Wall clock time and date at job start Mon Mar 30 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.50693 * 2 1 4 4 C 1.53101 * 109.50250 * 120.07708 * 2 1 3 5 5 N 1.47018 * 109.25262 * 176.82826 * 4 2 1 6 6 C 1.46899 * 110.99724 * 177.61190 * 5 4 2 7 7 C 1.53001 * 109.47361 * 176.14785 * 6 5 4 8 8 O 1.42901 * 109.47084 * 62.67060 * 7 6 5 9 9 C 1.42902 * 113.99923 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47203 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00182 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99838 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99919 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00186 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47048 * 90.00027 * 14 12 10 16 16 H 1.48497 * 109.47090 * 209.99821 * 14 12 10 17 17 H 1.48494 * 109.47311 * 329.99853 * 14 12 10 18 18 C 1.47010 * 110.75238 * 301.38565 * 5 4 2 19 19 C 1.53092 * 109.25907 * 58.62014 * 18 5 4 20 20 H 1.09001 * 109.54594 * 63.10507 * 19 18 5 21 21 C 1.53002 * 109.50852 * 183.21421 * 19 18 5 22 22 O 1.42902 * 109.47382 * 184.78286 * 21 19 18 23 23 O 1.43010 * 109.25907 * 303.14587 * 19 18 5 24 24 H 1.09001 * 109.47484 * 299.92330 * 1 2 3 25 25 H 1.08996 * 109.47266 * 59.92226 * 1 2 3 26 26 H 1.09003 * 109.46952 * 179.91896 * 1 2 3 27 27 H 1.08999 * 109.50480 * 56.90249 * 4 2 1 28 28 H 1.08999 * 109.54820 * 296.78532 * 4 2 1 29 29 H 1.09003 * 109.47425 * 56.14250 * 6 5 4 30 30 H 1.09001 * 109.47147 * 296.14762 * 6 5 4 31 31 H 1.08997 * 109.47360 * 182.67652 * 7 6 5 32 32 H 1.09000 * 109.46752 * 302.67232 * 7 6 5 33 33 H 1.09004 * 109.46862 * 300.00133 * 9 8 7 34 34 H 1.09006 * 109.46968 * 59.99827 * 9 8 7 35 35 H 0.96994 * 119.99925 * 180.02562 * 13 12 10 36 36 H 1.09008 * 109.50255 * 178.55490 * 18 5 4 37 37 H 1.09002 * 109.51045 * 298.67588 * 18 5 4 38 38 H 1.09005 * 109.47096 * 304.78328 * 21 19 18 39 39 H 1.09006 * 109.47338 * 64.77724 * 21 19 18 40 40 H 0.96697 * 113.99631 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0411 -0.7233 1.2489 5 7 3.5093 -0.7869 1.2054 6 6 4.0445 -1.4247 2.4156 7 6 5.5635 -1.5595 2.2919 8 8 6.1513 -0.2601 2.2017 9 6 7.5752 -0.2733 2.0815 10 6 8.0852 1.1421 1.9949 11 1 7.3914 1.9690 2.0287 12 6 9.4376 1.3813 1.8736 13 7 9.8827 2.6166 1.7985 14 14 10.6378 -0.0490 1.8173 15 1 10.8385 -0.4716 0.4079 16 1 11.9380 0.3728 2.3975 17 1 10.0911 -1.1852 2.6017 18 6 3.9648 -1.4868 -0.0044 19 6 3.4344 -0.7559 -1.2406 20 1 3.8536 0.2496 -1.2776 21 6 3.8377 -1.5242 -2.5007 22 8 3.4395 -0.7852 -3.6572 23 8 2.0084 -0.6762 -1.1658 24 1 -0.3634 0.5126 0.8907 25 1 -0.3633 0.5150 -0.8892 26 1 -0.3633 -1.0277 -0.0015 27 1 1.6337 -1.7339 1.2764 28 1 1.7265 -0.1795 2.1396 29 1 3.6003 -2.4132 2.5322 30 1 3.8037 -0.8134 3.2854 31 1 5.9552 -2.0754 3.1685 32 1 5.8057 -2.1309 1.3958 33 1 8.0089 -0.7627 2.9536 34 1 7.8588 -0.8179 1.1808 35 1 10.8341 2.7849 1.7128 36 1 5.0545 -1.4998 -0.0289 37 1 3.5882 -2.5097 0.0032 38 1 4.9189 -1.6618 -2.5119 39 1 3.3475 -2.4978 -2.5052 40 1 3.6637 -1.2140 -4.4944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339119372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:28 Heat of formation + Delta-G solvation = -132.513688 kcal Electronic energy + Delta-G solvation = -20337.801493 eV Core-core repulsion = 17153.121678 eV Total energy + Delta-G solvation = -3184.679815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.88576 -37.32865 -36.67844 -35.35760 -33.07260 -32.61025 -30.37309 -29.00764 -27.44701 -26.20612 -24.30831 -21.97122 -21.84418 -21.07638 -20.29272 -17.44315 -16.87438 -16.67535 -16.42999 -15.74687 -15.44325 -15.02426 -14.69431 -14.43778 -14.31718 -14.00388 -13.52514 -13.02397 -12.71493 -12.62815 -12.52568 -12.29732 -12.22034 -11.86750 -11.46081 -11.32230 -11.03474 -10.91880 -10.76461 -10.55297 -10.33743 -10.09130 -9.85986 -9.48061 -9.16508 -8.83765 -8.45996 -8.22018 -6.10152 -4.08861 3.23657 3.30859 3.31803 3.62391 3.68190 4.21937 4.35553 4.58091 4.83146 4.93076 5.04964 5.12156 5.14567 5.20739 5.23622 5.30923 5.34347 5.43737 5.43885 5.50868 5.54168 5.69350 5.74981 5.82813 5.89982 5.98364 6.02396 6.12374 6.13565 6.58250 6.98476 7.03387 7.06874 7.27411 7.56369 7.60719 8.04018 8.68522 9.03254 9.49179 11.03032 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.004970 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.905642 B = 5632.369945 C = 6186.460099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.069 0.931 4 C 0.024 3.976 5 N -0.521 5.521 6 C 0.063 3.937 7 C 0.056 3.944 8 O -0.363 6.363 9 C 0.167 3.833 10 C -0.516 4.516 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.895 5.895 14 Si 0.875 3.125 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.025 3.975 19 C 0.095 3.905 20 H 0.080 0.920 21 C 0.087 3.913 22 O -0.564 6.564 23 O -0.375 6.375 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.001 0.999 34 H -0.005 1.005 35 H 0.266 0.734 36 H 0.097 0.903 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.534 -11.859 -4.899 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.087 0.913 4 C -0.104 4.104 5 N -0.246 5.246 6 C -0.065 4.065 7 C -0.022 4.022 8 O -0.282 6.282 9 C 0.092 3.908 10 C -0.554 4.554 11 H 0.101 0.899 12 C -0.129 4.129 13 N -0.534 5.534 14 Si 0.702 3.298 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.103 4.103 19 C 0.037 3.963 20 H 0.098 0.902 21 C 0.008 3.992 22 O -0.369 6.369 23 O -0.294 6.294 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.018 0.982 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -15.621 -10.749 -4.591 19.510 hybrid contribution 1.110 -2.132 -0.130 2.407 sum -14.511 -12.881 -4.721 19.970 Atomic orbital electron populations 1.21720 0.92971 1.02592 1.02598 1.22137 0.94500 0.96150 0.84217 0.91256 1.22842 0.88227 0.99764 0.99585 1.62052 1.07820 1.52982 1.01704 1.22160 0.94225 0.96973 0.93123 1.22427 0.92306 0.88372 0.99113 1.88043 1.22198 1.23714 1.94235 1.20599 0.77517 0.98725 0.93950 1.20885 0.92962 0.91095 1.50426 0.89869 1.24767 0.97758 0.95662 0.94763 1.69879 1.14582 1.18861 1.50076 0.86868 0.81042 0.83126 0.78794 1.19985 1.20788 1.19207 1.22728 1.02232 0.95173 0.90177 1.22092 0.81655 1.00263 0.92282 0.90245 1.22107 0.98308 0.93912 0.84838 1.86550 1.84345 1.50100 1.15866 1.87977 1.20473 1.78299 1.42657 0.90981 0.91590 0.92173 0.94458 0.89626 0.94172 0.89548 0.93837 0.94350 0.98175 0.98700 0.92398 0.88489 0.94497 0.91752 0.93159 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.57 37.16 0.36 -1.04 16 2 C 0.09 1.14 3.42 -26.68 -0.09 1.05 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.02 0.31 4.95 -3.71 -0.02 0.29 16 5 N -0.52 -7.99 4.75 -234.30 -1.11 -9.10 16 6 C 0.06 0.91 5.52 -3.82 -0.02 0.89 16 7 C 0.06 0.96 5.58 37.16 0.21 1.17 16 8 O -0.36 -8.44 10.24 -35.23 -0.36 -8.81 16 9 C 0.17 4.25 4.76 36.00 0.17 4.42 16 10 C -0.52 -15.44 9.99 -34.44 -0.34 -15.79 16 11 H 0.08 2.75 8.06 -52.49 -0.42 2.32 16 12 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 13 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 14 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 18 C 0.03 0.36 4.43 -3.72 -0.02 0.35 16 19 C 0.10 1.40 3.09 -26.68 -0.08 1.32 16 20 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 21 C 0.09 1.04 6.71 37.16 0.25 1.29 16 22 O -0.56 -7.10 13.63 -39.95 -0.54 -7.64 16 23 O -0.37 -5.59 10.08 -39.95 -0.40 -5.99 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.62 6.11 -51.93 -0.32 0.30 16 33 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 34 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 16 35 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.10 1.50 6.00 -51.92 -0.31 1.19 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.38 2.73 9.12 45.56 0.42 3.15 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -34.56 322.57 -7.21 -41.77 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.07 Total: -0.76 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 0.31 Total: -4.02 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.34 Total: -36.13 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -1.31 Total: -22.44 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.56 -7.21 -41.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339119372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.742 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds