Wall clock time and date at job start Mon Mar 30 2020 04:36:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 108.78615 * 2 1
4 4 C 1.46574 * 108.89296 * 118.55631 * 2 1 3
5 5 C 1.54353 * 111.47424 * 181.56397 * 4 2 1
6 6 O 1.40309 * 108.92449 * 283.02148 * 5 4 2
7 7 C 1.44245 * 117.15698 * 93.11115 * 6 5 4
8 8 C 1.53839 * 112.83677 * 317.92234 * 7 6 5
9 9 N 1.44353 * 112.12060 * 318.50293 * 8 7 6
10 10 C 1.46900 * 110.99855 * 215.88675 * 9 8 7
11 11 C 1.53003 * 109.46754 * 302.04332 * 10 9 8
12 12 C 1.53007 * 109.47069 * 185.30642 * 11 10 9
13 13 S 1.80998 * 109.47285 * 179.97438 * 12 11 10
14 14 C 1.76199 * 100.00096 * 179.97438 * 13 12 11
15 15 H 1.08004 * 119.99788 * 0.02562 * 14 13 12
16 16 C 1.38792 * 119.99944 * 180.02562 * 14 13 12
17 17 N 1.31629 * 120.00436 * 359.97438 * 16 14 13
18 18 Si 1.86801 * 119.99991 * 180.27548 * 16 14 13
19 19 H 1.48496 * 109.47593 * 179.72069 * 18 16 14
20 20 H 1.48504 * 109.47217 * 299.72374 * 18 16 14
21 21 H 1.48505 * 109.47341 * 59.72047 * 18 16 14
22 22 H 1.09010 * 109.46901 * 178.54507 * 1 2 3
23 23 H 1.08994 * 109.47281 * 298.54644 * 1 2 3
24 24 H 1.08998 * 109.47299 * 58.55239 * 1 2 3
25 25 H 1.09001 * 109.08098 * 302.07816 * 4 2 1
26 26 H 1.09002 * 109.08156 * 61.04799 * 4 2 1
27 27 H 1.09003 * 109.56815 * 42.85472 * 5 4 2
28 28 H 1.09009 * 109.56236 * 163.18971 * 5 4 2
29 29 H 1.09006 * 108.80572 * 78.78577 * 7 6 5
30 30 H 1.09006 * 108.81022 * 197.16508 * 7 6 5
31 31 H 1.08994 * 108.95055 * 197.82183 * 8 7 6
32 32 H 1.08997 * 108.95191 * 79.18078 * 8 7 6
33 33 H 1.08998 * 109.47135 * 182.04443 * 10 9 8
34 34 H 1.08998 * 109.47290 * 62.04242 * 10 9 8
35 35 H 1.08991 * 109.47206 * 65.30559 * 11 10 9
36 36 H 1.08995 * 109.47177 * 305.30119 * 11 10 9
37 37 H 1.08998 * 109.47073 * 59.99513 * 12 11 10
38 38 H 1.09004 * 109.47028 * 300.00226 * 12 11 10
39 39 H 0.96993 * 120.00522 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8810 1.0320 0.0000
4 6 2.0046 -0.6629 1.2181
5 6 3.5461 -0.6618 1.2980
6 8 4.0473 -1.6460 0.4327
7 6 4.3962 -1.2315 -0.9042
8 6 3.3651 -0.2695 -1.5192
9 7 2.0086 -0.6682 -1.2284
10 6 1.1210 -0.3820 -2.3634
11 6 1.1777 1.1114 -2.6911
12 6 0.1565 1.4328 -3.7842
13 16 0.2229 3.1996 -4.1714
14 6 -1.0162 3.2859 -5.4211
15 1 -1.5472 2.3933 -5.7176
16 6 -1.3100 4.5008 -6.0244
17 7 -0.6633 5.5887 -5.6627
18 14 -2.6291 4.5936 -7.3438
19 1 -2.7548 5.9944 -7.8205
20 1 -2.2543 3.7154 -8.4812
21 1 -3.9270 4.1448 -6.7787
22 1 -0.3633 -1.0274 -0.0261
23 1 -0.3633 0.4911 0.9027
24 1 -0.3634 0.5361 -0.8767
25 1 1.6024 -0.1421 2.0870
26 1 1.6482 -1.6930 1.2251
27 1 3.9264 0.3150 0.9991
28 1 3.8587 -0.8801 2.3192
29 1 5.3666 -0.7357 -0.8764
30 1 4.4716 -2.1153 -1.5378
31 1 3.5033 -0.2463 -2.6001
32 1 3.5330 0.7311 -1.1209
33 1 0.0990 -0.6586 -2.1042
34 1 1.4440 -0.9570 -3.2312
35 1 2.1773 1.3690 -3.0408
36 1 0.9457 1.6888 -1.7962
37 1 -0.8433 1.1752 -3.4346
38 1 0.3883 0.8553 -4.6792
39 1 -0.8684 6.4377 -6.0846
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000367645443.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:36:56
Heat of formation + Delta-G solvation = -49.994987 kcal
Electronic energy + Delta-G solvation = -17843.244633 eV
Core-core repulsion = 15104.895968 eV
Total energy + Delta-G solvation = -2738.348665 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.12407 -37.19488 -34.06911 -32.51539 -32.36373 -29.18362 -28.58726 -25.74479
-24.93420 -23.84834 -22.15197 -21.19790 -19.31352 -17.51844 -17.01690 -16.50757
-15.73947 -15.45593 -14.83356 -14.74261 -14.40780 -14.02232 -13.75783 -13.17842
-13.15621 -12.53556 -12.38560 -12.16633 -11.78660 -11.64631 -11.52083 -11.33464
-11.07710 -11.05429 -10.94418 -10.71837 -10.62641 -10.50936 -10.24525 -9.72796
-9.50219 -9.07314 -8.39765 -8.14296 -6.56324 -6.24866 -3.95791 3.20247
3.21692 3.26326 3.53113 3.61065 4.01125 4.20495 4.66673 4.81494
4.85855 5.01907 5.08914 5.11384 5.22926 5.25394 5.29778 5.41807
5.45956 5.51955 5.58183 5.62636 5.64975 5.76341 5.77043 5.81477
5.88982 5.98486 6.11688 6.17420 6.26630 6.33158 6.47449 6.70064
7.07739 7.14498 7.36569 7.58107 8.34293 9.21382 10.83317
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.044994 B = 0.003846 C = 0.003769
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 622.154307 B = 7278.144197 C = 7426.482387
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.080 3.920
3 H 0.043 0.957
4 C -0.142 4.142
5 C 0.070 3.930
6 O -0.381 6.381
7 C 0.074 3.926
8 C 0.018 3.982
9 N -0.521 5.521
10 C 0.052 3.948
11 C -0.135 4.135
12 C -0.109 4.109
13 S -0.137 6.137
14 C -0.517 4.517
15 H 0.072 0.928
16 C 0.072 3.928
17 N -0.871 5.871
18 Si 0.918 3.082
19 H -0.283 1.283
20 H -0.274 1.274
21 H -0.274 1.274
22 H 0.062 0.938
23 H 0.058 0.942
24 H 0.071 0.929
25 H 0.072 0.928
26 H 0.078 0.922
27 H 0.045 0.955
28 H 0.082 0.918
29 H 0.050 0.950
30 H 0.088 0.912
31 H 0.082 0.918
32 H 0.042 0.958
33 H 0.084 0.916
34 H 0.074 0.926
35 H 0.064 0.936
36 H 0.067 0.933
37 H 0.060 0.940
38 H 0.060 0.940
39 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.889 -12.043 11.748 18.180
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.027 4.027
3 H 0.061 0.939
4 C -0.181 4.181
5 C -0.008 4.008
6 O -0.300 6.300
7 C -0.003 4.003
8 C -0.111 4.111
9 N -0.245 5.245
10 C -0.076 4.076
11 C -0.175 4.175
12 C -0.258 4.258
13 S 0.091 5.909
14 C -0.665 4.665
15 H 0.090 0.910
16 C -0.137 4.137
17 N -0.506 5.506
18 Si 0.744 3.256
19 H -0.208 1.208
20 H -0.199 1.199
21 H -0.199 1.199
22 H 0.081 0.919
23 H 0.077 0.923
24 H 0.090 0.910
25 H 0.091 0.909
26 H 0.097 0.903
27 H 0.063 0.937
28 H 0.100 0.900
29 H 0.068 0.932
30 H 0.106 0.894
31 H 0.101 0.899
32 H 0.061 0.939
33 H 0.102 0.898
34 H 0.092 0.908
35 H 0.082 0.918
36 H 0.086 0.914
37 H 0.078 0.922
38 H 0.079 0.921
39 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 7.577 -11.711 12.295 18.593
hybrid contribution -1.651 0.459 -1.687 2.405
sum 5.925 -11.251 10.608 16.560
Atomic orbital electron populations
1.22223 0.94392 1.02542 1.02742 1.20628 0.95806 0.95777 0.90525
0.93887 1.21309 0.96904 1.02763 0.97082 1.22306 0.92898 0.91854
0.93709 1.87394 1.83805 1.36695 1.22092 1.23043 0.95079 0.99100
0.83119 1.22484 0.89862 0.97197 1.01569 1.61650 1.01383 1.58057
1.03366 1.22503 0.97944 0.94790 0.92403 1.22030 0.99737 0.96652
0.99039 1.23187 1.00209 1.02724 0.99713 1.84615 1.53275 1.01977
1.51058 1.22644 1.23133 0.97233 1.23471 0.90999 1.25009 0.96793
0.94757 0.97161 1.70009 1.40150 0.99197 1.41252 0.86227 0.81091
0.77339 0.80899 1.20801 1.19914 1.19904 0.91905 0.92318 0.91049
0.90921 0.90313 0.93665 0.90027 0.93207 0.89363 0.89926 0.93945
0.89784 0.90762 0.91752 0.91443 0.92170 0.92119 0.92250
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.85 7.75 37.16 0.29 -1.57 16
2 C 0.08 0.94 1.51 -70.28 -0.11 0.83 16
3 H 0.04 0.55 6.81 -51.93 -0.35 0.19 16
4 C -0.14 -1.47 4.93 -29.09 -0.14 -1.61 16
5 C 0.07 0.71 6.39 37.87 0.24 0.95 16
6 O -0.38 -4.62 10.27 -33.66 -0.35 -4.97 16
7 C 0.07 0.78 7.02 37.59 0.26 1.04 16
8 C 0.02 0.21 4.01 -4.75 -0.02 0.19 16
9 N -0.52 -6.49 4.56 -231.17 -1.05 -7.55 16
10 C 0.05 0.70 4.60 -3.82 -0.02 0.68 16
11 C -0.13 -2.14 4.13 -26.73 -0.11 -2.25 16
12 C -0.11 -2.17 5.67 37.16 0.21 -1.96 16
13 S -0.14 -3.59 21.44 -107.50 -2.30 -5.89 16
14 C -0.52 -14.83 9.50 30.94 0.29 -14.54 16
15 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16
16 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16
17 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16
18 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16
19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
22 H 0.06 0.70 8.05 -51.92 -0.42 0.28 16
23 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16
24 H 0.07 0.93 5.10 -51.93 -0.26 0.66 16
25 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16
26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
27 H 0.04 0.45 7.15 -51.93 -0.37 0.08 16
28 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16
29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
31 H 0.08 0.93 7.08 -51.93 -0.37 0.57 16
32 H 0.04 0.51 6.72 -51.93 -0.35 0.16 16
33 H 0.08 1.10 5.91 -51.93 -0.31 0.80 16
34 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16
35 H 0.06 1.05 7.03 -51.93 -0.37 0.68 16
36 H 0.07 1.11 5.95 -51.93 -0.31 0.80 16
37 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16
38 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16
39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 310.49 15.07 4.68 4.68
Total: -1.00 -31.06 310.49 -8.96 -40.02
By element:
Atomic # 1 Polarization: 5.25 SS G_CDS: -6.45 Total: -1.20 kcal
Atomic # 6 Polarization: -17.09 SS G_CDS: 0.81 Total: -16.28 kcal
Atomic # 7 Polarization: -32.52 SS G_CDS: -0.32 Total: -32.84 kcal
Atomic # 8 Polarization: -4.62 SS G_CDS: -0.35 Total: -4.97 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal
Atomic # 16 Polarization: -3.59 SS G_CDS: -2.30 Total: -5.89 kcal
Total LS contribution 4.68 Total: 4.68 kcal
Total: -31.06 -8.96 -40.02 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000367645443.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.977 kcal
(2) G-P(sol) polarization free energy of solvation -31.059 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.995 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds