Wall clock time and date at job start Mon Mar 30 2020 04:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 108.78615 * 2 1 4 4 C 1.46574 * 108.89296 * 118.55631 * 2 1 3 5 5 C 1.54353 * 111.47424 * 181.56397 * 4 2 1 6 6 O 1.40309 * 108.92449 * 283.02148 * 5 4 2 7 7 C 1.44245 * 117.15698 * 93.11115 * 6 5 4 8 8 C 1.53839 * 112.83677 * 317.92234 * 7 6 5 9 9 N 1.44353 * 112.12060 * 318.50293 * 8 7 6 10 10 C 1.46900 * 110.99855 * 215.88675 * 9 8 7 11 11 C 1.53003 * 109.46754 * 302.04332 * 10 9 8 12 12 C 1.53007 * 109.47069 * 185.30642 * 11 10 9 13 13 S 1.80998 * 109.47285 * 179.97438 * 12 11 10 14 14 C 1.76199 * 100.00096 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99788 * 0.02562 * 14 13 12 16 16 C 1.38792 * 119.99944 * 180.02562 * 14 13 12 17 17 N 1.31629 * 120.00436 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99991 * 180.27548 * 16 14 13 19 19 H 1.48496 * 109.47593 * 179.72069 * 18 16 14 20 20 H 1.48504 * 109.47217 * 299.72374 * 18 16 14 21 21 H 1.48505 * 109.47341 * 59.72047 * 18 16 14 22 22 H 1.09010 * 109.46901 * 178.54507 * 1 2 3 23 23 H 1.08994 * 109.47281 * 298.54644 * 1 2 3 24 24 H 1.08998 * 109.47299 * 58.55239 * 1 2 3 25 25 H 1.09001 * 109.08098 * 302.07816 * 4 2 1 26 26 H 1.09002 * 109.08156 * 61.04799 * 4 2 1 27 27 H 1.09003 * 109.56815 * 42.85472 * 5 4 2 28 28 H 1.09009 * 109.56236 * 163.18971 * 5 4 2 29 29 H 1.09006 * 108.80572 * 78.78577 * 7 6 5 30 30 H 1.09006 * 108.81022 * 197.16508 * 7 6 5 31 31 H 1.08994 * 108.95055 * 197.82183 * 8 7 6 32 32 H 1.08997 * 108.95191 * 79.18078 * 8 7 6 33 33 H 1.08998 * 109.47135 * 182.04443 * 10 9 8 34 34 H 1.08998 * 109.47290 * 62.04242 * 10 9 8 35 35 H 1.08991 * 109.47206 * 65.30559 * 11 10 9 36 36 H 1.08995 * 109.47177 * 305.30119 * 11 10 9 37 37 H 1.08998 * 109.47073 * 59.99513 * 12 11 10 38 38 H 1.09004 * 109.47028 * 300.00226 * 12 11 10 39 39 H 0.96993 * 120.00522 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8810 1.0320 0.0000 4 6 2.0046 -0.6629 1.2181 5 6 3.5461 -0.6618 1.2980 6 8 4.0473 -1.6460 0.4327 7 6 4.3962 -1.2315 -0.9042 8 6 3.3651 -0.2695 -1.5192 9 7 2.0086 -0.6682 -1.2284 10 6 1.1210 -0.3820 -2.3634 11 6 1.1777 1.1114 -2.6911 12 6 0.1565 1.4328 -3.7842 13 16 0.2229 3.1996 -4.1714 14 6 -1.0162 3.2859 -5.4211 15 1 -1.5472 2.3933 -5.7176 16 6 -1.3100 4.5008 -6.0244 17 7 -0.6633 5.5887 -5.6627 18 14 -2.6291 4.5936 -7.3438 19 1 -2.7548 5.9944 -7.8205 20 1 -2.2543 3.7154 -8.4812 21 1 -3.9270 4.1448 -6.7787 22 1 -0.3633 -1.0274 -0.0261 23 1 -0.3633 0.4911 0.9027 24 1 -0.3634 0.5361 -0.8767 25 1 1.6024 -0.1421 2.0870 26 1 1.6482 -1.6930 1.2251 27 1 3.9264 0.3150 0.9991 28 1 3.8587 -0.8801 2.3192 29 1 5.3666 -0.7357 -0.8764 30 1 4.4716 -2.1153 -1.5378 31 1 3.5033 -0.2463 -2.6001 32 1 3.5330 0.7311 -1.1209 33 1 0.0990 -0.6586 -2.1042 34 1 1.4440 -0.9570 -3.2312 35 1 2.1773 1.3690 -3.0408 36 1 0.9457 1.6888 -1.7962 37 1 -0.8433 1.1752 -3.4346 38 1 0.3883 0.8553 -4.6792 39 1 -0.8684 6.4377 -6.0846 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367645443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:56 Heat of formation + Delta-G solvation = -49.994987 kcal Electronic energy + Delta-G solvation = -17843.244633 eV Core-core repulsion = 15104.895968 eV Total energy + Delta-G solvation = -2738.348665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.12407 -37.19488 -34.06911 -32.51539 -32.36373 -29.18362 -28.58726 -25.74479 -24.93420 -23.84834 -22.15197 -21.19790 -19.31352 -17.51844 -17.01690 -16.50757 -15.73947 -15.45593 -14.83356 -14.74261 -14.40780 -14.02232 -13.75783 -13.17842 -13.15621 -12.53556 -12.38560 -12.16633 -11.78660 -11.64631 -11.52083 -11.33464 -11.07710 -11.05429 -10.94418 -10.71837 -10.62641 -10.50936 -10.24525 -9.72796 -9.50219 -9.07314 -8.39765 -8.14296 -6.56324 -6.24866 -3.95791 3.20247 3.21692 3.26326 3.53113 3.61065 4.01125 4.20495 4.66673 4.81494 4.85855 5.01907 5.08914 5.11384 5.22926 5.25394 5.29778 5.41807 5.45956 5.51955 5.58183 5.62636 5.64975 5.76341 5.77043 5.81477 5.88982 5.98486 6.11688 6.17420 6.26630 6.33158 6.47449 6.70064 7.07739 7.14498 7.36569 7.58107 8.34293 9.21382 10.83317 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.044994 B = 0.003846 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.154307 B = 7278.144197 C = 7426.482387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.080 3.920 3 H 0.043 0.957 4 C -0.142 4.142 5 C 0.070 3.930 6 O -0.381 6.381 7 C 0.074 3.926 8 C 0.018 3.982 9 N -0.521 5.521 10 C 0.052 3.948 11 C -0.135 4.135 12 C -0.109 4.109 13 S -0.137 6.137 14 C -0.517 4.517 15 H 0.072 0.928 16 C 0.072 3.928 17 N -0.871 5.871 18 Si 0.918 3.082 19 H -0.283 1.283 20 H -0.274 1.274 21 H -0.274 1.274 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 -12.043 11.748 18.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 H 0.061 0.939 4 C -0.181 4.181 5 C -0.008 4.008 6 O -0.300 6.300 7 C -0.003 4.003 8 C -0.111 4.111 9 N -0.245 5.245 10 C -0.076 4.076 11 C -0.175 4.175 12 C -0.258 4.258 13 S 0.091 5.909 14 C -0.665 4.665 15 H 0.090 0.910 16 C -0.137 4.137 17 N -0.506 5.506 18 Si 0.744 3.256 19 H -0.208 1.208 20 H -0.199 1.199 21 H -0.199 1.199 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.577 -11.711 12.295 18.593 hybrid contribution -1.651 0.459 -1.687 2.405 sum 5.925 -11.251 10.608 16.560 Atomic orbital electron populations 1.22223 0.94392 1.02542 1.02742 1.20628 0.95806 0.95777 0.90525 0.93887 1.21309 0.96904 1.02763 0.97082 1.22306 0.92898 0.91854 0.93709 1.87394 1.83805 1.36695 1.22092 1.23043 0.95079 0.99100 0.83119 1.22484 0.89862 0.97197 1.01569 1.61650 1.01383 1.58057 1.03366 1.22503 0.97944 0.94790 0.92403 1.22030 0.99737 0.96652 0.99039 1.23187 1.00209 1.02724 0.99713 1.84615 1.53275 1.01977 1.51058 1.22644 1.23133 0.97233 1.23471 0.90999 1.25009 0.96793 0.94757 0.97161 1.70009 1.40150 0.99197 1.41252 0.86227 0.81091 0.77339 0.80899 1.20801 1.19914 1.19904 0.91905 0.92318 0.91049 0.90921 0.90313 0.93665 0.90027 0.93207 0.89363 0.89926 0.93945 0.89784 0.90762 0.91752 0.91443 0.92170 0.92119 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 7.75 37.16 0.29 -1.57 16 2 C 0.08 0.94 1.51 -70.28 -0.11 0.83 16 3 H 0.04 0.55 6.81 -51.93 -0.35 0.19 16 4 C -0.14 -1.47 4.93 -29.09 -0.14 -1.61 16 5 C 0.07 0.71 6.39 37.87 0.24 0.95 16 6 O -0.38 -4.62 10.27 -33.66 -0.35 -4.97 16 7 C 0.07 0.78 7.02 37.59 0.26 1.04 16 8 C 0.02 0.21 4.01 -4.75 -0.02 0.19 16 9 N -0.52 -6.49 4.56 -231.17 -1.05 -7.55 16 10 C 0.05 0.70 4.60 -3.82 -0.02 0.68 16 11 C -0.13 -2.14 4.13 -26.73 -0.11 -2.25 16 12 C -0.11 -2.17 5.67 37.16 0.21 -1.96 16 13 S -0.14 -3.59 21.44 -107.50 -2.30 -5.89 16 14 C -0.52 -14.83 9.50 30.94 0.29 -14.54 16 15 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 16 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 17 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 18 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H 0.06 0.70 8.05 -51.92 -0.42 0.28 16 23 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 24 H 0.07 0.93 5.10 -51.93 -0.26 0.66 16 25 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.45 7.15 -51.93 -0.37 0.08 16 28 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.93 7.08 -51.93 -0.37 0.57 16 32 H 0.04 0.51 6.72 -51.93 -0.35 0.16 16 33 H 0.08 1.10 5.91 -51.93 -0.31 0.80 16 34 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.06 1.05 7.03 -51.93 -0.37 0.68 16 36 H 0.07 1.11 5.95 -51.93 -0.31 0.80 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 38 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -31.06 310.49 -8.96 -40.02 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.45 Total: -1.20 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 0.81 Total: -16.28 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: -0.32 Total: -32.84 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.35 Total: -4.97 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.30 Total: -5.89 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.06 -8.96 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367645443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.977 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds