Wall clock time and date at job start Mon Mar 30 2020 05:43:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09003 * 109.50508 * 2 1
4 4 C 1.53099 * 109.50622 * 239.87364 * 2 1 3
5 5 N 1.47016 * 109.25460 * 296.91289 * 4 2 1
6 6 C 1.46896 * 111.00019 * 177.61394 * 5 4 2
7 7 C 1.53000 * 109.46983 * 199.40469 * 6 5 4
8 8 O 1.42899 * 109.47380 * 65.06476 * 7 6 5
9 9 C 1.42897 * 113.99922 * 179.97438 * 8 7 6
10 10 C 1.50701 * 109.47231 * 179.97438 * 9 8 7
11 11 H 1.08003 * 120.00005 * 359.97438 * 10 9 8
12 12 C 1.37875 * 120.00153 * 180.02562 * 10 9 8
13 13 N 1.31511 * 119.99951 * 359.97438 * 12 10 9
14 14 Si 1.86798 * 119.99975 * 180.02562 * 12 10 9
15 15 H 1.48502 * 109.47362 * 89.99579 * 14 12 10
16 16 H 1.48502 * 109.47155 * 209.99890 * 14 12 10
17 17 H 1.48509 * 109.47241 * 329.99416 * 14 12 10
18 18 C 1.47019 * 110.75245 * 301.38569 * 5 4 2
19 19 C 1.53095 * 109.25827 * 58.61831 * 18 5 4
20 20 H 1.08994 * 109.51039 * 63.08311 * 19 18 5
21 21 C 1.53002 * 109.50680 * 183.22047 * 19 18 5
22 22 O 1.42902 * 109.47116 * 185.00181 * 21 19 18
23 23 O 1.43016 * 109.50734 * 120.08532 * 2 1 3
24 24 H 1.09006 * 109.47127 * 299.91348 * 1 2 3
25 25 H 1.09005 * 109.47009 * 59.91388 * 1 2 3
26 26 H 1.08995 * 109.47238 * 179.91241 * 1 2 3
27 27 H 1.09002 * 109.50316 * 176.97993 * 4 2 1
28 28 H 1.08999 * 109.50999 * 56.84383 * 4 2 1
29 29 H 1.08997 * 109.47891 * 79.39788 * 6 5 4
30 30 H 1.09004 * 109.46605 * 319.39691 * 6 5 4
31 31 H 1.08999 * 109.47202 * 305.05832 * 7 6 5
32 32 H 1.09004 * 109.46731 * 185.06524 * 7 6 5
33 33 H 1.09003 * 109.47592 * 59.99744 * 9 8 7
34 34 H 1.09001 * 109.47343 * 299.99919 * 9 8 7
35 35 H 0.97001 * 119.99834 * 180.02562 * 13 12 10
36 36 H 1.08998 * 109.50711 * 178.55402 * 18 5 4
37 37 H 1.09001 * 109.50461 * 298.63938 * 18 5 4
38 38 H 1.08999 * 109.46948 * 304.99378 * 21 19 18
39 39 H 1.09000 * 109.47267 * 64.99730 * 21 19 18
40 40 H 0.96700 * 113.99915 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8940 1.0275 0.0000
4 6 2.0413 -0.7243 -1.2482
5 7 1.6110 -2.1294 -1.2037
6 6 2.0336 -2.8479 -2.4132
7 6 1.1920 -4.1155 -2.5737
8 8 -0.1713 -3.7559 -2.8062
9 6 -1.0470 -4.8730 -2.9714
10 6 -2.4511 -4.3798 -3.2087
11 1 -2.6545 -3.3193 -3.2308
12 6 -3.4763 -5.2823 -3.3967
13 7 -3.2288 -6.5737 -3.3694
14 14 -5.2166 -4.6710 -3.6917
15 1 -5.4385 -4.4933 -5.1492
16 1 -6.1862 -5.6624 -3.1605
17 1 -5.4086 -3.3711 -2.9996
18 6 2.1185 -2.7916 0.0068
19 6 1.6065 -2.0465 1.2423
20 1 0.5188 -2.1059 1.2785
21 6 2.1961 -2.6821 2.5030
22 8 1.6284 -2.0626 3.6589
23 8 2.0076 -0.6758 1.1665
24 1 -0.3634 0.5125 0.8908
25 1 -0.3633 0.5152 -0.8893
26 1 -0.3633 -1.0276 -0.0016
27 1 3.1299 -0.6777 -1.2757
28 1 1.6331 -0.2468 -2.1390
29 1 3.0857 -3.1190 -2.3260
30 1 1.8945 -2.2069 -3.2838
31 1 1.2600 -4.7142 -1.6654
32 1 1.5643 -4.6943 -3.4190
33 1 -1.0256 -5.4878 -2.0715
34 1 -0.7211 -5.4671 -3.8251
35 1 -3.9500 -7.2086 -3.5021
36 1 1.7669 -3.8230 0.0321
37 1 3.2084 -2.7787 -0.0011
38 1 1.9680 -3.7479 2.5132
39 1 3.2770 -2.5417 2.5093
40 1 1.9576 -2.4165 4.4965
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000339119371.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:43:24
Heat of formation + Delta-G solvation = -164.926966 kcal
Electronic energy + Delta-G solvation = -20414.425117 eV
Core-core repulsion = 17228.339757 eV
Total energy + Delta-G solvation = -3186.085361 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.06543 -38.68686 -37.66415 -36.60732 -34.86507 -33.63555 -31.65520 -30.07021
-28.75876 -27.27314 -25.51571 -24.45923 -23.48876 -22.32158 -20.50984 -18.61755
-18.38467 -17.71221 -17.60091 -17.33230 -16.63721 -16.25972 -16.01427 -15.79566
-15.61318 -15.05599 -14.87757 -14.67903 -14.33003 -13.80934 -13.49789 -13.36351
-13.03655 -12.90728 -12.78464 -12.73429 -12.55129 -12.36518 -12.19128 -12.07364
-11.76129 -11.35959 -11.21974 -10.94557 -10.84657 -10.57075 -10.16470 -9.22668
-8.31393 -6.42886 1.39383 1.42154 1.54285 2.35217 2.64833 2.74549
3.02449 3.24243 3.33557 3.84947 3.92890 4.03490 4.10788 4.15007
4.25676 4.30972 4.37291 4.42478 4.46385 4.51457 4.58538 4.61957
4.72075 4.76823 4.83199 4.92719 4.95459 4.97203 5.08848 5.20474
5.41724 5.56249 5.97595 6.02179 6.04282 6.21753 6.58272 6.87992
6.91531 7.29447 8.81016
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.021022 B = 0.004733 C = 0.004593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1331.632573 B = 5914.834324 C = 6095.124607
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.088 3.912
3 H 0.127 0.873
4 C 0.029 3.971
5 N -0.547 5.547
6 C 0.071 3.929
7 C 0.059 3.941
8 O -0.395 6.395
9 C 0.211 3.789
10 C -0.544 4.544
11 H 0.059 0.941
12 C 0.007 3.993
13 N -0.931 5.931
14 Si 0.980 3.020
15 H -0.266 1.266
16 H -0.274 1.274
17 H -0.267 1.267
18 C 0.032 3.968
19 C 0.088 3.912
20 H 0.049 0.951
21 C 0.088 3.912
22 O -0.588 6.588
23 O -0.382 6.382
24 H 0.056 0.944
25 H 0.070 0.930
26 H 0.045 0.955
27 H 0.053 0.947
28 H 0.091 0.909
29 H 0.076 0.924
30 H 0.083 0.917
31 H 0.036 0.964
32 H 0.048 0.952
33 H -0.019 1.019
34 H -0.016 1.016
35 H 0.270 0.730
36 H 0.080 0.920
37 H 0.059 0.941
38 H 0.077 0.923
39 H 0.068 0.932
40 H 0.399 0.601
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.390 9.463 8.877 19.376
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.031 3.969
3 H 0.145 0.855
4 C -0.099 4.099
5 N -0.272 5.272
6 C -0.056 4.056
7 C -0.018 4.018
8 O -0.314 6.314
9 C 0.135 3.865
10 C -0.582 4.582
11 H 0.077 0.923
12 C -0.191 4.191
13 N -0.571 5.571
14 Si 0.803 3.197
15 H -0.191 1.191
16 H -0.199 1.199
17 H -0.191 1.191
18 C -0.096 4.096
19 C 0.030 3.970
20 H 0.067 0.933
21 C 0.010 3.990
22 O -0.397 6.397
23 O -0.301 6.301
24 H 0.075 0.925
25 H 0.089 0.911
26 H 0.064 0.936
27 H 0.071 0.929
28 H 0.109 0.891
29 H 0.094 0.906
30 H 0.101 0.899
31 H 0.054 0.946
32 H 0.066 0.934
33 H -0.002 1.002
34 H 0.002 0.998
35 H 0.079 0.921
36 H 0.098 0.902
37 H 0.077 0.923
38 H 0.095 0.905
39 H 0.086 0.914
40 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges 13.541 9.902 8.556 18.832
hybrid contribution 0.107 -0.994 -0.074 1.003
sum 13.648 8.908 8.482 18.373
Atomic orbital electron populations
1.22210 0.96325 1.02179 1.02073 1.22424 0.93884 0.96704 0.83894
0.85514 1.22819 0.98824 0.88573 0.99694 1.61929 1.60808 1.02529
1.01942 1.22085 0.96297 0.94527 0.92739 1.22572 0.83587 0.97000
0.98689 1.87892 1.17616 1.33329 1.92595 1.19762 0.88933 0.84895
0.92871 1.21369 0.92810 0.93902 1.50078 0.92303 1.25925 1.04170
0.94726 0.94306 1.70066 1.34700 1.02118 1.50193 0.85225 0.77209
0.78294 0.78946 1.19140 1.19892 1.19102 1.22647 0.98407 0.98828
0.89756 1.22133 0.98731 0.82308 0.93812 0.93301 1.22131 0.97402
0.95748 0.83690 1.86494 1.70286 1.65664 1.17230 1.88024 1.75235
1.23166 1.43705 0.92516 0.91061 0.93576 0.92871 0.89084 0.90637
0.89872 0.94595 0.93382 1.00168 0.99827 0.92098 0.90154 0.92335
0.90455 0.91360 0.75124
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.78 8.88 71.98 0.64 -4.14 16
2 C 0.09 2.17 3.92 30.63 0.12 2.29 16
3 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16
4 C 0.03 0.69 5.01 86.31 0.43 1.12 16
5 N -0.55 -15.99 3.97 -895.21 -3.56 -19.55 16
6 C 0.07 2.00 5.38 86.30 0.46 2.46 16
7 C 0.06 2.17 6.13 71.98 0.44 2.61 16
8 O -0.39 -19.63 10.27 -148.98 -1.53 -21.16 16
9 C 0.21 12.09 5.69 71.24 0.41 12.49 16
10 C -0.54 -33.14 9.43 25.60 0.24 -32.90 16
11 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16
12 C 0.01 0.41 5.46 84.65 0.46 0.87 16
13 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16
14 Si 0.98 45.23 29.54 68.60 2.03 47.25 16
15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16
17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
18 C 0.03 0.83 4.75 86.31 0.41 1.24 16
19 C 0.09 2.41 2.69 30.63 0.08 2.49 16
20 H 0.05 1.63 6.49 -2.39 -0.02 1.62 16
21 C 0.09 1.85 6.71 71.98 0.48 2.33 16
22 O -0.59 -13.28 13.63 -144.68 -1.97 -15.25 16
23 O -0.38 -10.67 10.25 -144.68 -1.48 -12.16 16
24 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16
25 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16
26 H 0.05 1.60 6.13 -2.39 -0.01 1.58 16
27 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16
28 H 0.09 2.10 8.02 -2.39 -0.02 2.08 16
29 H 0.08 1.65 7.99 -2.39 -0.02 1.63 16
30 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16
31 H 0.04 1.30 6.75 -2.39 -0.02 1.29 16
32 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16
33 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16
34 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16
35 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16
36 H 0.08 2.18 6.74 -2.39 -0.02 2.17 16
37 H 0.06 1.27 8.13 -2.39 -0.02 1.26 16
38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
40 H 0.40 4.58 9.12 -74.06 -0.68 3.90 16
Total: -1.00 -73.69 322.97 -1.71 -75.40
By element:
Atomic # 1 Polarization: 10.70 SS G_CDS: 0.34 Total: 11.04 kcal
Atomic # 6 Polarization: -13.31 SS G_CDS: 4.18 Total: -9.13 kcal
Atomic # 7 Polarization: -72.72 SS G_CDS: -3.27 Total: -75.99 kcal
Atomic # 8 Polarization: -43.58 SS G_CDS: -4.99 Total: -48.57 kcal
Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal
Total: -73.69 -1.71 -75.40 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000339119371.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -89.531 kcal
(2) G-P(sol) polarization free energy of solvation -73.687 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.396 kcal
(6) G-S(sol) free energy of system = (1) + (5) -164.927 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds