Wall clock time and date at job start Mon Mar 30 2020 05:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42097 * 109.47122 * 2 1 4 4 C 1.81393 * 102.99897 * 116.39084 * 2 1 3 5 5 C 1.52999 * 115.55066 * 294.32065 * 4 2 1 6 6 N 1.46900 * 109.47206 * 270.95217 * 5 4 2 7 7 C 1.46898 * 110.99944 * 174.47490 * 6 5 4 8 8 C 1.53004 * 109.47285 * 180.02562 * 7 6 5 9 9 C 1.52990 * 109.47373 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47115 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46902 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00295 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99701 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99806 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99625 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47449 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47295 * 119.99805 * 15 13 11 18 18 H 1.48504 * 109.46776 * 239.99520 * 15 13 11 19 19 C 1.53001 * 117.50147 * 79.99237 * 4 2 1 20 20 C 1.53003 * 117.50144 * 148.65116 * 4 2 1 21 21 H 1.08999 * 109.47116 * 299.31773 * 1 2 3 22 22 H 1.09001 * 109.46835 * 59.30758 * 1 2 3 23 23 H 1.08995 * 109.47538 * 179.30830 * 1 2 3 24 24 H 1.09005 * 109.47184 * 150.95310 * 5 4 2 25 25 H 1.09006 * 109.46932 * 30.95182 * 5 4 2 26 26 H 1.00892 * 111.00062 * 298.43472 * 6 5 4 27 27 H 1.08995 * 109.47420 * 300.00227 * 7 6 5 28 28 H 1.09006 * 109.46968 * 60.00549 * 7 6 5 29 29 H 1.09000 * 109.46837 * 300.01120 * 8 7 6 30 30 H 1.09006 * 109.46706 * 60.00344 * 8 7 6 31 31 H 1.09002 * 109.47492 * 299.99848 * 9 8 7 32 32 H 1.09004 * 109.47628 * 60.00262 * 9 8 7 33 33 H 1.08995 * 109.46945 * 299.99945 * 10 9 8 34 34 H 1.08997 * 109.47120 * 60.00174 * 10 9 8 35 35 H 0.97001 * 119.99332 * 180.02562 * 14 13 11 36 36 H 1.09000 * 117.50053 * 215.00256 * 19 4 2 37 37 H 1.08999 * 117.49827 * 0.02562 * 19 4 2 38 38 H 1.09005 * 117.49311 * 359.97438 * 20 4 2 39 39 H 1.08997 * 117.50221 * 144.97019 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2220 -0.7856 1.5832 5 6 1.8166 -0.0015 2.8329 6 7 2.9077 0.9032 3.2188 7 6 2.5049 1.7669 4.3367 8 6 3.6643 2.6933 4.7089 9 6 3.2451 3.5924 5.8736 10 6 4.4043 4.5192 6.2454 11 6 3.9915 5.4044 7.3931 12 1 3.0013 5.3152 7.8148 13 6 4.8778 6.3289 7.9040 14 7 6.0834 6.4378 7.3901 15 14 4.3658 7.4266 9.3260 16 1 2.9693 7.1090 9.7188 17 1 5.2702 7.1947 10.4809 18 1 4.4508 8.8492 8.9086 19 6 2.1512 -2.3124 1.6534 20 6 3.5103 -1.6082 1.6526 21 1 -0.3633 0.5032 0.8960 22 1 -0.3633 0.5246 -0.8837 23 1 -0.3634 -1.0275 -0.0124 24 1 1.6150 -0.6962 3.6483 25 1 0.9195 0.5806 2.6214 26 1 3.7437 0.3856 3.4447 27 1 1.6429 2.3650 4.0414 28 1 2.2420 1.1500 5.1960 29 1 4.5267 2.0954 5.0039 30 1 3.9268 3.3102 3.8494 31 1 2.3826 4.1903 5.5789 32 1 2.9828 2.9753 6.7330 33 1 5.2670 3.9217 6.5400 34 1 4.6661 5.1363 5.3860 35 1 6.7070 7.0879 7.7498 36 1 1.8156 -2.7582 2.5897 37 1 1.8598 -2.8448 0.7480 38 1 4.1124 -1.6776 0.7465 39 1 4.0691 -1.5904 2.5882 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380242745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:16 Heat of formation + Delta-G solvation = -29.453278 kcal Electronic energy + Delta-G solvation = -16940.274372 eV Core-core repulsion = 14202.816462 eV Total energy + Delta-G solvation = -2737.457910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.31896 -36.02839 -35.60297 -33.79482 -31.96871 -29.26028 -28.65030 -26.08442 -23.90651 -22.76692 -21.31420 -21.13125 -19.91881 -17.47400 -16.76875 -16.15202 -15.48909 -15.35711 -14.86899 -14.50374 -14.33420 -14.21755 -13.82224 -13.57891 -12.92184 -12.50082 -12.29521 -12.29130 -12.12910 -11.91017 -11.56189 -11.44254 -10.98917 -10.92401 -10.65574 -10.52513 -10.39343 -10.36671 -10.02143 -9.58229 -9.21527 -8.95152 -8.51410 -8.29407 -8.22325 -5.94048 -3.96137 1.45937 2.42947 3.17499 3.34153 3.41060 3.45712 3.83864 4.17392 4.38600 4.50691 4.56928 4.77364 4.92467 5.03147 5.23787 5.24041 5.29474 5.41223 5.45365 5.49879 5.52875 5.60875 5.72686 5.74141 5.94033 6.20591 6.29155 6.56382 6.88358 7.00891 7.08614 7.27683 7.45518 7.75721 7.92034 8.07515 8.50276 9.11527 9.67370 11.17427 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.040377 B = 0.003005 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.300317 B = 9314.576271 C = 9466.094941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.494 4.494 2 S 1.282 4.718 3 O -0.824 6.824 4 C -0.456 4.456 5 C 0.105 3.895 6 N -0.682 5.682 7 C 0.061 3.939 8 C -0.114 4.114 9 C -0.108 4.108 10 C 0.021 3.979 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.130 4.130 20 C -0.123 4.123 21 H 0.081 0.919 22 H 0.100 0.900 23 H 0.109 0.891 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.339 0.661 27 H 0.066 0.934 28 H 0.024 0.976 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.723 -22.817 -16.843 29.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 1.477 4.523 3 O -0.819 6.819 4 C -0.553 4.553 5 C -0.025 4.025 6 N -0.313 5.313 7 C -0.067 4.067 8 C -0.152 4.152 9 C -0.146 4.146 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.169 4.169 20 C -0.161 4.161 21 H 0.100 0.900 22 H 0.119 0.881 23 H 0.128 0.872 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.157 0.843 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.123 -21.860 -17.974 29.735 hybrid contribution -1.152 1.261 3.417 3.820 sum -10.276 -20.600 -14.558 27.237 Atomic orbital electron populations 1.27688 1.22747 1.07726 1.06945 1.70107 0.86195 0.99481 0.96466 1.93206 1.72650 1.36212 1.79861 1.29143 1.10588 1.00490 1.15057 1.21280 0.94511 0.93329 0.93370 1.60379 1.05877 1.24080 1.40992 1.22058 0.99493 0.94935 0.90250 1.21624 0.96354 0.97584 0.99676 1.21588 1.00561 0.97321 0.95177 1.19097 0.92643 0.93625 0.96271 1.21332 0.99300 1.18665 1.16453 0.92754 1.25046 0.95022 0.97399 0.97148 1.69986 1.05838 1.35841 1.41865 0.86546 0.78592 0.80526 0.82394 1.19796 1.21035 1.21006 1.22831 1.00475 0.89671 1.03947 1.22639 0.89465 0.99945 1.04098 0.90014 0.88080 0.87193 0.95285 0.91744 0.84285 0.91567 0.95801 0.92791 0.91508 0.93513 0.93754 0.96724 0.96547 0.93114 0.88532 0.87268 0.87592 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.40 10.64 101.05 1.08 -2.33 16 2 S 1.28 10.44 13.66 -107.50 -1.47 8.97 16 3 O -0.82 -13.38 18.14 -35.23 -0.64 -14.02 16 4 C -0.46 -3.82 2.21 -90.62 -0.20 -4.02 16 5 C 0.11 1.24 5.73 -3.82 -0.02 1.22 16 6 N -0.68 -10.10 6.45 -113.77 -0.73 -10.83 16 7 C 0.06 1.01 5.68 -3.82 -0.02 0.99 16 8 C -0.11 -2.21 5.47 -26.73 -0.15 -2.36 16 9 C -0.11 -2.43 5.15 -26.73 -0.14 -2.57 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -15.56 9.11 -34.44 -0.31 -15.87 16 12 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16 13 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -28.13 13.29 55.43 0.74 -27.39 16 15 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 19 C -0.13 -0.63 9.94 -26.69 -0.27 -0.89 16 20 C -0.12 -0.82 9.58 -26.69 -0.26 -1.07 16 21 H 0.08 0.74 7.23 -51.92 -0.38 0.36 16 22 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 23 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.03 0.32 7.88 -51.93 -0.41 -0.09 16 25 H 0.06 0.82 7.04 -51.93 -0.37 0.45 16 26 H 0.34 4.59 7.74 -39.30 -0.30 4.28 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.10 0.49 8.04 -51.93 -0.42 0.07 16 37 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.72 7.52 -51.93 -0.39 0.33 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -38.48 335.55 -9.47 -47.95 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.88 Total: -2.30 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -0.52 Total: -24.92 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.00 Total: -38.23 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.64 Total: -14.02 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 10.44 SS G_CDS: -1.47 Total: 8.97 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -38.48 -9.47 -47.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380242745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.492 kcal (2) G-P(sol) polarization free energy of solvation -38.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds