 * 10 9 8
12 12 C 1.37875 * 120.00153 * 180.02562 * 10 9 8
13 13 N 1.31511 * 119.99951 * 359.97438 * 12 10 9
14 14 Si 1.86798 * 119.99975 * 180.02562 * 12 10 9
15 15 H 1.48502 * 109.47362 * 89.99579 * 14 12 10
16 16 H 1.48502 * 109.47155 * 209.99890 * 14 12 10
17 17 H 1.48509 * 109.47241 * 329.99416 * 14 12 10
18 18 C 1.47019 * 110.75245 * 301.38569 * 5 4 2
19 19 C 1.53095 * 109.25827 * 58.61831 * 18 5 4
20 20 H 1.08994 * 109.51039 * 63.08311 * 19 18 5
21 21 C 1.53002 * 109.50680 * 183.22047 * 19 18 5
22 22 O 1.42902 * 109.47116 * 185.00181 * 21 19 18
23 23 O 1.43016 * 109.50734 * 120.08532 * 2 1 3
24 24 H 1.09006 * 109.47127 * 299.91348 * 1 2 3
25 25 H 1.09005 * 109.47009 * 59.91388 * 1 2 3
26 26 H 1.08995 * 109.47238 * 179.91241 * 1 2 3
27 27 H 1.09002 * 109.50316 * 176.97993 * 4 2 1
28 28 H 1.08999 * 109.50999 * 56.84383 * 4 2 1
29 29 H 1.08997 * 109.47891 * 79.39788 * 6 5 4
30 30 H 1.09004 * 109.46605 * 319.39691 * 6 5 4
31 31 H 1.08999 * 109.47202 * 305.05832 * 7 6 5
32 32 H 1.09004 * 109.46731 * 185.06524 * 7 6 5
33 33 H 1.09003 * 109.47592 * 59.99744 * 9 8 7
34 34 H 1.09001 * 109.47343 * 299.99919 * 9 8 7
35 35 H 0.97001 * 119.99834 * 180.02562 * 13 12 10
36 36 H 1.08998 * 109.50711 * 178.55402 * 18 5 4
37 37 H 1.09001 * 109.50461 * 298.63938 * 18 5 4
38 38 H 1.08999 * 109.46948 * 304.99378 * 21 19 18
39 39 H 1.09000 * 109.47267 * 64.99730 * 21 19 18
40 40 H 0.96700 * 113.99915 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8940 1.0275 0.0000
4 6 2.0413 -0.7243 -1.2482
5 7 1.6110 -2.1294 -1.2037
6 6 2.0336 -2.8479 -2.4132
7 6 1.1920 -4.1155 -2.5737
8 8 -0.1713 -3.7559 -2.8062
9 6 -1.0470 -4.8730 -2.9714
10 6 -2.4511 -4.3798 -3.2087
11 1 -2.6545 -3.3193 -3.2308
12 6 -3.4763 -5.2823 -3.3967
13 7 -3.2288 -6.5737 -3.3694
14 14 -5.2166 -4.6710 -3.6917
15 1 -5.4385 -4.4933 -5.1492
16 1 -6.1862 -5.6624 -3.1605
17 1 -5.4086 -3.3711 -2.9996
18 6 2.1185 -2.7916 0.0068
19 6 1.6065 -2.0465 1.2423
20 1 0.5188 -2.1059 1.2785
21 6 2.1961 -2.6821 2.5030
22 8 1.6284 -2.0626 3.6589
23 8 2.0076 -0.6758 1.1665
24 1 -0.3634 0.5125 0.8908
25 1 -0.3633 0.5152 -0.8893
26 1 -0.3633 -1.0276 -0.0016
27 1 3.1299 -0.6777 -1.2757
28 1 1.6331 -0.2468 -2.1390
29 1 3.0857 -3.1190 -2.3260
30 1 1.8945 -2.2069 -3.2838
31 1 1.2600 -4.7142 -1.6654
32 1 1.5643 -4.6943 -3.4190
33 1 -1.0256 -5.4878 -2.0715
34 1 -0.7211 -5.4671 -3.8251
35 1 -3.9500 -7.2086 -3.5021
36 1 1.7669 -3.8230 0.0321
37 1 3.2084 -2.7787 -0.0011
38 1 1.9680 -3.7479 2.5132
39 1 3.2770 -2.5417 2.5093
40 1 1.9576 -2.4165 4.4965
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000339119371.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:43:24
Heat of formation + Delta-G solvation = -137.455525 kcal
Electronic energy + Delta-G solvation = -20413.233866 eV
Core-core repulsion = 17228.339757 eV
Total energy + Delta-G solvation = -3184.894110 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.99748 -37.13055 -36.63331 -35.27912 -32.69370 -32.58408 -30.38111 -28.65121
-26.81182 -26.26461 -24.28526 -22.51135 -22.22745 -21.03790 -19.46024 -17.48788
-16.59331 -16.55491 -16.33066 -15.65391 -15.23213 -14.77800 -14.64057 -14.48433
-14.24339 -14.04115 -13.36769 -13.31568 -13.05071 -12.45353 -12.07739 -11.85568
-11.78698 -11.66093 -11.25851 -11.15420 -11.04949 -10.81052 -10.73966 -10.51330
-10.30288 -10.07717 -9.97564 -9.45991 -9.05188 -8.76787 -8.16630 -8.09109
-6.07408 -4.08212 3.32750 3.37665 3.43665 3.68939 3.71725 4.22834
4.38249 4.82166 4.86990 4.99081 5.02719 5.13107 5.14530 5.27633
5.29295 5.32798 5.43842 5.45971 5.57274 5.61554 5.73466 5.76812
5.95732 5.99821 6.03167 6.09048 6.17103 6.26696 6.59532 7.08681
7.10760 7.16406 7.26125 7.47360 7.51755 7.84423 8.20743 8.65664
9.06481 9.56628 11.04326
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.021022 B = 0.004733 C = 0.004593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1331.632573 B = 5914.834324 C = 6095.124607
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.091 3.909
3 H 0.101 0.899
4 C 0.025 3.975
5 N -0.517 5.517
6 C 0.061 3.939
7 C 0.069 3.931
8 O -0.380 6.380
9 C 0.195 3.805
10 C -0.510 4.510
11 H 0.066 0.934
12 C 0.055 3.945
13 N -0.901 5.901
14 Si 0.906 3.094
15 H -0.279 1.279
16 H -0.286 1.286
17 H -0.271 1.271
18 C 0.027 3.973
19 C 0.091 3.909
20 H 0.082 0.918
21 C 0.086 3.914
22 O -0.564 6.564
23 O -0.372 6.372
24 H 0.054 0.946
25 H 0.064 0.936
26 H 0.078 0.922
27 H 0.036 0.964
28 H 0.087 0.913
29 H 0.042 0.958
30 H 0.081 0.919
31 H 0.034 0.966
32 H 0.039 0.961
33 H 0.002 0.998
34 H 0.002 0.998
35 H 0.263 0.737
36 H 0.089 0.911
37 H 0.038 0.962
38 H 0.063 0.937
39 H 0.050 0.950
40 H 0.377 0.623
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.752 8.553 8.802 18.432
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C 0.033 3.967
3 H 0.119 0.881
4 C -0.104 4.104
5 N -0.242 5.242
6 C -0.066 4.066
7 C -0.009 4.009
8 O -0.299 6.299
9 C 0.120 3.880
10 C -0.548 4.548
11 H 0.084 0.916
12 C -0.145 4.145
13 N -0.540 5.540
14 Si 0.734 3.266
15 H -0.205 1.205
16 H -0.211 1.211
17 H -0.196 1.196
18 C -0.101 4.101
19 C 0.033 3.967
20 H 0.100 0.900
21 C 0.008 3.992
22 O -0.369 6.369
23 O -0.292 6.292
24 H 0.073 0.927
25 H 0.083 0.917
26 H 0.097 0.903
27 H 0.054 0.946
28 H 0.106 0.894
29 H 0.060 0.940
30 H 0.100 0.900
31 H 0.052 0.948
32 H 0.057 0.943
33 H 0.020 0.980
34 H 0.019 0.981
35 H 0.072 0.928
36 H 0.107 0.893
37 H 0.056 0.944
38 H 0.081 0.919
39 H 0.069 0.931
40 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges 12.869 8.994 8.463 17.836
hybrid contribution 0.242 -0.701 -0.095 0.748
sum 13.111 8.293 8.368 17.626
Atomic orbital electron populations
1.22277 0.95021 1.04311 1.01716 1.22256 0.94918 0.95445 0.84079
0.88101 1.22817 0.97855 0.89971 0.99710 1.62016 1.59418 1.01244
1.01488 1.22181 0.95582 0.96326 0.92539 1.22205 0.86062 0.94370
0.98276 1.87937 1.15048 1.34434 1.92502 1.20167 0.88518 0.84495
0.94796 1.21057 0.91243 0.93960 1.48529 0.91560 1.24939 0.99509
0.94692 0.95395 1.69964 1.32894 1.00871 1.50290 0.86359 0.83208
0.78622 0.78444 1.20522 1.21133 1.19599 1.22699 0.97408 0.99561
0.90469 1.22103 1.00352 0.82161 0.92126 0.90046 1.22117 0.96769
0.95404 0.84944 1.86557 1.69547 1.64887 1.15866 1.88036 1.75303
1.22816 1.43007 0.92662 0.91672 0.90289 0.94610 0.89425 0.94026
0.90006 0.94770 0.94306 0.97973 0.98071 0.92751 0.89273 0.94391
0.91942 0.93130 0.77656
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.46 8.88 37.16 0.33 -2.13 16
2 C 0.09 1.18 3.92 -26.68 -0.10 1.08 16
3 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16
4 C 0.02 0.32 5.01 -3.71 -0.02 0.30 16
5 N -0.52 -7.82 3.97 -234.31 -0.93 -8.75 16
6 C 0.06 0.91 5.38 -3.83 -0.02 0.89 16
7 C 0.07 1.28 6.13 37.16 0.23 1.50 16
8 O -0.38 -9.23 10.27 -35.23 -0.36 -9.59 16
9 C 0.19 5.40 5.69 36.01 0.20 5.60 16
10 C -0.51 -15.20 9.43 -34.44 -0.32 -15.52 16
11 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16
12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
13 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16
14 Si 0.91 22.13 29.54 -169.99 -5.02 17.10 16
15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
18 C 0.03 0.37 4.75 -3.71 -0.02 0.35 16
19 C 0.09 1.25 2.69 -26.68 -0.07 1.18 16
20 H 0.08 1.30 6.49 -51.93 -0.34 0.96 16
21 C 0.09 0.96 6.71 37.16 0.25 1.21 16
22 O -0.56 -6.65 13.63 -39.73 -0.54 -7.19 16
23 O -0.37 -5.43 10.25 -39.73 -0.41 -5.84 16
24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
26 H 0.08 1.32 6.13 -51.93 -0.32 1.00 16
27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16
28 H 0.09 1.09 8.02 -51.93 -0.42 0.67 16
29 H 0.04 0.52 7.99 -51.93 -0.41 0.10 16
30 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16
31 H 0.03 0.62 6.75 -51.93 -0.35 0.27 16
32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
33 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16
34 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16
35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
36 H 0.09 1.22 6.74 -51.93 -0.35 0.87 16
37 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16
38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
40 H 0.38 2.44 9.12 45.56 0.42 2.85 16
LS Contribution 322.97 15.07 4.87 4.87
Total: -1.00 -34.02 322.97 -7.25 -41.28
By element:
Atomic # 1 Polarization: 4.56 SS G_CDS: -5.95 Total: -1.39 kcal
Atomic # 6 Polarization: -4.37 SS G_CDS: 0.36 Total: -4.02 kcal
Atomic # 7 Polarization: -35.02 SS G_CDS: -0.19 Total: -35.22 kcal
Atomic # 8 Polarization: -21.32 SS G_CDS: -1.31 Total: -22.63 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal
Total LS contribution 4.87 Total: 4.87 kcal
Total: -34.02 -7.25 -41.28 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000339119371.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.177 kcal
(2) G-P(sol) polarization free energy of solvation -34.025 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.202 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.456 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds