Wall clock time and date at job start Mon Mar 30 2020 05:43:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 109.50693 * 2 1
4 4 C 1.53101 * 109.50250 * 120.07708 * 2 1 3
5 5 N 1.47018 * 109.25262 * 176.82826 * 4 2 1
6 6 C 1.46899 * 110.99724 * 177.61190 * 5 4 2
7 7 C 1.53001 * 109.47361 * 176.14785 * 6 5 4
8 8 O 1.42901 * 109.47084 * 62.67060 * 7 6 5
9 9 C 1.42902 * 113.99923 * 180.02562 * 8 7 6
10 10 C 1.50695 * 109.47203 * 180.02562 * 9 8 7
11 11 H 1.07995 * 120.00182 * 0.02562 * 10 9 8
12 12 C 1.37875 * 119.99838 * 179.97438 * 10 9 8
13 13 N 1.31523 * 119.99919 * 180.02562 * 12 10 9
14 14 Si 1.86800 * 120.00186 * 359.97438 * 12 10 9
15 15 H 1.48499 * 109.47048 * 90.00027 * 14 12 10
16 16 H 1.48497 * 109.47090 * 209.99821 * 14 12 10
17 17 H 1.48494 * 109.47311 * 329.99853 * 14 12 10
18 18 C 1.47010 * 110.75238 * 301.38565 * 5 4 2
19 19 C 1.53092 * 109.25907 * 58.62014 * 18 5 4
20 20 H 1.09001 * 109.54594 * 63.10507 * 19 18 5
21 21 C 1.53002 * 109.50852 * 183.21421 * 19 18 5
22 22 O 1.42902 * 109.47382 * 184.78286 * 21 19 18
23 23 O 1.43010 * 109.25907 * 303.14587 * 19 18 5
24 24 H 1.09001 * 109.47484 * 299.92330 * 1 2 3
25 25 H 1.08996 * 109.47266 * 59.92226 * 1 2 3
26 26 H 1.09003 * 109.46952 * 179.91896 * 1 2 3
27 27 H 1.08999 * 109.50480 * 56.90249 * 4 2 1
28 28 H 1.08999 * 109.54820 * 296.78532 * 4 2 1
29 29 H 1.09003 * 109.47425 * 56.14250 * 6 5 4
30 30 H 1.09001 * 109.47147 * 296.14762 * 6 5 4
31 31 H 1.08997 * 109.47360 * 182.67652 * 7 6 5
32 32 H 1.09000 * 109.46752 * 302.67232 * 7 6 5
33 33 H 1.09004 * 109.46862 * 300.00133 * 9 8 7
34 34 H 1.09006 * 109.46968 * 59.99827 * 9 8 7
35 35 H 0.96994 * 119.99925 * 180.02562 * 13 12 10
36 36 H 1.09008 * 109.50255 * 178.55490 * 18 5 4
37 37 H 1.09002 * 109.51045 * 298.67588 * 18 5 4
38 38 H 1.09005 * 109.47096 * 304.78328 * 21 19 18
39 39 H 1.09006 * 109.47338 * 64.77724 * 21 19 18
40 40 H 0.96697 * 113.99631 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8940 1.0275 0.0000
4 6 2.0411 -0.7233 1.2489
5 7 3.5093 -0.7869 1.2054
6 6 4.0445 -1.4247 2.4156
7 6 5.5635 -1.5595 2.2919
8 8 6.1513 -0.2601 2.2017
9 6 7.5752 -0.2733 2.0815
10 6 8.0852 1.1421 1.9949
11 1 7.3914 1.9690 2.0287
12 6 9.4376 1.3813 1.8736
13 7 9.8827 2.6166 1.7985
14 14 10.6378 -0.0490 1.8173
15 1 10.8385 -0.4716 0.4079
16 1 11.9380 0.3728 2.3975
17 1 10.0911 -1.1852 2.6017
18 6 3.9648 -1.4868 -0.0044
19 6 3.4344 -0.7559 -1.2406
20 1 3.8536 0.2496 -1.2776
21 6 3.8377 -1.5242 -2.5007
22 8 3.4395 -0.7852 -3.6572
23 8 2.0084 -0.6762 -1.1658
24 1 -0.3634 0.5126 0.8907
25 1 -0.3633 0.5150 -0.8892
26 1 -0.3633 -1.0277 -0.0015
27 1 1.6337 -1.7339 1.2764
28 1 1.7265 -0.1795 2.1396
29 1 3.6003 -2.4132 2.5322
30 1 3.8037 -0.8134 3.2854
31 1 5.9552 -2.0754 3.1685
32 1 5.8057 -2.1309 1.3958
33 1 8.0089 -0.7627 2.9536
34 1 7.8588 -0.8179 1.1808
35 1 10.8341 2.7849 1.7128
36 1 5.0545 -1.4998 -0.0289
37 1 3.5882 -2.5097 0.0032
38 1 4.9189 -1.6618 -2.5119
39 1 3.3475 -2.4978 -2.5052
40 1 3.6637 -1.2140 -4.4944
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000339119372.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:43:28
Heat of formation + Delta-G solvation = -132.513688 kcal
Electronic energy + Delta-G solvation = -20337.801493 eV
Core-core repulsion = 17153.121678 eV
Total energy + Delta-G solvation = -3184.679815 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.88576 -37.32865 -36.67844 -35.35760 -33.07260 -32.61025 -30.37309 -29.00764
-27.44701 -26.20612 -24.30831 -21.97122 -21.84418 -21.07638 -20.29272 -17.44315
-16.87438 -16.67535 -16.42999 -15.74687 -15.44325 -15.02426 -14.69431 -14.43778
-14.31718 -14.00388 -13.52514 -13.02397 -12.71493 -12.62815 -12.52568 -12.29732
-12.22034 -11.86750 -11.46081 -11.32230 -11.03474 -10.91880 -10.76461 -10.55297
-10.33743 -10.09130 -9.85986 -9.48061 -9.16508 -8.83765 -8.45996 -8.22018
-6.10152 -4.08861 3.23657 3.30859 3.31803 3.62391 3.68190 4.21937
4.35553 4.58091 4.83146 4.93076 5.04964 5.12156 5.14567 5.20739
5.23622 5.30923 5.34347 5.43737 5.43885 5.50868 5.54168 5.69350
5.74981 5.82813 5.89982 5.98364 6.02396 6.12374 6.13565 6.58250
6.98476 7.03387 7.06874 7.27411 7.56369 7.60719 8.04018 8.68522
9.03254 9.49179 11.03032
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.021601 B = 0.004970 C = 0.004525
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1295.905642 B = 5632.369945 C = 6186.460099
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.088 3.912
3 H 0.069 0.931
4 C 0.024 3.976
5 N -0.521 5.521
6 C 0.063 3.937
7 C 0.056 3.944
8 O -0.363 6.363
9 C 0.167 3.833
10 C -0.516 4.516
11 H 0.083 0.917
12 C 0.072 3.928
13 N -0.895 5.895
14 Si 0.875 3.125
15 H -0.274 1.274
16 H -0.282 1.282
17 H -0.267 1.267
18 C 0.025 3.975
19 C 0.095 3.905
20 H 0.080 0.920
21 C 0.087 3.913
22 O -0.564 6.564
23 O -0.375 6.375
24 H 0.071 0.929
25 H 0.065 0.935
26 H 0.059 0.941
27 H 0.037 0.963
28 H 0.085 0.915
29 H 0.040 0.960
30 H 0.086 0.914
31 H 0.044 0.956
32 H 0.038 0.962
33 H 0.001 0.999
34 H -0.005 1.005
35 H 0.266 0.734
36 H 0.097 0.903
37 H 0.037 0.963
38 H 0.064 0.936
39 H 0.050 0.950
40 H 0.377 0.623
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.534 -11.859 -4.899 20.148
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.030 3.970
3 H 0.087 0.913
4 C -0.104 4.104
5 N -0.246 5.246
6 C -0.065 4.065
7 C -0.022 4.022
8 O -0.282 6.282
9 C 0.092 3.908
10 C -0.554 4.554
11 H 0.101 0.899
12 C -0.129 4.129
13 N -0.534 5.534
14 Si 0.702 3.298
15 H -0.200 1.200
16 H -0.208 1.208
17 H -0.192 1.192
18 C -0.103 4.103
19 C 0.037 3.963
20 H 0.098 0.902
21 C 0.008 3.992
22 O -0.369 6.369
23 O -0.294 6.294
24 H 0.090 0.910
25 H 0.084 0.916
26 H 0.078 0.922
27 H 0.055 0.945
28 H 0.104 0.896
29 H 0.058 0.942
30 H 0.105 0.895
31 H 0.062 0.938
32 H 0.056 0.944
33 H 0.018 0.982
34 H 0.013 0.987
35 H 0.076 0.924
36 H 0.115 0.885
37 H 0.055 0.945
38 H 0.082 0.918
39 H 0.068 0.932
40 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges -15.621 -10.749 -4.591 19.510
hybrid contribution 1.110 -2.132 -0.130 2.407
sum -14.511 -12.881 -4.721 19.970
Atomic orbital electron populations
1.21720 0.92971 1.02592 1.02598 1.22137 0.94500 0.96150 0.84217
0.91256 1.22842 0.88227 0.99764 0.99585 1.62052 1.07820 1.52982
1.01704 1.22160 0.94225 0.96973 0.93123 1.22427 0.92306 0.88372
0.99113 1.88043 1.22198 1.23714 1.94235 1.20599 0.77517 0.98725
0.93950 1.20885 0.92962 0.91095 1.50426 0.89869 1.24767 0.97758
0.95662 0.94763 1.69879 1.14582 1.18861 1.50076 0.86868 0.81042
0.83126 0.78794 1.19985 1.20788 1.19207 1.22728 1.02232 0.95173
0.90177 1.22092 0.81655 1.00263 0.92282 0.90245 1.22107 0.98308
0.93912 0.84838 1.86550 1.84345 1.50100 1.15866 1.87977 1.20473
1.78299 1.42657 0.90981 0.91590 0.92173 0.94458 0.89626 0.94172
0.89548 0.93837 0.94350 0.98175 0.98700 0.92398 0.88489 0.94497
0.91752 0.93159 0.77627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.40 9.57 37.16 0.36 -1.04 16
2 C 0.09 1.14 3.42 -26.68 -0.09 1.05 16
3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
4 C 0.02 0.31 4.95 -3.71 -0.02 0.29 16
5 N -0.52 -7.99 4.75 -234.30 -1.11 -9.10 16
6 C 0.06 0.91 5.52 -3.82 -0.02 0.89 16
7 C 0.06 0.96 5.58 37.16 0.21 1.17 16
8 O -0.36 -8.44 10.24 -35.23 -0.36 -8.81 16
9 C 0.17 4.25 4.76 36.00 0.17 4.42 16
10 C -0.52 -15.44 9.99 -34.44 -0.34 -15.79 16
11 H 0.08 2.75 8.06 -52.49 -0.42 2.32 16
12 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16
13 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16
14 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16
15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
17 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16
18 C 0.03 0.36 4.43 -3.72 -0.02 0.35 16
19 C 0.10 1.40 3.09 -26.68 -0.08 1.32 16
20 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
21 C 0.09 1.04 6.71 37.16 0.25 1.29 16
22 O -0.56 -7.10 13.63 -39.95 -0.54 -7.64 16
23 O -0.37 -5.59 10.08 -39.95 -0.40 -5.99 16
24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16
28 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16
29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16
31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.04 0.62 6.11 -51.93 -0.32 0.30 16
33 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16
34 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 16
35 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16
36 H 0.10 1.50 6.00 -51.92 -0.31 1.19 16
37 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16
38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.38 2.73 9.12 45.56 0.42 3.15 16
LS Contribution 322.57 15.07 4.86 4.86
Total: -1.00 -34.56 322.57 -7.21 -41.77
By element:
Atomic # 1 Polarization: 5.31 SS G_CDS: -6.07 Total: -0.76 kcal
Atomic # 6 Polarization: -4.33 SS G_CDS: 0.31 Total: -4.02 kcal
Atomic # 7 Polarization: -35.79 SS G_CDS: -0.34 Total: -36.13 kcal
Atomic # 8 Polarization: -21.14 SS G_CDS: -1.31 Total: -22.44 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -34.56 -7.21 -41.77 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000339119372.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.742 kcal
(2) G-P(sol) polarization free energy of solvation -34.565 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.306 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.514 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds