Wall clock time and date at job start Mon Mar 30 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81394 * 109.47612 * 2 1 4 4 C 1.81397 * 103.00227 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.90715 * 43.74634 * 4 3 2 6 6 C 1.53782 * 113.61288 * 272.49654 * 4 3 2 7 7 C 1.53781 * 87.08189 * 270.88242 * 6 4 3 8 8 C 1.53784 * 113.61794 * 174.99933 * 4 3 2 9 9 O 1.42895 * 113.69490 * 203.67747 * 8 4 3 10 10 C 1.53007 * 113.61112 * 334.56852 * 8 4 3 11 11 N 1.46903 * 109.46874 * 177.00186 * 10 8 4 12 12 C 1.46899 * 110.99785 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.47478 * 34.99513 * 12 11 10 14 14 C 1.53004 * 109.46918 * 274.99968 * 12 11 10 15 15 C 1.50701 * 109.47183 * 154.99818 * 12 11 10 16 16 H 1.08004 * 119.99660 * 95.27197 * 15 12 11 17 17 C 1.37870 * 120.00037 * 275.26916 * 15 12 11 18 18 N 1.31522 * 120.00009 * 5.45006 * 17 15 12 19 19 Si 1.86797 * 120.00032 * 185.44210 * 17 15 12 20 20 H 1.48501 * 109.47300 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.47066 * 300.00340 * 19 17 15 22 22 H 1.48497 * 109.47125 * 60.00445 * 19 17 15 23 23 H 1.09003 * 109.47369 * 300.00712 * 1 2 3 24 24 H 1.09004 * 109.46700 * 59.99796 * 1 2 3 25 25 H 1.08993 * 109.47723 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47369 * 239.99288 * 2 1 3 27 27 H 1.09004 * 109.46700 * 120.00204 * 2 1 3 28 28 H 1.09003 * 113.61472 * 156.33533 * 6 4 3 29 29 H 1.09000 * 113.69356 * 25.44351 * 6 4 3 30 30 H 1.09006 * 113.61339 * 220.02292 * 7 6 4 31 31 H 1.08996 * 113.61581 * 89.11511 * 7 6 4 32 32 H 0.96700 * 114.00465 * 181.60200 * 9 8 4 33 33 H 1.08999 * 109.46877 * 56.99966 * 10 8 4 34 34 H 1.08992 * 109.46959 * 297.00018 * 10 8 4 35 35 H 1.00893 * 111.00075 * 56.04190 * 11 10 8 36 36 H 1.09000 * 109.47134 * 175.07778 * 14 12 11 37 37 H 1.09000 * 109.46661 * 295.07754 * 14 12 11 38 38 H 1.08998 * 109.47207 * 55.07906 * 14 12 11 39 39 H 0.96996 * 119.99616 * 355.04447 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7101 0.0000 4 6 3.9371 1.5056 0.0008 5 1 4.2772 0.7370 -0.6932 6 6 4.5417 1.3754 1.4088 7 6 4.6623 2.9085 1.4133 8 6 4.7076 2.8308 -0.1219 9 8 6.0274 2.6811 -0.6488 10 6 3.9133 3.9396 -0.8153 11 7 4.7030 5.1783 -0.8196 12 6 3.9700 6.2676 -1.4784 13 1 2.9053 6.1695 -1.2664 14 6 4.1979 6.1947 -2.9896 15 6 4.4655 7.5927 -0.9590 16 1 5.2297 8.1326 -1.4986 17 6 3.9434 8.1157 0.2049 18 7 3.0923 7.4114 0.9186 19 14 4.4449 9.8246 0.7683 20 1 3.7491 10.1511 2.0389 21 1 5.9136 9.8634 0.9847 22 1 4.0713 10.8178 -0.2705 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 5.5030 0.8618 1.4255 29 1 3.8431 0.9902 2.1515 30 1 5.5878 3.2723 1.8596 31 1 3.7775 3.4149 1.7989 32 1 6.5248 3.5085 -0.7050 33 1 2.9787 4.1063 -0.2798 34 1 3.6963 3.6436 -1.8416 35 1 5.6020 5.0326 -1.2538 36 1 3.5857 6.9476 -3.4861 37 1 5.2496 6.3800 -3.2077 38 1 3.9206 5.2046 -3.3515 39 1 2.7767 6.5549 0.5906 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379971359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:54 Heat of formation + Delta-G solvation = -36.814970 kcal Electronic energy + Delta-G solvation = -18120.065222 eV Core-core repulsion = 15382.288086 eV Total energy + Delta-G solvation = -2737.777137 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50783 -35.83048 -34.40880 -32.88303 -32.09943 -29.51353 -26.12537 -25.75567 -24.42736 -23.41035 -21.87089 -20.54632 -19.67405 -17.13124 -16.27884 -15.95957 -15.30424 -15.17279 -14.86954 -14.53236 -13.73333 -13.67160 -13.45908 -13.15951 -13.05907 -12.49750 -12.11966 -11.97687 -11.74634 -11.59515 -11.30950 -11.24708 -11.07962 -10.85682 -10.82236 -10.69013 -10.21951 -10.05777 -9.70473 -9.54041 -9.44436 -8.53739 -8.30375 -7.58438 -7.12278 -6.25264 -3.97880 1.61482 2.61449 3.49142 3.50488 3.69286 4.16470 4.56885 4.60062 4.78786 4.80284 4.88511 5.01574 5.16424 5.25982 5.34010 5.56141 5.61057 5.66232 5.73454 5.86057 5.93391 5.95279 6.01763 6.22599 6.31871 6.35671 6.41573 6.50901 6.53106 6.61042 6.94504 7.12603 7.83909 8.06312 8.37472 8.51956 8.63784 8.99182 9.80164 11.15227 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.005503 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.864023 B = 5086.676614 C = 5289.992621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 S -0.196 6.196 4 C -0.082 4.082 5 H 0.092 0.908 6 C -0.126 4.126 7 C -0.142 4.142 8 C 0.142 3.858 9 O -0.550 6.550 10 C 0.041 3.959 11 N -0.669 5.669 12 C 0.193 3.807 13 H 0.039 0.961 14 C -0.163 4.163 15 C -0.586 4.586 16 H 0.045 0.955 17 C 0.032 3.968 18 N -0.897 5.897 19 Si 1.066 2.934 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.290 1.290 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.386 0.614 33 H 0.083 0.917 34 H 0.021 0.979 35 H 0.310 0.690 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.023 0.977 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.788 -14.110 -0.984 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.253 4.253 3 S 0.032 5.968 4 C -0.212 4.212 5 H 0.111 0.889 6 C -0.165 4.165 7 C -0.180 4.180 8 C 0.100 3.900 9 O -0.358 6.358 10 C -0.090 4.090 11 N -0.301 5.301 12 C 0.088 3.912 13 H 0.057 0.943 14 C -0.222 4.222 15 C -0.625 4.625 16 H 0.063 0.937 17 C -0.175 4.175 18 N -0.532 5.532 19 Si 0.895 3.105 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.217 1.217 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.237 0.763 33 H 0.101 0.899 34 H 0.039 0.961 35 H 0.128 0.872 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.980 -12.531 0.831 12.714 hybrid contribution 1.300 -2.067 -2.306 3.359 sum -0.681 -14.599 -1.476 14.689 Atomic orbital electron populations 1.21480 0.92292 1.02236 1.03354 1.23385 1.00145 0.97206 1.04570 1.87059 1.01984 1.10225 1.97565 1.24482 0.93835 1.01473 1.01419 0.88934 1.23109 1.00610 0.98441 0.94372 1.23455 1.03696 0.94747 0.96134 1.21902 0.82952 0.91539 0.93618 1.86279 1.25863 1.37388 1.86269 1.22455 0.97810 0.90914 0.97803 1.61620 1.04896 1.03428 1.60156 1.19373 0.94721 0.90038 0.87113 0.94320 1.22409 1.00425 0.98427 1.00966 1.21761 1.25667 1.02741 1.12312 0.93697 1.25724 0.94882 1.03797 0.93122 1.70706 1.30527 1.14854 1.37118 0.83608 0.75884 0.74925 0.76123 1.20938 1.21607 1.21674 0.91573 0.91680 0.91382 0.90489 0.90323 0.89704 0.90957 0.90772 0.88425 0.76325 0.89916 0.96111 0.87205 0.93310 0.94006 0.95826 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.92 37.15 0.37 -0.90 16 2 C -0.10 -1.13 6.66 37.15 0.25 -0.88 16 3 S -0.20 -2.89 19.24 -107.50 -2.07 -4.95 16 4 C -0.08 -1.23 4.17 -25.92 -0.11 -1.34 16 5 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 6 C -0.13 -1.74 7.62 -25.92 -0.20 -1.94 16 7 C -0.14 -2.37 7.20 -25.92 -0.19 -2.56 16 8 C 0.14 2.42 1.50 -89.80 -0.13 2.28 16 9 O -0.55 -9.05 13.37 -35.23 -0.47 -9.52 16 10 C 0.04 0.80 4.32 -3.82 -0.02 0.78 16 11 N -0.67 -14.67 6.16 -107.95 -0.66 -15.34 16 12 C 0.19 4.78 2.14 -68.86 -0.15 4.63 16 13 H 0.04 1.05 6.60 -51.93 -0.34 0.71 16 14 C -0.16 -3.49 9.16 37.16 0.34 -3.15 16 15 C -0.59 -16.20 8.64 -34.44 -0.30 -16.50 16 16 H 0.04 1.24 7.81 -52.48 -0.41 0.83 16 17 C 0.03 0.91 5.45 -17.82 -0.10 0.81 16 18 N -0.90 -26.88 13.63 55.43 0.76 -26.12 16 19 Si 1.07 25.16 29.91 -169.99 -5.08 20.07 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.10 1.80 8.00 -51.93 -0.42 1.39 16 32 H 0.39 5.75 7.28 45.56 0.33 6.08 16 33 H 0.08 1.79 6.73 -51.93 -0.35 1.44 16 34 H 0.02 0.42 7.36 -51.93 -0.38 0.04 16 35 H 0.31 6.28 6.77 -39.30 -0.27 6.01 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.02 0.46 7.36 -51.93 -0.38 0.07 16 39 H 0.27 8.24 6.78 -40.82 -0.28 7.97 16 LS Contribution 324.64 15.07 4.89 4.89 Total: -1.00 -29.89 324.64 -8.81 -38.70 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.94 Total: 11.02 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.23 Total: -18.76 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.09 Total: -41.46 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.47 Total: -9.52 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.07 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -2.07 Total: -4.95 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.89 -8.81 -38.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379971359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.887 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds