Wall clock time and date at job start Mon Mar 30 2020 04:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 108.78615 * 2 1 4 4 C 1.46574 * 108.89296 * 118.55631 * 2 1 3 5 5 C 1.54353 * 111.47424 * 181.56397 * 4 2 1 6 6 O 1.40309 * 108.92449 * 283.02148 * 5 4 2 7 7 C 1.44245 * 117.15698 * 93.11115 * 6 5 4 8 8 C 1.53839 * 112.83677 * 317.92234 * 7 6 5 9 9 N 1.44353 * 112.12060 * 318.50293 * 8 7 6 10 10 C 1.46900 * 110.99855 * 215.88675 * 9 8 7 11 11 C 1.53003 * 109.46754 * 302.04332 * 10 9 8 12 12 C 1.53007 * 109.47069 * 185.30642 * 11 10 9 13 13 S 1.80998 * 109.47285 * 179.97438 * 12 11 10 14 14 C 1.76199 * 100.00096 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99788 * 0.02562 * 14 13 12 16 16 C 1.38792 * 119.99944 * 180.02562 * 14 13 12 17 17 N 1.31629 * 120.00436 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99991 * 180.27548 * 16 14 13 19 19 H 1.48496 * 109.47593 * 179.72069 * 18 16 14 20 20 H 1.48504 * 109.47217 * 299.72374 * 18 16 14 21 21 H 1.48505 * 109.47341 * 59.72047 * 18 16 14 22 22 H 1.09010 * 109.46901 * 178.54507 * 1 2 3 23 23 H 1.08994 * 109.47281 * 298.54644 * 1 2 3 24 24 H 1.08998 * 109.47299 * 58.55239 * 1 2 3 25 25 H 1.09001 * 109.08098 * 302.07816 * 4 2 1 26 26 H 1.09002 * 109.08156 * 61.04799 * 4 2 1 27 27 H 1.09003 * 109.56815 * 42.85472 * 5 4 2 28 28 H 1.09009 * 109.56236 * 163.18971 * 5 4 2 29 29 H 1.09006 * 108.80572 * 78.78577 * 7 6 5 30 30 H 1.09006 * 108.81022 * 197.16508 * 7 6 5 31 31 H 1.08994 * 108.95055 * 197.82183 * 8 7 6 32 32 H 1.08997 * 108.95191 * 79.18078 * 8 7 6 33 33 H 1.08998 * 109.47135 * 182.04443 * 10 9 8 34 34 H 1.08998 * 109.47290 * 62.04242 * 10 9 8 35 35 H 1.08991 * 109.47206 * 65.30559 * 11 10 9 36 36 H 1.08995 * 109.47177 * 305.30119 * 11 10 9 37 37 H 1.08998 * 109.47073 * 59.99513 * 12 11 10 38 38 H 1.09004 * 109.47028 * 300.00226 * 12 11 10 39 39 H 0.96993 * 120.00522 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8810 1.0320 0.0000 4 6 2.0046 -0.6629 1.2181 5 6 3.5461 -0.6618 1.2980 6 8 4.0473 -1.6460 0.4327 7 6 4.3962 -1.2315 -0.9042 8 6 3.3651 -0.2695 -1.5192 9 7 2.0086 -0.6682 -1.2284 10 6 1.1210 -0.3820 -2.3634 11 6 1.1777 1.1114 -2.6911 12 6 0.1565 1.4328 -3.7842 13 16 0.2229 3.1996 -4.1714 14 6 -1.0162 3.2859 -5.4211 15 1 -1.5472 2.3933 -5.7176 16 6 -1.3100 4.5008 -6.0244 17 7 -0.6633 5.5887 -5.6627 18 14 -2.6291 4.5936 -7.3438 19 1 -2.7548 5.9944 -7.8205 20 1 -2.2543 3.7154 -8.4812 21 1 -3.9270 4.1448 -6.7787 22 1 -0.3633 -1.0274 -0.0261 23 1 -0.3633 0.4911 0.9027 24 1 -0.3634 0.5361 -0.8767 25 1 1.6024 -0.1421 2.0870 26 1 1.6482 -1.6930 1.2251 27 1 3.9264 0.3150 0.9991 28 1 3.8587 -0.8801 2.3192 29 1 5.3666 -0.7357 -0.8764 30 1 4.4716 -2.1153 -1.5378 31 1 3.5033 -0.2463 -2.6001 32 1 3.5330 0.7311 -1.1209 33 1 0.0990 -0.6586 -2.1042 34 1 1.4440 -0.9570 -3.2312 35 1 2.1773 1.3690 -3.0408 36 1 0.9457 1.6888 -1.7962 37 1 -0.8433 1.1752 -3.4346 38 1 0.3883 0.8553 -4.6792 39 1 -0.8684 6.4377 -6.0846 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367645443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:56 Heat of formation + Delta-G solvation = -70.306918 kcal Electronic energy + Delta-G solvation = -17844.125424 eV Core-core repulsion = 15104.895968 eV Total energy + Delta-G solvation = -2739.229456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.06721 -38.14423 -35.07816 -34.62424 -33.61284 -30.11440 -29.58731 -27.83697 -26.17485 -24.74588 -23.43505 -22.08257 -20.37964 -19.56393 -17.92954 -17.45967 -16.91293 -16.81880 -16.41967 -16.14968 -15.61678 -15.13486 -15.09639 -14.65704 -14.11598 -13.89051 -13.50174 -13.35356 -13.25214 -12.94229 -12.77395 -12.67885 -12.64434 -12.41646 -12.29344 -11.98652 -11.67117 -11.63562 -11.50867 -11.25211 -11.14890 -10.38143 -10.34079 -9.24192 -8.69735 -8.39160 -6.16139 1.30119 1.39485 1.46347 1.73344 2.26815 2.69459 2.95178 3.13877 3.29212 3.78125 3.87561 3.94440 3.98586 4.08696 4.18867 4.31980 4.35219 4.41872 4.47967 4.56707 4.62953 4.68645 4.70076 4.77574 4.85567 4.90293 4.94511 4.98660 5.09803 5.15266 5.21253 5.37195 5.37833 5.41951 6.06769 6.15890 6.17221 6.54558 7.03012 8.69972 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.044994 B = 0.003846 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.154307 B = 7278.144197 C = 7426.482387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.078 3.922 3 H 0.032 0.968 4 C -0.138 4.138 5 C 0.066 3.934 6 O -0.399 6.399 7 C 0.074 3.926 8 C 0.017 3.983 9 N -0.522 5.522 10 C 0.063 3.937 11 C -0.119 4.119 12 C -0.084 4.084 13 S -0.203 6.203 14 C -0.539 4.539 15 H 0.073 0.927 16 C 0.017 3.983 17 N -0.908 5.908 18 Si 0.993 3.007 19 H -0.275 1.275 20 H -0.264 1.264 21 H -0.264 1.264 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 -13.214 11.919 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.029 4.029 3 H 0.050 0.950 4 C -0.176 4.176 5 C -0.011 4.011 6 O -0.318 6.318 7 C -0.003 4.003 8 C -0.112 4.112 9 N -0.245 5.245 10 C -0.066 4.066 11 C -0.159 4.159 12 C -0.233 4.233 13 S 0.026 5.974 14 C -0.687 4.687 15 H 0.091 0.909 16 C -0.188 4.188 17 N -0.544 5.544 18 Si 0.815 3.185 19 H -0.200 1.200 20 H -0.189 1.189 21 H -0.189 1.189 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.244 -12.891 12.480 19.350 hybrid contribution -1.495 0.783 -1.668 2.373 sum 5.750 -12.109 10.811 17.221 Atomic orbital electron populations 1.22184 0.94194 1.02654 1.02511 1.20706 0.95995 0.95323 0.90868 0.94963 1.21276 0.97162 1.02258 0.96937 1.22444 0.92675 0.91612 0.94362 1.87369 1.84024 1.37717 1.22682 1.23096 0.95241 0.99203 0.82713 1.22539 0.89653 0.97261 1.01797 1.61745 1.01652 1.57956 1.03173 1.22396 0.98643 0.92397 0.93198 1.21932 0.98074 0.98707 0.97185 1.23123 1.01669 0.97518 1.01016 1.84627 1.53348 1.08312 1.51132 1.23010 1.23756 0.97723 1.24228 0.90905 1.26058 0.99116 0.94150 0.99513 1.70144 1.41801 0.99864 1.42638 0.85082 0.77937 0.77788 0.77726 1.19957 1.18880 1.18895 0.91447 0.91146 0.92802 0.89108 0.91069 0.93605 0.88240 0.91700 0.88807 0.89774 0.94576 0.89372 0.90039 0.92148 0.92063 0.91911 0.91846 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 7.75 71.98 0.56 -2.86 16 2 C 0.08 1.74 1.51 42.76 0.06 1.81 16 3 H 0.03 0.79 6.81 -2.39 -0.02 0.78 16 4 C -0.14 -2.60 4.93 29.07 0.14 -2.46 16 5 C 0.07 1.22 6.39 72.44 0.46 1.69 16 6 O -0.40 -8.97 10.27 -143.35 -1.47 -10.44 16 7 C 0.07 1.44 7.02 72.27 0.51 1.95 16 8 C 0.02 0.37 4.01 87.06 0.35 0.71 16 9 N -0.52 -12.29 4.56 -885.29 -4.03 -16.32 16 10 C 0.06 1.59 4.60 86.30 0.40 1.99 16 11 C -0.12 -3.72 4.13 30.60 0.13 -3.59 16 12 C -0.08 -3.31 5.67 71.98 0.41 -2.91 16 13 S -0.20 -10.79 21.44 -56.49 -1.21 -12.00 16 14 C -0.54 -31.23 9.50 67.95 0.65 -30.58 16 15 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 16 C 0.02 0.94 5.49 84.86 0.47 1.41 16 17 N -0.91 -54.94 13.22 21.65 0.29 -54.66 16 18 Si 0.99 43.83 29.55 68.60 2.03 45.85 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H 0.07 1.39 8.05 -2.38 -0.02 1.37 16 23 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 24 H 0.05 1.35 5.10 -2.39 -0.01 1.34 16 25 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 0.84 7.15 -2.39 -0.02 0.82 16 28 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.08 1.80 7.08 -2.39 -0.02 1.78 16 32 H 0.04 0.83 6.72 -2.39 -0.02 0.82 16 33 H 0.09 2.18 5.91 -2.39 -0.01 2.17 16 34 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.06 1.94 7.03 -2.39 -0.02 1.93 16 36 H 0.06 2.01 5.95 -2.39 -0.01 1.99 16 37 H 0.06 2.45 8.14 -2.40 -0.02 2.43 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -66.40 310.49 0.73 -65.66 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.01 Total: 14.75 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 4.13 Total: -32.84 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -3.75 Total: -70.98 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.47 Total: -10.44 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -10.79 SS G_CDS: -1.21 Total: -12.00 kcal Total: -66.40 0.73 -65.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367645443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.644 kcal (2) G-P(sol) polarization free energy of solvation -66.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds