Wall clock time and date at job start Mon Mar 30 2020 05:43:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 109.50693 * 2 1
4 4 C 1.53101 * 109.50250 * 120.07708 * 2 1 3
5 5 N 1.47018 * 109.25262 * 176.82826 * 4 2 1
6 6 C 1.46899 * 110.99724 * 177.61190 * 5 4 2
7 7 C 1.53001 * 109.47361 * 176.14785 * 6 5 4
8 8 O 1.42901 * 109.47084 * 62.67060 * 7 6 5
9 9 C 1.42902 * 113.99923 * 180.02562 * 8 7 6
10 10 C 1.50695 * 109.47203 * 180.02562 * 9 8 7
11 11 H 1.07995 * 120.00182 * 0.02562 * 10 9 8
12 12 C 1.37875 * 119.99838 * 179.97438 * 10 9 8
13 13 N 1.31523 * 119.99919 * 180.02562 * 12 10 9
14 14 Si 1.86800 * 120.00186 * 359.97438 * 12 10 9
15 15 H 1.48499 * 109.47048 * 90.00027 * 14 12 10
16 16 H 1.48497 * 109.47090 * 209.99821 * 14 12 10
17 17 H 1.48494 * 109.47311 * 329.99853 * 14 12 10
18 18 C 1.47010 * 110.75238 * 301.38565 * 5 4 2
19 19 C 1.53092 * 109.25907 * 58.62014 * 18 5 4
20 20 H 1.09001 * 109.54594 * 63.10507 * 19 18 5
21 21 C 1.53002 * 109.50852 * 183.21421 * 19 18 5
22 22 O 1.42902 * 109.47382 * 184.78286 * 21 19 18
23 23 O 1.43010 * 109.25907 * 303.14587 * 19 18 5
24 24 H 1.09001 * 109.47484 * 299.92330 * 1 2 3
25 25 H 1.08996 * 109.47266 * 59.92226 * 1 2 3
26 26 H 1.09003 * 109.46952 * 179.91896 * 1 2 3
27 27 H 1.08999 * 109.50480 * 56.90249 * 4 2 1
28 28 H 1.08999 * 109.54820 * 296.78532 * 4 2 1
29 29 H 1.09003 * 109.47425 * 56.14250 * 6 5 4
30 30 H 1.09001 * 109.47147 * 296.14762 * 6 5 4
31 31 H 1.08997 * 109.47360 * 182.67652 * 7 6 5
32 32 H 1.09000 * 109.46752 * 302.67232 * 7 6 5
33 33 H 1.09004 * 109.46862 * 300.00133 * 9 8 7
34 34 H 1.09006 * 109.46968 * 59.99827 * 9 8 7
35 35 H 0.96994 * 119.99925 * 180.02562 * 13 12 10
36 36 H 1.09008 * 109.50255 * 178.55490 * 18 5 4
37 37 H 1.09002 * 109.51045 * 298.67588 * 18 5 4
38 38 H 1.09005 * 109.47096 * 304.78328 * 21 19 18
39 39 H 1.09006 * 109.47338 * 64.77724 * 21 19 18
40 40 H 0.96697 * 113.99631 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8940 1.0275 0.0000
4 6 2.0411 -0.7233 1.2489
5 7 3.5093 -0.7869 1.2054
6 6 4.0445 -1.4247 2.4156
7 6 5.5635 -1.5595 2.2919
8 8 6.1513 -0.2601 2.2017
9 6 7.5752 -0.2733 2.0815
10 6 8.0852 1.1421 1.9949
11 1 7.3914 1.9690 2.0287
12 6 9.4376 1.3813 1.8736
13 7 9.8827 2.6166 1.7985
14 14 10.6378 -0.0490 1.8173
15 1 10.8385 -0.4716 0.4079
16 1 11.9380 0.3728 2.3975
17 1 10.0911 -1.1852 2.6017
18 6 3.9648 -1.4868 -0.0044
19 6 3.4344 -0.7559 -1.2406
20 1 3.8536 0.2496 -1.2776
21 6 3.8377 -1.5242 -2.5007
22 8 3.4395 -0.7852 -3.6572
23 8 2.0084 -0.6762 -1.1658
24 1 -0.3634 0.5126 0.8907
25 1 -0.3633 0.5150 -0.8892
26 1 -0.3633 -1.0277 -0.0015
27 1 1.6337 -1.7339 1.2764
28 1 1.7265 -0.1795 2.1396
29 1 3.6003 -2.4132 2.5322
30 1 3.8037 -0.8134 3.2854
31 1 5.9552 -2.0754 3.1685
32 1 5.8057 -2.1309 1.3958
33 1 8.0089 -0.7627 2.9536
34 1 7.8588 -0.8179 1.1808
35 1 10.8341 2.7849 1.7128
36 1 5.0545 -1.4998 -0.0289
37 1 3.5882 -2.5097 0.0032
38 1 4.9189 -1.6618 -2.5119
39 1 3.3475 -2.4978 -2.5052
40 1 3.6637 -1.2140 -4.4944
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000339119372.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:43:27
Heat of formation + Delta-G solvation = -161.998327 kcal
Electronic energy + Delta-G solvation = -20339.080043 eV
Core-core repulsion = 17153.121678 eV
Total energy + Delta-G solvation = -3185.958365 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.97794 -38.82585 -37.70280 -36.65330 -34.82437 -34.05534 -31.66987 -30.37640
-29.16722 -27.21590 -25.45282 -23.95458 -22.99830 -22.24060 -21.40368 -19.04437
-18.39301 -17.76732 -17.64952 -17.39016 -16.65276 -16.33369 -16.03433 -15.97745
-15.62427 -15.03291 -14.87018 -14.59114 -14.31703 -13.84712 -13.61224 -13.53881
-13.18206 -13.08936 -12.80373 -12.77042 -12.56302 -12.39583 -12.05873 -11.87975
-11.76672 -11.51194 -11.28748 -11.00927 -10.91655 -10.59982 -10.30352 -9.29080
-8.36503 -6.44455 1.32537 1.36288 1.47038 2.29562 2.58554 2.66806
2.96008 3.11481 3.28189 3.82172 3.87384 4.00692 4.06982 4.11506
4.20941 4.26418 4.32250 4.39710 4.42219 4.49324 4.52582 4.59182
4.61148 4.70679 4.72482 4.86174 4.91631 4.97133 5.02356 5.08719
5.25223 5.44886 5.89934 5.97563 6.04284 6.20260 6.60345 6.79686
6.89420 7.20283 8.81074
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.021601 B = 0.004970 C = 0.004525
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1295.905642 B = 5632.369945 C = 6186.460099
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.080 3.920
3 H 0.044 0.956
4 C 0.029 3.971
5 N -0.555 5.555
6 C 0.068 3.932
7 C 0.046 3.954
8 O -0.393 6.393
9 C 0.180 3.820
10 C -0.544 4.544
11 H 0.026 0.974
12 C 0.012 3.988
13 N -0.944 5.944
14 Si 0.957 3.043
15 H -0.259 1.259
16 H -0.274 1.274
17 H -0.244 1.244
18 C 0.032 3.968
19 C 0.091 3.909
20 H 0.040 0.960
21 C 0.090 3.910
22 O -0.588 6.588
23 O -0.384 6.384
24 H 0.091 0.909
25 H 0.062 0.938
26 H 0.069 0.931
27 H 0.054 0.946
28 H 0.095 0.905
29 H 0.076 0.924
30 H 0.081 0.919
31 H 0.061 0.939
32 H 0.053 0.947
33 H 0.011 0.989
34 H 0.009 0.991
35 H 0.273 0.727
36 H 0.082 0.918
37 H 0.059 0.941
38 H 0.076 0.924
39 H 0.071 0.929
40 H 0.399 0.601
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.749 -15.197 -4.795 22.405
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.022 3.978
3 H 0.062 0.938
4 C -0.098 4.098
5 N -0.280 5.280
6 C -0.059 4.059
7 C -0.031 4.031
8 O -0.312 6.312
9 C 0.104 3.896
10 C -0.581 4.581
11 H 0.044 0.956
12 C -0.186 4.186
13 N -0.584 5.584
14 Si 0.778 3.222
15 H -0.183 1.183
16 H -0.199 1.199
17 H -0.167 1.167
18 C -0.096 4.096
19 C 0.033 3.967
20 H 0.058 0.942
21 C 0.012 3.988
22 O -0.397 6.397
23 O -0.304 6.304
24 H 0.110 0.890
25 H 0.081 0.919
26 H 0.088 0.912
27 H 0.072 0.928
28 H 0.114 0.886
29 H 0.094 0.906
30 H 0.100 0.900
31 H 0.079 0.921
32 H 0.071 0.929
33 H 0.029 0.971
34 H 0.027 0.973
35 H 0.082 0.918
36 H 0.100 0.900
37 H 0.077 0.923
38 H 0.094 0.906
39 H 0.089 0.911
40 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges -15.869 -14.102 -4.497 21.700
hybrid contribution 1.071 -0.975 -0.177 1.459
sum -14.798 -15.077 -4.674 21.637
Atomic orbital electron populations
1.21702 0.90398 1.03470 1.03482 1.22323 0.96474 0.94833 0.84167
0.93756 1.22841 0.86732 1.00670 0.99573 1.62008 1.09564 1.54167
1.02276 1.22140 0.92416 0.98721 0.92642 1.22799 0.93775 0.85952
1.00570 1.87995 1.20947 1.27800 1.94493 1.20288 0.79029 0.95581
0.94732 1.21163 0.92995 0.92295 1.51685 0.95605 1.25873 0.99897
0.99342 0.93483 1.70048 1.15573 1.21938 1.50838 0.85584 0.77661
0.78987 0.79938 1.18338 1.19906 1.16718 1.22617 1.01268 0.96045
0.89645 1.22121 0.81639 0.98769 0.94191 0.94208 1.22115 0.99143
0.93996 0.83582 1.86491 1.84684 1.51283 1.17238 1.87969 1.20427
1.78317 1.43657 0.88993 0.91873 0.91191 0.92796 0.88647 0.90611
0.90013 0.92056 0.92927 0.97087 0.97346 0.91847 0.89978 0.92291
0.90613 0.91073 0.75072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.43 9.57 71.98 0.69 -1.74 16
2 C 0.08 2.05 3.42 30.63 0.10 2.16 16
3 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16
4 C 0.03 0.70 4.95 86.31 0.43 1.13 16
5 N -0.55 -16.51 4.75 -895.20 -4.25 -20.76 16
6 C 0.07 1.83 5.52 86.30 0.48 2.30 16
7 C 0.05 1.49 5.58 71.98 0.40 1.90 16
8 O -0.39 -18.32 10.24 -148.98 -1.53 -19.85 16
9 C 0.18 9.03 4.76 71.23 0.34 9.36 16
10 C -0.54 -33.67 9.99 25.60 0.26 -33.42 16
11 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16
12 C 0.01 0.70 5.47 84.65 0.46 1.16 16
13 N -0.94 -60.30 13.96 21.45 0.30 -60.00 16
14 Si 0.96 43.37 27.47 68.60 1.88 45.25 16
15 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16
16 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16
17 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16
18 C 0.03 0.90 4.43 86.31 0.38 1.28 16
19 C 0.09 2.69 3.09 30.63 0.09 2.79 16
20 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
21 C 0.09 2.06 6.71 71.98 0.48 2.55 16
22 O -0.59 -14.44 13.63 -144.46 -1.97 -16.40 16
23 O -0.38 -11.32 10.08 -144.46 -1.46 -12.78 16
24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16
25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16
28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16
29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
31 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16
32 H 0.05 1.57 6.11 -2.39 -0.01 1.55 16
33 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16
34 H 0.01 0.42 7.57 -2.38 -0.02 0.40 16
35 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16
36 H 0.08 2.48 6.00 -2.38 -0.01 2.47 16
37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
38 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16
39 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16
40 H 0.40 5.29 9.12 -74.06 -0.68 4.61 16
Total: -1.00 -77.86 322.57 -2.62 -80.48
By element:
Atomic # 1 Polarization: 14.31 SS G_CDS: 0.28 Total: 14.59 kcal
Atomic # 6 Polarization: -14.65 SS G_CDS: 4.12 Total: -10.54 kcal
Atomic # 7 Polarization: -76.80 SS G_CDS: -3.95 Total: -80.75 kcal
Atomic # 8 Polarization: -44.08 SS G_CDS: -4.95 Total: -49.03 kcal
Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal
Total: -77.86 -2.62 -80.48 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000339119372.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -81.522 kcal
(2) G-P(sol) polarization free energy of solvation -77.857 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.477 kcal
(6) G-S(sol) free energy of system = (1) + (5) -161.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds