Wall clock time and date at job start Mon Mar 30 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.50508 * 2 1 4 4 C 1.53099 * 109.50622 * 239.87364 * 2 1 3 5 5 N 1.47016 * 109.25460 * 296.91289 * 4 2 1 6 6 C 1.46896 * 111.00019 * 177.61394 * 5 4 2 7 7 C 1.53000 * 109.46983 * 199.40469 * 6 5 4 8 8 O 1.42899 * 109.47380 * 65.06476 * 7 6 5 9 9 C 1.42897 * 113.99922 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47231 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00005 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00153 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99951 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99975 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47362 * 89.99579 * 14 12 10 16 16 H 1.48502 * 109.47155 * 209.99890 * 14 12 10 17 17 H 1.48509 * 109.47241 * 329.99416 * 14 12 10 18 18 C 1.47019 * 110.75245 * 301.38569 * 5 4 2 19 19 C 1.53095 * 109.25827 * 58.61831 * 18 5 4 20 20 H 1.08994 * 109.51039 * 63.08311 * 19 18 5 21 21 C 1.53002 * 109.50680 * 183.22047 * 19 18 5 22 22 O 1.42902 * 109.47116 * 185.00181 * 21 19 18 23 23 O 1.43016 * 109.50734 * 120.08532 * 2 1 3 24 24 H 1.09006 * 109.47127 * 299.91348 * 1 2 3 25 25 H 1.09005 * 109.47009 * 59.91388 * 1 2 3 26 26 H 1.08995 * 109.47238 * 179.91241 * 1 2 3 27 27 H 1.09002 * 109.50316 * 176.97993 * 4 2 1 28 28 H 1.08999 * 109.50999 * 56.84383 * 4 2 1 29 29 H 1.08997 * 109.47891 * 79.39788 * 6 5 4 30 30 H 1.09004 * 109.46605 * 319.39691 * 6 5 4 31 31 H 1.08999 * 109.47202 * 305.05832 * 7 6 5 32 32 H 1.09004 * 109.46731 * 185.06524 * 7 6 5 33 33 H 1.09003 * 109.47592 * 59.99744 * 9 8 7 34 34 H 1.09001 * 109.47343 * 299.99919 * 9 8 7 35 35 H 0.97001 * 119.99834 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.50711 * 178.55402 * 18 5 4 37 37 H 1.09001 * 109.50461 * 298.63938 * 18 5 4 38 38 H 1.08999 * 109.46948 * 304.99378 * 21 19 18 39 39 H 1.09000 * 109.47267 * 64.99730 * 21 19 18 40 40 H 0.96700 * 113.99915 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7243 -1.2482 5 7 1.6110 -2.1294 -1.2037 6 6 2.0336 -2.8479 -2.4132 7 6 1.1920 -4.1155 -2.5737 8 8 -0.1713 -3.7559 -2.8062 9 6 -1.0470 -4.8730 -2.9714 10 6 -2.4511 -4.3798 -3.2087 11 1 -2.6545 -3.3193 -3.2308 12 6 -3.4763 -5.2823 -3.3967 13 7 -3.2288 -6.5737 -3.3694 14 14 -5.2166 -4.6710 -3.6917 15 1 -5.4385 -4.4933 -5.1492 16 1 -6.1862 -5.6624 -3.1605 17 1 -5.4086 -3.3711 -2.9996 18 6 2.1185 -2.7916 0.0068 19 6 1.6065 -2.0465 1.2423 20 1 0.5188 -2.1059 1.2785 21 6 2.1961 -2.6821 2.5030 22 8 1.6284 -2.0626 3.6589 23 8 2.0076 -0.6758 1.1665 24 1 -0.3634 0.5125 0.8908 25 1 -0.3633 0.5152 -0.8893 26 1 -0.3633 -1.0276 -0.0016 27 1 3.1299 -0.6777 -1.2757 28 1 1.6331 -0.2468 -2.1390 29 1 3.0857 -3.1190 -2.3260 30 1 1.8945 -2.2069 -3.2838 31 1 1.2600 -4.7142 -1.6654 32 1 1.5643 -4.6943 -3.4190 33 1 -1.0256 -5.4878 -2.0715 34 1 -0.7211 -5.4671 -3.8251 35 1 -3.9500 -7.2086 -3.5021 36 1 1.7669 -3.8230 0.0321 37 1 3.2084 -2.7787 -0.0011 38 1 1.9680 -3.7479 2.5132 39 1 3.2770 -2.5417 2.5093 40 1 1.9576 -2.4165 4.4965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339119371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:24 Heat of formation + Delta-G solvation = -164.926966 kcal Electronic energy + Delta-G solvation = -20414.425117 eV Core-core repulsion = 17228.339757 eV Total energy + Delta-G solvation = -3186.085361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06543 -38.68686 -37.66415 -36.60732 -34.86507 -33.63555 -31.65520 -30.07021 -28.75876 -27.27314 -25.51571 -24.45923 -23.48876 -22.32158 -20.50984 -18.61755 -18.38467 -17.71221 -17.60091 -17.33230 -16.63721 -16.25972 -16.01427 -15.79566 -15.61318 -15.05599 -14.87757 -14.67903 -14.33003 -13.80934 -13.49789 -13.36351 -13.03655 -12.90728 -12.78464 -12.73429 -12.55129 -12.36518 -12.19128 -12.07364 -11.76129 -11.35959 -11.21974 -10.94557 -10.84657 -10.57075 -10.16470 -9.22668 -8.31393 -6.42886 1.39383 1.42154 1.54285 2.35217 2.64833 2.74549 3.02449 3.24243 3.33557 3.84947 3.92890 4.03490 4.10788 4.15007 4.25676 4.30972 4.37291 4.42478 4.46385 4.51457 4.58538 4.61957 4.72075 4.76823 4.83199 4.92719 4.95459 4.97203 5.08848 5.20474 5.41724 5.56249 5.97595 6.02179 6.04282 6.21753 6.58272 6.87992 6.91531 7.29447 8.81016 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.004733 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.632573 B = 5914.834324 C = 6095.124607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.088 3.912 3 H 0.127 0.873 4 C 0.029 3.971 5 N -0.547 5.547 6 C 0.071 3.929 7 C 0.059 3.941 8 O -0.395 6.395 9 C 0.211 3.789 10 C -0.544 4.544 11 H 0.059 0.941 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.980 3.020 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.267 1.267 18 C 0.032 3.968 19 C 0.088 3.912 20 H 0.049 0.951 21 C 0.088 3.912 22 O -0.588 6.588 23 O -0.382 6.382 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.048 0.952 33 H -0.019 1.019 34 H -0.016 1.016 35 H 0.270 0.730 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.390 9.463 8.877 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.031 3.969 3 H 0.145 0.855 4 C -0.099 4.099 5 N -0.272 5.272 6 C -0.056 4.056 7 C -0.018 4.018 8 O -0.314 6.314 9 C 0.135 3.865 10 C -0.582 4.582 11 H 0.077 0.923 12 C -0.191 4.191 13 N -0.571 5.571 14 Si 0.803 3.197 15 H -0.191 1.191 16 H -0.199 1.199 17 H -0.191 1.191 18 C -0.096 4.096 19 C 0.030 3.970 20 H 0.067 0.933 21 C 0.010 3.990 22 O -0.397 6.397 23 O -0.301 6.301 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.066 0.934 33 H -0.002 1.002 34 H 0.002 0.998 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 13.541 9.902 8.556 18.832 hybrid contribution 0.107 -0.994 -0.074 1.003 sum 13.648 8.908 8.482 18.373 Atomic orbital electron populations 1.22210 0.96325 1.02179 1.02073 1.22424 0.93884 0.96704 0.83894 0.85514 1.22819 0.98824 0.88573 0.99694 1.61929 1.60808 1.02529 1.01942 1.22085 0.96297 0.94527 0.92739 1.22572 0.83587 0.97000 0.98689 1.87892 1.17616 1.33329 1.92595 1.19762 0.88933 0.84895 0.92871 1.21369 0.92810 0.93902 1.50078 0.92303 1.25925 1.04170 0.94726 0.94306 1.70066 1.34700 1.02118 1.50193 0.85225 0.77209 0.78294 0.78946 1.19140 1.19892 1.19102 1.22647 0.98407 0.98828 0.89756 1.22133 0.98731 0.82308 0.93812 0.93301 1.22131 0.97402 0.95748 0.83690 1.86494 1.70286 1.65664 1.17230 1.88024 1.75235 1.23166 1.43705 0.92516 0.91061 0.93576 0.92871 0.89084 0.90637 0.89872 0.94595 0.93382 1.00168 0.99827 0.92098 0.90154 0.92335 0.90455 0.91360 0.75124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.78 8.88 71.98 0.64 -4.14 16 2 C 0.09 2.17 3.92 30.63 0.12 2.29 16 3 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.03 0.69 5.01 86.31 0.43 1.12 16 5 N -0.55 -15.99 3.97 -895.21 -3.56 -19.55 16 6 C 0.07 2.00 5.38 86.30 0.46 2.46 16 7 C 0.06 2.17 6.13 71.98 0.44 2.61 16 8 O -0.39 -19.63 10.27 -148.98 -1.53 -21.16 16 9 C 0.21 12.09 5.69 71.24 0.41 12.49 16 10 C -0.54 -33.14 9.43 25.60 0.24 -32.90 16 11 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 12 C 0.01 0.41 5.46 84.65 0.46 0.87 16 13 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 14 Si 0.98 45.23 29.54 68.60 2.03 47.25 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 C 0.03 0.83 4.75 86.31 0.41 1.24 16 19 C 0.09 2.41 2.69 30.63 0.08 2.49 16 20 H 0.05 1.63 6.49 -2.39 -0.02 1.62 16 21 C 0.09 1.85 6.71 71.98 0.48 2.33 16 22 O -0.59 -13.28 13.63 -144.68 -1.97 -15.25 16 23 O -0.38 -10.67 10.25 -144.68 -1.48 -12.16 16 24 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.05 1.60 6.13 -2.39 -0.01 1.58 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 28 H 0.09 2.10 8.02 -2.39 -0.02 2.08 16 29 H 0.08 1.65 7.99 -2.39 -0.02 1.63 16 30 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16 31 H 0.04 1.30 6.75 -2.39 -0.02 1.29 16 32 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 33 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 34 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 35 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.08 2.18 6.74 -2.39 -0.02 2.17 16 37 H 0.06 1.27 8.13 -2.39 -0.02 1.26 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.40 4.58 9.12 -74.06 -0.68 3.90 16 Total: -1.00 -73.69 322.97 -1.71 -75.40 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.34 Total: 11.04 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 4.18 Total: -9.13 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -3.27 Total: -75.99 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -4.99 Total: -48.57 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.69 -1.71 -75.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339119371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.531 kcal (2) G-P(sol) polarization free energy of solvation -73.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds