Wall clock time and date at job start Mon Mar 30 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.50693 * 2 1 4 4 C 1.53101 * 109.50250 * 120.07708 * 2 1 3 5 5 N 1.47018 * 109.25262 * 176.82826 * 4 2 1 6 6 C 1.46899 * 110.99724 * 177.61190 * 5 4 2 7 7 C 1.53001 * 109.47361 * 176.14785 * 6 5 4 8 8 O 1.42901 * 109.47084 * 62.67060 * 7 6 5 9 9 C 1.42902 * 113.99923 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47203 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00182 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99838 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99919 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00186 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47048 * 90.00027 * 14 12 10 16 16 H 1.48497 * 109.47090 * 209.99821 * 14 12 10 17 17 H 1.48494 * 109.47311 * 329.99853 * 14 12 10 18 18 C 1.47010 * 110.75238 * 301.38565 * 5 4 2 19 19 C 1.53092 * 109.25907 * 58.62014 * 18 5 4 20 20 H 1.09001 * 109.54594 * 63.10507 * 19 18 5 21 21 C 1.53002 * 109.50852 * 183.21421 * 19 18 5 22 22 O 1.42902 * 109.47382 * 184.78286 * 21 19 18 23 23 O 1.43010 * 109.25907 * 303.14587 * 19 18 5 24 24 H 1.09001 * 109.47484 * 299.92330 * 1 2 3 25 25 H 1.08996 * 109.47266 * 59.92226 * 1 2 3 26 26 H 1.09003 * 109.46952 * 179.91896 * 1 2 3 27 27 H 1.08999 * 109.50480 * 56.90249 * 4 2 1 28 28 H 1.08999 * 109.54820 * 296.78532 * 4 2 1 29 29 H 1.09003 * 109.47425 * 56.14250 * 6 5 4 30 30 H 1.09001 * 109.47147 * 296.14762 * 6 5 4 31 31 H 1.08997 * 109.47360 * 182.67652 * 7 6 5 32 32 H 1.09000 * 109.46752 * 302.67232 * 7 6 5 33 33 H 1.09004 * 109.46862 * 300.00133 * 9 8 7 34 34 H 1.09006 * 109.46968 * 59.99827 * 9 8 7 35 35 H 0.96994 * 119.99925 * 180.02562 * 13 12 10 36 36 H 1.09008 * 109.50255 * 178.55490 * 18 5 4 37 37 H 1.09002 * 109.51045 * 298.67588 * 18 5 4 38 38 H 1.09005 * 109.47096 * 304.78328 * 21 19 18 39 39 H 1.09006 * 109.47338 * 64.77724 * 21 19 18 40 40 H 0.96697 * 113.99631 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0411 -0.7233 1.2489 5 7 3.5093 -0.7869 1.2054 6 6 4.0445 -1.4247 2.4156 7 6 5.5635 -1.5595 2.2919 8 8 6.1513 -0.2601 2.2017 9 6 7.5752 -0.2733 2.0815 10 6 8.0852 1.1421 1.9949 11 1 7.3914 1.9690 2.0287 12 6 9.4376 1.3813 1.8736 13 7 9.8827 2.6166 1.7985 14 14 10.6378 -0.0490 1.8173 15 1 10.8385 -0.4716 0.4079 16 1 11.9380 0.3728 2.3975 17 1 10.0911 -1.1852 2.6017 18 6 3.9648 -1.4868 -0.0044 19 6 3.4344 -0.7559 -1.2406 20 1 3.8536 0.2496 -1.2776 21 6 3.8377 -1.5242 -2.5007 22 8 3.4395 -0.7852 -3.6572 23 8 2.0084 -0.6762 -1.1658 24 1 -0.3634 0.5126 0.8907 25 1 -0.3633 0.5150 -0.8892 26 1 -0.3633 -1.0277 -0.0015 27 1 1.6337 -1.7339 1.2764 28 1 1.7265 -0.1795 2.1396 29 1 3.6003 -2.4132 2.5322 30 1 3.8037 -0.8134 3.2854 31 1 5.9552 -2.0754 3.1685 32 1 5.8057 -2.1309 1.3958 33 1 8.0089 -0.7627 2.9536 34 1 7.8588 -0.8179 1.1808 35 1 10.8341 2.7849 1.7128 36 1 5.0545 -1.4998 -0.0289 37 1 3.5882 -2.5097 0.0032 38 1 4.9189 -1.6618 -2.5119 39 1 3.3475 -2.4978 -2.5052 40 1 3.6637 -1.2140 -4.4944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339119372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:27 Heat of formation + Delta-G solvation = -161.998327 kcal Electronic energy + Delta-G solvation = -20339.080043 eV Core-core repulsion = 17153.121678 eV Total energy + Delta-G solvation = -3185.958365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97794 -38.82585 -37.70280 -36.65330 -34.82437 -34.05534 -31.66987 -30.37640 -29.16722 -27.21590 -25.45282 -23.95458 -22.99830 -22.24060 -21.40368 -19.04437 -18.39301 -17.76732 -17.64952 -17.39016 -16.65276 -16.33369 -16.03433 -15.97745 -15.62427 -15.03291 -14.87018 -14.59114 -14.31703 -13.84712 -13.61224 -13.53881 -13.18206 -13.08936 -12.80373 -12.77042 -12.56302 -12.39583 -12.05873 -11.87975 -11.76672 -11.51194 -11.28748 -11.00927 -10.91655 -10.59982 -10.30352 -9.29080 -8.36503 -6.44455 1.32537 1.36288 1.47038 2.29562 2.58554 2.66806 2.96008 3.11481 3.28189 3.82172 3.87384 4.00692 4.06982 4.11506 4.20941 4.26418 4.32250 4.39710 4.42219 4.49324 4.52582 4.59182 4.61148 4.70679 4.72482 4.86174 4.91631 4.97133 5.02356 5.08719 5.25223 5.44886 5.89934 5.97563 6.04284 6.20260 6.60345 6.79686 6.89420 7.20283 8.81074 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.004970 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.905642 B = 5632.369945 C = 6186.460099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.080 3.920 3 H 0.044 0.956 4 C 0.029 3.971 5 N -0.555 5.555 6 C 0.068 3.932 7 C 0.046 3.954 8 O -0.393 6.393 9 C 0.180 3.820 10 C -0.544 4.544 11 H 0.026 0.974 12 C 0.012 3.988 13 N -0.944 5.944 14 Si 0.957 3.043 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.244 1.244 18 C 0.032 3.968 19 C 0.091 3.909 20 H 0.040 0.960 21 C 0.090 3.910 22 O -0.588 6.588 23 O -0.384 6.384 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.011 0.989 34 H 0.009 0.991 35 H 0.273 0.727 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.749 -15.197 -4.795 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.022 3.978 3 H 0.062 0.938 4 C -0.098 4.098 5 N -0.280 5.280 6 C -0.059 4.059 7 C -0.031 4.031 8 O -0.312 6.312 9 C 0.104 3.896 10 C -0.581 4.581 11 H 0.044 0.956 12 C -0.186 4.186 13 N -0.584 5.584 14 Si 0.778 3.222 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.167 1.167 18 C -0.096 4.096 19 C 0.033 3.967 20 H 0.058 0.942 21 C 0.012 3.988 22 O -0.397 6.397 23 O -0.304 6.304 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.027 0.973 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -15.869 -14.102 -4.497 21.700 hybrid contribution 1.071 -0.975 -0.177 1.459 sum -14.798 -15.077 -4.674 21.637 Atomic orbital electron populations 1.21702 0.90398 1.03470 1.03482 1.22323 0.96474 0.94833 0.84167 0.93756 1.22841 0.86732 1.00670 0.99573 1.62008 1.09564 1.54167 1.02276 1.22140 0.92416 0.98721 0.92642 1.22799 0.93775 0.85952 1.00570 1.87995 1.20947 1.27800 1.94493 1.20288 0.79029 0.95581 0.94732 1.21163 0.92995 0.92295 1.51685 0.95605 1.25873 0.99897 0.99342 0.93483 1.70048 1.15573 1.21938 1.50838 0.85584 0.77661 0.78987 0.79938 1.18338 1.19906 1.16718 1.22617 1.01268 0.96045 0.89645 1.22121 0.81639 0.98769 0.94191 0.94208 1.22115 0.99143 0.93996 0.83582 1.86491 1.84684 1.51283 1.17238 1.87969 1.20427 1.78317 1.43657 0.88993 0.91873 0.91191 0.92796 0.88647 0.90611 0.90013 0.92056 0.92927 0.97087 0.97346 0.91847 0.89978 0.92291 0.90613 0.91073 0.75072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.57 71.98 0.69 -1.74 16 2 C 0.08 2.05 3.42 30.63 0.10 2.16 16 3 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 4 C 0.03 0.70 4.95 86.31 0.43 1.13 16 5 N -0.55 -16.51 4.75 -895.20 -4.25 -20.76 16 6 C 0.07 1.83 5.52 86.30 0.48 2.30 16 7 C 0.05 1.49 5.58 71.98 0.40 1.90 16 8 O -0.39 -18.32 10.24 -148.98 -1.53 -19.85 16 9 C 0.18 9.03 4.76 71.23 0.34 9.36 16 10 C -0.54 -33.67 9.99 25.60 0.26 -33.42 16 11 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 12 C 0.01 0.70 5.47 84.65 0.46 1.16 16 13 N -0.94 -60.30 13.96 21.45 0.30 -60.00 16 14 Si 0.96 43.37 27.47 68.60 1.88 45.25 16 15 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 18 C 0.03 0.90 4.43 86.31 0.38 1.28 16 19 C 0.09 2.69 3.09 30.63 0.09 2.79 16 20 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 21 C 0.09 2.06 6.71 71.98 0.48 2.55 16 22 O -0.59 -14.44 13.63 -144.46 -1.97 -16.40 16 23 O -0.38 -11.32 10.08 -144.46 -1.46 -12.78 16 24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.57 6.11 -2.39 -0.01 1.55 16 33 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 34 H 0.01 0.42 7.57 -2.38 -0.02 0.40 16 35 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 36 H 0.08 2.48 6.00 -2.38 -0.01 2.47 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.40 5.29 9.12 -74.06 -0.68 4.61 16 Total: -1.00 -77.86 322.57 -2.62 -80.48 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.28 Total: 14.59 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 4.12 Total: -10.54 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.95 Total: -80.75 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -4.95 Total: -49.03 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Total: -77.86 -2.62 -80.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339119372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.522 kcal (2) G-P(sol) polarization free energy of solvation -77.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds