Wall clock time and date at job start Mon Mar 30 2020 04:36:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 108.78615 * 2 1
4 4 C 1.46574 * 108.89296 * 118.55631 * 2 1 3
5 5 C 1.54353 * 111.47424 * 181.56397 * 4 2 1
6 6 O 1.40309 * 108.92449 * 283.02148 * 5 4 2
7 7 C 1.44245 * 117.15698 * 93.11115 * 6 5 4
8 8 C 1.53839 * 112.83677 * 317.92234 * 7 6 5
9 9 N 1.44353 * 112.12060 * 318.50293 * 8 7 6
10 10 C 1.46900 * 110.99855 * 215.88675 * 9 8 7
11 11 C 1.53003 * 109.46754 * 302.04332 * 10 9 8
12 12 C 1.53007 * 109.47069 * 185.30642 * 11 10 9
13 13 S 1.80998 * 109.47285 * 179.97438 * 12 11 10
14 14 C 1.76199 * 100.00096 * 179.97438 * 13 12 11
15 15 H 1.08004 * 119.99788 * 0.02562 * 14 13 12
16 16 C 1.38792 * 119.99944 * 180.02562 * 14 13 12
17 17 N 1.31629 * 120.00436 * 359.97438 * 16 14 13
18 18 Si 1.86801 * 119.99991 * 180.27548 * 16 14 13
19 19 H 1.48496 * 109.47593 * 179.72069 * 18 16 14
20 20 H 1.48504 * 109.47217 * 299.72374 * 18 16 14
21 21 H 1.48505 * 109.47341 * 59.72047 * 18 16 14
22 22 H 1.09010 * 109.46901 * 178.54507 * 1 2 3
23 23 H 1.08994 * 109.47281 * 298.54644 * 1 2 3
24 24 H 1.08998 * 109.47299 * 58.55239 * 1 2 3
25 25 H 1.09001 * 109.08098 * 302.07816 * 4 2 1
26 26 H 1.09002 * 109.08156 * 61.04799 * 4 2 1
27 27 H 1.09003 * 109.56815 * 42.85472 * 5 4 2
28 28 H 1.09009 * 109.56236 * 163.18971 * 5 4 2
29 29 H 1.09006 * 108.80572 * 78.78577 * 7 6 5
30 30 H 1.09006 * 108.81022 * 197.16508 * 7 6 5
31 31 H 1.08994 * 108.95055 * 197.82183 * 8 7 6
32 32 H 1.08997 * 108.95191 * 79.18078 * 8 7 6
33 33 H 1.08998 * 109.47135 * 182.04443 * 10 9 8
34 34 H 1.08998 * 109.47290 * 62.04242 * 10 9 8
35 35 H 1.08991 * 109.47206 * 65.30559 * 11 10 9
36 36 H 1.08995 * 109.47177 * 305.30119 * 11 10 9
37 37 H 1.08998 * 109.47073 * 59.99513 * 12 11 10
38 38 H 1.09004 * 109.47028 * 300.00226 * 12 11 10
39 39 H 0.96993 * 120.00522 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8810 1.0320 0.0000
4 6 2.0046 -0.6629 1.2181
5 6 3.5461 -0.6618 1.2980
6 8 4.0473 -1.6460 0.4327
7 6 4.3962 -1.2315 -0.9042
8 6 3.3651 -0.2695 -1.5192
9 7 2.0086 -0.6682 -1.2284
10 6 1.1210 -0.3820 -2.3634
11 6 1.1777 1.1114 -2.6911
12 6 0.1565 1.4328 -3.7842
13 16 0.2229 3.1996 -4.1714
14 6 -1.0162 3.2859 -5.4211
15 1 -1.5472 2.3933 -5.7176
16 6 -1.3100 4.5008 -6.0244
17 7 -0.6633 5.5887 -5.6627
18 14 -2.6291 4.5936 -7.3438
19 1 -2.7548 5.9944 -7.8205
20 1 -2.2543 3.7154 -8.4812
21 1 -3.9270 4.1448 -6.7787
22 1 -0.3633 -1.0274 -0.0261
23 1 -0.3633 0.4911 0.9027
24 1 -0.3634 0.5361 -0.8767
25 1 1.6024 -0.1421 2.0870
26 1 1.6482 -1.6930 1.2251
27 1 3.9264 0.3150 0.9991
28 1 3.8587 -0.8801 2.3192
29 1 5.3666 -0.7357 -0.8764
30 1 4.4716 -2.1153 -1.5378
31 1 3.5033 -0.2463 -2.6001
32 1 3.5330 0.7311 -1.1209
33 1 0.0990 -0.6586 -2.1042
34 1 1.4440 -0.9570 -3.2312
35 1 2.1773 1.3690 -3.0408
36 1 0.9457 1.6888 -1.7962
37 1 -0.8433 1.1752 -3.4346
38 1 0.3883 0.8553 -4.6792
39 1 -0.8684 6.4377 -6.0846
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000367645443.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:36:56
Heat of formation + Delta-G solvation = -70.306918 kcal
Electronic energy + Delta-G solvation = -17844.125424 eV
Core-core repulsion = 15104.895968 eV
Total energy + Delta-G solvation = -2739.229456 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.06721 -38.14423 -35.07816 -34.62424 -33.61284 -30.11440 -29.58731 -27.83697
-26.17485 -24.74588 -23.43505 -22.08257 -20.37964 -19.56393 -17.92954 -17.45967
-16.91293 -16.81880 -16.41967 -16.14968 -15.61678 -15.13486 -15.09639 -14.65704
-14.11598 -13.89051 -13.50174 -13.35356 -13.25214 -12.94229 -12.77395 -12.67885
-12.64434 -12.41646 -12.29344 -11.98652 -11.67117 -11.63562 -11.50867 -11.25211
-11.14890 -10.38143 -10.34079 -9.24192 -8.69735 -8.39160 -6.16139 1.30119
1.39485 1.46347 1.73344 2.26815 2.69459 2.95178 3.13877 3.29212
3.78125 3.87561 3.94440 3.98586 4.08696 4.18867 4.31980 4.35219
4.41872 4.47967 4.56707 4.62953 4.68645 4.70076 4.77574 4.85567
4.90293 4.94511 4.98660 5.09803 5.15266 5.21253 5.37195 5.37833
5.41951 6.06769 6.15890 6.17221 6.54558 7.03012 8.69972
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.044994 B = 0.003846 C = 0.003769
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 622.154307 B = 7278.144197 C = 7426.482387
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.078 3.922
3 H 0.032 0.968
4 C -0.138 4.138
5 C 0.066 3.934
6 O -0.399 6.399
7 C 0.074 3.926
8 C 0.017 3.983
9 N -0.522 5.522
10 C 0.063 3.937
11 C -0.119 4.119
12 C -0.084 4.084
13 S -0.203 6.203
14 C -0.539 4.539
15 H 0.073 0.927
16 C 0.017 3.983
17 N -0.908 5.908
18 Si 0.993 3.007
19 H -0.275 1.275
20 H -0.264 1.264
21 H -0.264 1.264
22 H 0.067 0.933
23 H 0.070 0.930
24 H 0.053 0.947
25 H 0.091 0.909
26 H 0.071 0.929
27 H 0.046 0.954
28 H 0.100 0.900
29 H 0.065 0.935
30 H 0.094 0.906
31 H 0.084 0.916
32 H 0.036 0.964
33 H 0.088 0.912
34 H 0.081 0.919
35 H 0.060 0.940
36 H 0.061 0.939
37 H 0.062 0.938
38 H 0.063 0.937
39 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.545 -13.214 11.919 18.961
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.029 4.029
3 H 0.050 0.950
4 C -0.176 4.176
5 C -0.011 4.011
6 O -0.318 6.318
7 C -0.003 4.003
8 C -0.112 4.112
9 N -0.245 5.245
10 C -0.066 4.066
11 C -0.159 4.159
12 C -0.233 4.233
13 S 0.026 5.974
14 C -0.687 4.687
15 H 0.091 0.909
16 C -0.188 4.188
17 N -0.544 5.544
18 Si 0.815 3.185
19 H -0.200 1.200
20 H -0.189 1.189
21 H -0.189 1.189
22 H 0.086 0.914
23 H 0.089 0.911
24 H 0.072 0.928
25 H 0.109 0.891
26 H 0.089 0.911
27 H 0.064 0.936
28 H 0.118 0.882
29 H 0.083 0.917
30 H 0.112 0.888
31 H 0.102 0.898
32 H 0.054 0.946
33 H 0.106 0.894
34 H 0.100 0.900
35 H 0.079 0.921
36 H 0.079 0.921
37 H 0.081 0.919
38 H 0.082 0.918
39 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 7.244 -12.891 12.480 19.350
hybrid contribution -1.495 0.783 -1.668 2.373
sum 5.750 -12.109 10.811 17.221
Atomic orbital electron populations
1.22184 0.94194 1.02654 1.02511 1.20706 0.95995 0.95323 0.90868
0.94963 1.21276 0.97162 1.02258 0.96937 1.22444 0.92675 0.91612
0.94362 1.87369 1.84024 1.37717 1.22682 1.23096 0.95241 0.99203
0.82713 1.22539 0.89653 0.97261 1.01797 1.61745 1.01652 1.57956
1.03173 1.22396 0.98643 0.92397 0.93198 1.21932 0.98074 0.98707
0.97185 1.23123 1.01669 0.97518 1.01016 1.84627 1.53348 1.08312
1.51132 1.23010 1.23756 0.97723 1.24228 0.90905 1.26058 0.99116
0.94150 0.99513 1.70144 1.41801 0.99864 1.42638 0.85082 0.77937
0.77788 0.77726 1.19957 1.18880 1.18895 0.91447 0.91146 0.92802
0.89108 0.91069 0.93605 0.88240 0.91700 0.88807 0.89774 0.94576
0.89372 0.90039 0.92148 0.92063 0.91911 0.91846 0.91955
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.42 7.75 71.98 0.56 -2.86 16
2 C 0.08 1.74 1.51 42.76 0.06 1.81 16
3 H 0.03 0.79 6.81 -2.39 -0.02 0.78 16
4 C -0.14 -2.60 4.93 29.07 0.14 -2.46 16
5 C 0.07 1.22 6.39 72.44 0.46 1.69 16
6 O -0.40 -8.97 10.27 -143.35 -1.47 -10.44 16
7 C 0.07 1.44 7.02 72.27 0.51 1.95 16
8 C 0.02 0.37 4.01 87.06 0.35 0.71 16
9 N -0.52 -12.29 4.56 -885.29 -4.03 -16.32 16
10 C 0.06 1.59 4.60 86.30 0.40 1.99 16
11 C -0.12 -3.72 4.13 30.60 0.13 -3.59 16
12 C -0.08 -3.31 5.67 71.98 0.41 -2.91 16
13 S -0.20 -10.79 21.44 -56.49 -1.21 -12.00 16
14 C -0.54 -31.23 9.50 67.95 0.65 -30.58 16
15 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16
16 C 0.02 0.94 5.49 84.86 0.47 1.41 16
17 N -0.91 -54.94 13.22 21.65 0.29 -54.66 16
18 Si 0.99 43.83 29.55 68.60 2.03 45.85 16
19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16
20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16
21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16
22 H 0.07 1.39 8.05 -2.38 -0.02 1.37 16
23 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16
24 H 0.05 1.35 5.10 -2.39 -0.01 1.34 16
25 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16
26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
27 H 0.05 0.84 7.15 -2.39 -0.02 0.82 16
28 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16
29 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16
30 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16
31 H 0.08 1.80 7.08 -2.39 -0.02 1.78 16
32 H 0.04 0.83 6.72 -2.39 -0.02 0.82 16
33 H 0.09 2.18 5.91 -2.39 -0.01 2.17 16
34 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16
35 H 0.06 1.94 7.03 -2.39 -0.02 1.93 16
36 H 0.06 2.01 5.95 -2.39 -0.01 1.99 16
37 H 0.06 2.45 8.14 -2.40 -0.02 2.43 16
38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16
39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16
Total: -1.00 -66.40 310.49 0.73 -65.66
By element:
Atomic # 1 Polarization: 13.74 SS G_CDS: 1.01 Total: 14.75 kcal
Atomic # 6 Polarization: -36.97 SS G_CDS: 4.13 Total: -32.84 kcal
Atomic # 7 Polarization: -67.23 SS G_CDS: -3.75 Total: -70.98 kcal
Atomic # 8 Polarization: -8.97 SS G_CDS: -1.47 Total: -10.44 kcal
Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal
Atomic # 16 Polarization: -10.79 SS G_CDS: -1.21 Total: -12.00 kcal
Total: -66.40 0.73 -65.66 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000367645443.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.644 kcal
(2) G-P(sol) polarization free energy of solvation -66.398 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.042 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.663 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.307 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds