Wall clock time and date at job start Mon Mar 30 2020 05:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81394 * 109.47612 * 2 1 4 4 C 1.81397 * 103.00227 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.90715 * 43.74634 * 4 3 2 6 6 C 1.53782 * 113.61288 * 272.49654 * 4 3 2 7 7 C 1.53781 * 87.08189 * 270.88242 * 6 4 3 8 8 C 1.53784 * 113.61794 * 174.99933 * 4 3 2 9 9 O 1.42895 * 113.69490 * 203.67747 * 8 4 3 10 10 C 1.53007 * 113.61112 * 334.56852 * 8 4 3 11 11 N 1.46903 * 109.46874 * 177.00186 * 10 8 4 12 12 C 1.46899 * 110.99785 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.47478 * 34.99513 * 12 11 10 14 14 C 1.53004 * 109.46918 * 274.99968 * 12 11 10 15 15 C 1.50701 * 109.47183 * 154.99818 * 12 11 10 16 16 H 1.08004 * 119.99660 * 95.27197 * 15 12 11 17 17 C 1.37870 * 120.00037 * 275.26916 * 15 12 11 18 18 N 1.31522 * 120.00009 * 5.45006 * 17 15 12 19 19 Si 1.86797 * 120.00032 * 185.44210 * 17 15 12 20 20 H 1.48501 * 109.47300 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.47066 * 300.00340 * 19 17 15 22 22 H 1.48497 * 109.47125 * 60.00445 * 19 17 15 23 23 H 1.09003 * 109.47369 * 300.00712 * 1 2 3 24 24 H 1.09004 * 109.46700 * 59.99796 * 1 2 3 25 25 H 1.08993 * 109.47723 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47369 * 239.99288 * 2 1 3 27 27 H 1.09004 * 109.46700 * 120.00204 * 2 1 3 28 28 H 1.09003 * 113.61472 * 156.33533 * 6 4 3 29 29 H 1.09000 * 113.69356 * 25.44351 * 6 4 3 30 30 H 1.09006 * 113.61339 * 220.02292 * 7 6 4 31 31 H 1.08996 * 113.61581 * 89.11511 * 7 6 4 32 32 H 0.96700 * 114.00465 * 181.60200 * 9 8 4 33 33 H 1.08999 * 109.46877 * 56.99966 * 10 8 4 34 34 H 1.08992 * 109.46959 * 297.00018 * 10 8 4 35 35 H 1.00893 * 111.00075 * 56.04190 * 11 10 8 36 36 H 1.09000 * 109.47134 * 175.07778 * 14 12 11 37 37 H 1.09000 * 109.46661 * 295.07754 * 14 12 11 38 38 H 1.08998 * 109.47207 * 55.07906 * 14 12 11 39 39 H 0.96996 * 119.99616 * 355.04447 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7101 0.0000 4 6 3.9371 1.5056 0.0008 5 1 4.2772 0.7370 -0.6932 6 6 4.5417 1.3754 1.4088 7 6 4.6623 2.9085 1.4133 8 6 4.7076 2.8308 -0.1219 9 8 6.0274 2.6811 -0.6488 10 6 3.9133 3.9396 -0.8153 11 7 4.7030 5.1783 -0.8196 12 6 3.9700 6.2676 -1.4784 13 1 2.9053 6.1695 -1.2664 14 6 4.1979 6.1947 -2.9896 15 6 4.4655 7.5927 -0.9590 16 1 5.2297 8.1326 -1.4986 17 6 3.9434 8.1157 0.2049 18 7 3.0923 7.4114 0.9186 19 14 4.4449 9.8246 0.7683 20 1 3.7491 10.1511 2.0389 21 1 5.9136 9.8634 0.9847 22 1 4.0713 10.8178 -0.2705 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 5.5030 0.8618 1.4255 29 1 3.8431 0.9902 2.1515 30 1 5.5878 3.2723 1.8596 31 1 3.7775 3.4149 1.7989 32 1 6.5248 3.5085 -0.7050 33 1 2.9787 4.1063 -0.2798 34 1 3.6963 3.6436 -1.8416 35 1 5.6020 5.0326 -1.2538 36 1 3.5857 6.9476 -3.4861 37 1 5.2496 6.3800 -3.2077 38 1 3.9206 5.2046 -3.3515 39 1 2.7767 6.5549 0.5906 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379971359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:53 Heat of formation + Delta-G solvation = -57.251595 kcal Electronic energy + Delta-G solvation = -18120.951421 eV Core-core repulsion = 15382.288086 eV Total energy + Delta-G solvation = -2738.663335 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86118 -37.66832 -35.73347 -34.15265 -33.67356 -31.29693 -27.62486 -27.05250 -26.51064 -24.27603 -23.37500 -22.46572 -20.95150 -19.05420 -17.71216 -17.23391 -16.70736 -16.60189 -16.01502 -15.60396 -15.55715 -15.23213 -15.01353 -14.80919 -14.50058 -13.77757 -13.65427 -13.36751 -13.10411 -12.90748 -12.75839 -12.57445 -12.55500 -12.46665 -12.23776 -12.01857 -11.94323 -11.68570 -11.46598 -10.91521 -10.69557 -10.56745 -10.36997 -8.96555 -8.71475 -8.47758 -6.22299 0.53982 1.57788 1.58446 1.65353 1.84077 2.64312 2.87895 3.11631 3.35185 3.56942 3.72456 3.80828 4.01713 4.05406 4.09146 4.27667 4.41363 4.48028 4.50801 4.56706 4.60580 4.71670 4.77104 4.82423 4.85785 4.89576 4.97831 5.09825 5.12976 5.20654 5.24294 5.26020 6.01409 6.26440 6.50342 6.57051 6.78815 6.82396 7.64083 8.90935 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.005503 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.864023 B = 5086.676614 C = 5289.992621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 S -0.259 6.259 4 C -0.069 4.069 5 H 0.102 0.898 6 C -0.106 4.106 7 C -0.148 4.148 8 C 0.140 3.860 9 O -0.547 6.547 10 C 0.055 3.945 11 N -0.676 5.676 12 C 0.193 3.807 13 H 0.004 0.996 14 C -0.152 4.152 15 C -0.597 4.597 16 H 0.043 0.957 17 C -0.018 4.018 18 N -0.925 5.925 19 Si 1.113 2.887 20 H -0.289 1.289 21 H -0.274 1.274 22 H -0.273 1.273 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.392 0.608 33 H 0.057 0.943 34 H 0.016 0.984 35 H 0.323 0.677 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.038 0.962 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 -15.472 -1.275 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.235 4.235 3 S -0.032 6.032 4 C -0.198 4.198 5 H 0.121 0.879 6 C -0.145 4.145 7 C -0.186 4.186 8 C 0.097 3.903 9 O -0.356 6.356 10 C -0.075 4.075 11 N -0.309 5.309 12 C 0.086 3.914 13 H 0.022 0.978 14 C -0.211 4.211 15 C -0.636 4.636 16 H 0.061 0.939 17 C -0.219 4.219 18 N -0.562 5.562 19 Si 0.936 3.064 20 H -0.215 1.215 21 H -0.200 1.200 22 H -0.198 1.198 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.243 0.757 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.141 0.859 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.063 -13.904 0.514 13.954 hybrid contribution 0.988 -1.702 -2.275 3.008 sum -0.075 -15.606 -1.761 15.706 Atomic orbital electron populations 1.21514 0.91329 1.03763 1.02646 1.23463 1.00694 0.93533 1.05859 1.87370 1.02924 1.15156 1.97708 1.24374 0.93267 0.99951 1.02254 0.87941 1.23044 1.01618 0.95950 0.93930 1.23383 1.02302 0.97115 0.95816 1.21885 0.83115 0.91946 0.93329 1.86280 1.25365 1.37769 1.86163 1.22278 0.97072 0.90711 0.97474 1.61230 1.05449 1.04041 1.60159 1.19213 0.92812 0.90085 0.89290 0.97804 1.22247 1.01070 0.99393 0.98415 1.22108 1.25181 1.04134 1.12138 0.93877 1.27088 0.94413 1.06793 0.93632 1.70829 1.32436 1.14841 1.38060 0.82994 0.76308 0.71262 0.75874 1.21475 1.19987 1.19813 0.92268 0.92489 0.88522 0.89285 0.88820 0.88015 0.89576 0.91132 0.91013 0.75708 0.92418 0.96559 0.85894 0.93403 0.92941 0.94255 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.92 71.98 0.71 -1.56 16 2 C -0.09 -1.70 6.66 71.98 0.48 -1.22 16 3 S -0.26 -7.56 19.24 -56.49 -1.09 -8.65 16 4 C -0.07 -1.97 4.17 31.12 0.13 -1.84 16 5 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 6 C -0.11 -2.73 7.62 31.12 0.24 -2.49 16 7 C -0.15 -4.92 7.20 31.12 0.22 -4.70 16 8 C 0.14 4.68 1.50 -10.26 -0.02 4.66 16 9 O -0.55 -17.17 13.37 -148.98 -1.99 -19.16 16 10 C 0.06 2.21 4.32 86.30 0.37 2.58 16 11 N -0.68 -30.08 6.16 -495.43 -3.05 -33.13 16 12 C 0.19 9.70 2.14 44.17 0.09 9.79 16 13 H 0.00 0.22 6.60 -2.39 -0.02 0.20 16 14 C -0.15 -6.42 9.16 71.98 0.66 -5.76 16 15 C -0.60 -33.26 8.64 25.60 0.22 -33.04 16 16 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 17 C -0.02 -1.05 5.45 84.65 0.46 -0.58 16 18 N -0.93 -57.06 13.63 21.45 0.29 -56.77 16 19 Si 1.11 50.68 29.91 68.60 2.05 52.74 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.09 2.00 8.10 -2.39 -0.02 1.99 16 30 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.07 2.76 8.00 -2.39 -0.02 2.74 16 32 H 0.39 11.17 7.28 -74.06 -0.54 10.63 16 33 H 0.06 2.63 6.73 -2.39 -0.02 2.62 16 34 H 0.02 0.66 7.36 -2.39 -0.02 0.65 16 35 H 0.32 12.92 6.77 -89.70 -0.61 12.31 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 1.51 7.36 -2.39 -0.02 1.49 16 39 H 0.26 16.39 6.78 -92.71 -0.63 15.77 16 Total: -1.00 -65.03 324.64 -0.18 -65.21 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.02 Total: 33.91 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.58 Total: -34.15 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -2.76 Total: -89.90 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -1.99 Total: -19.16 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.74 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.09 Total: -8.65 kcal Total: -65.03 -0.18 -65.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379971359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.959 kcal (2) G-P(sol) polarization free energy of solvation -65.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds