Wall clock time and date at job start Mon Mar 30 2020 05:15:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81403 * 1
3 3 O 1.42097 * 109.47122 * 2 1
4 4 C 1.81393 * 102.99897 * 116.39084 * 2 1 3
5 5 C 1.52999 * 115.55066 * 294.32065 * 4 2 1
6 6 N 1.46900 * 109.47206 * 270.95217 * 5 4 2
7 7 C 1.46898 * 110.99944 * 174.47490 * 6 5 4
8 8 C 1.53004 * 109.47285 * 180.02562 * 7 6 5
9 9 C 1.52990 * 109.47373 * 180.02562 * 8 7 6
10 10 C 1.53006 * 109.47115 * 180.02562 * 9 8 7
11 11 C 1.50702 * 109.46902 * 180.02562 * 10 9 8
12 12 H 1.07997 * 120.00295 * 359.97438 * 11 10 9
13 13 C 1.37884 * 119.99701 * 180.02562 * 11 10 9
14 14 N 1.31514 * 119.99806 * 359.97438 * 13 11 10
15 15 Si 1.86794 * 119.99625 * 179.97438 * 13 11 10
16 16 H 1.48498 * 109.47449 * 359.97438 * 15 13 11
17 17 H 1.48503 * 109.47295 * 119.99805 * 15 13 11
18 18 H 1.48504 * 109.46776 * 239.99520 * 15 13 11
19 19 C 1.53001 * 117.50147 * 79.99237 * 4 2 1
20 20 C 1.53003 * 117.50144 * 148.65116 * 4 2 1
21 21 H 1.08999 * 109.47116 * 299.31773 * 1 2 3
22 22 H 1.09001 * 109.46835 * 59.30758 * 1 2 3
23 23 H 1.08995 * 109.47538 * 179.30830 * 1 2 3
24 24 H 1.09005 * 109.47184 * 150.95310 * 5 4 2
25 25 H 1.09006 * 109.46932 * 30.95182 * 5 4 2
26 26 H 1.00892 * 111.00062 * 298.43472 * 6 5 4
27 27 H 1.08995 * 109.47420 * 300.00227 * 7 6 5
28 28 H 1.09006 * 109.46968 * 60.00549 * 7 6 5
29 29 H 1.09000 * 109.46837 * 300.01120 * 8 7 6
30 30 H 1.09006 * 109.46706 * 60.00344 * 8 7 6
31 31 H 1.09002 * 109.47492 * 299.99848 * 9 8 7
32 32 H 1.09004 * 109.47628 * 60.00262 * 9 8 7
33 33 H 1.08995 * 109.46945 * 299.99945 * 10 9 8
34 34 H 1.08997 * 109.47120 * 60.00174 * 10 9 8
35 35 H 0.97001 * 119.99332 * 180.02562 * 14 13 11
36 36 H 1.09000 * 117.50053 * 215.00256 * 19 4 2
37 37 H 1.08999 * 117.49827 * 0.02562 * 19 4 2
38 38 H 1.09005 * 117.49311 * 359.97438 * 20 4 2
39 39 H 1.08997 * 117.50221 * 144.97019 * 20 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.2877 1.3397 0.0000
4 6 2.2220 -0.7856 1.5832
5 6 1.8166 -0.0015 2.8329
6 7 2.9077 0.9032 3.2188
7 6 2.5049 1.7669 4.3367
8 6 3.6643 2.6933 4.7089
9 6 3.2451 3.5924 5.8736
10 6 4.4043 4.5192 6.2454
11 6 3.9915 5.4044 7.3931
12 1 3.0013 5.3152 7.8148
13 6 4.8778 6.3289 7.9040
14 7 6.0834 6.4378 7.3901
15 14 4.3658 7.4266 9.3260
16 1 2.9693 7.1090 9.7188
17 1 5.2702 7.1947 10.4809
18 1 4.4508 8.8492 8.9086
19 6 2.1512 -2.3124 1.6534
20 6 3.5103 -1.6082 1.6526
21 1 -0.3633 0.5032 0.8960
22 1 -0.3633 0.5246 -0.8837
23 1 -0.3634 -1.0275 -0.0124
24 1 1.6150 -0.6962 3.6483
25 1 0.9195 0.5806 2.6214
26 1 3.7437 0.3856 3.4447
27 1 1.6429 2.3650 4.0414
28 1 2.2420 1.1500 5.1960
29 1 4.5267 2.0954 5.0039
30 1 3.9268 3.3102 3.8494
31 1 2.3826 4.1903 5.5789
32 1 2.9828 2.9753 6.7330
33 1 5.2670 3.9217 6.5400
34 1 4.6661 5.1363 5.3860
35 1 6.7070 7.0879 7.7498
36 1 1.8156 -2.7582 2.5897
37 1 1.8598 -2.8448 0.7480
38 1 4.1124 -1.6776 0.7465
39 1 4.0691 -1.5904 2.5882
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000380242745.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:15:16
Heat of formation + Delta-G solvation = -29.453278 kcal
Electronic energy + Delta-G solvation = -16940.274372 eV
Core-core repulsion = 14202.816462 eV
Total energy + Delta-G solvation = -2737.457910 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-38.31896 -36.02839 -35.60297 -33.79482 -31.96871 -29.26028 -28.65030 -26.08442
-23.90651 -22.76692 -21.31420 -21.13125 -19.91881 -17.47400 -16.76875 -16.15202
-15.48909 -15.35711 -14.86899 -14.50374 -14.33420 -14.21755 -13.82224 -13.57891
-12.92184 -12.50082 -12.29521 -12.29130 -12.12910 -11.91017 -11.56189 -11.44254
-10.98917 -10.92401 -10.65574 -10.52513 -10.39343 -10.36671 -10.02143 -9.58229
-9.21527 -8.95152 -8.51410 -8.29407 -8.22325 -5.94048 -3.96137 1.45937
2.42947 3.17499 3.34153 3.41060 3.45712 3.83864 4.17392 4.38600
4.50691 4.56928 4.77364 4.92467 5.03147 5.23787 5.24041 5.29474
5.41223 5.45365 5.49879 5.52875 5.60875 5.72686 5.74141 5.94033
6.20591 6.29155 6.56382 6.88358 7.00891 7.08614 7.27683 7.45518
7.75721 7.92034 8.07515 8.50276 9.11527 9.67370 11.17427
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.040377 B = 0.003005 C = 0.002957
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.300317 B = 9314.576271 C = 9466.094941
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.494 4.494
2 S 1.282 4.718
3 O -0.824 6.824
4 C -0.456 4.456
5 C 0.105 3.895
6 N -0.682 5.682
7 C 0.061 3.939
8 C -0.114 4.114
9 C -0.108 4.108
10 C 0.021 3.979
11 C -0.519 4.519
12 H 0.054 0.946
13 C 0.055 3.945
14 N -0.896 5.896
15 Si 0.891 3.109
16 H -0.273 1.273
17 H -0.284 1.284
18 H -0.284 1.284
19 C -0.130 4.130
20 C -0.123 4.123
21 H 0.081 0.919
22 H 0.100 0.900
23 H 0.109 0.891
24 H 0.029 0.971
25 H 0.064 0.936
26 H 0.339 0.661
27 H 0.066 0.934
28 H 0.024 0.976
29 H 0.053 0.947
30 H 0.066 0.934
31 H 0.046 0.954
32 H 0.044 0.956
33 H 0.014 0.986
34 H 0.016 0.984
35 H 0.259 0.741
36 H 0.096 0.904
37 H 0.109 0.891
38 H 0.106 0.894
39 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.723 -22.817 -16.843 29.980
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.651 4.651
2 S 1.477 4.523
3 O -0.819 6.819
4 C -0.553 4.553
5 C -0.025 4.025
6 N -0.313 5.313
7 C -0.067 4.067
8 C -0.152 4.152
9 C -0.146 4.146
10 C -0.016 4.016
11 C -0.557 4.557
12 H 0.072 0.928
13 C -0.146 4.146
14 N -0.535 5.535
15 Si 0.719 3.281
16 H -0.198 1.198
17 H -0.210 1.210
18 H -0.210 1.210
19 C -0.169 4.169
20 C -0.161 4.161
21 H 0.100 0.900
22 H 0.119 0.881
23 H 0.128 0.872
24 H 0.047 0.953
25 H 0.083 0.917
26 H 0.157 0.843
27 H 0.084 0.916
28 H 0.042 0.958
29 H 0.072 0.928
30 H 0.085 0.915
31 H 0.065 0.935
32 H 0.062 0.938
33 H 0.033 0.967
34 H 0.035 0.965
35 H 0.069 0.931
36 H 0.115 0.885
37 H 0.127 0.873
38 H 0.124 0.876
39 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -9.123 -21.860 -17.974 29.735
hybrid contribution -1.152 1.261 3.417 3.820
sum -10.276 -20.600 -14.558 27.237
Atomic orbital electron populations
1.27688 1.22747 1.07726 1.06945 1.70107 0.86195 0.99481 0.96466
1.93206 1.72650 1.36212 1.79861 1.29143 1.10588 1.00490 1.15057
1.21280 0.94511 0.93329 0.93370 1.60379 1.05877 1.24080 1.40992
1.22058 0.99493 0.94935 0.90250 1.21624 0.96354 0.97584 0.99676
1.21588 1.00561 0.97321 0.95177 1.19097 0.92643 0.93625 0.96271
1.21332 0.99300 1.18665 1.16453 0.92754 1.25046 0.95022 0.97399
0.97148 1.69986 1.05838 1.35841 1.41865 0.86546 0.78592 0.80526
0.82394 1.19796 1.21035 1.21006 1.22831 1.00475 0.89671 1.03947
1.22639 0.89465 0.99945 1.04098 0.90014 0.88080 0.87193 0.95285
0.91744 0.84285 0.91567 0.95801 0.92791 0.91508 0.93513 0.93754
0.96724 0.96547 0.93114 0.88532 0.87268 0.87592 0.88435
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.49 -3.40 10.64 101.05 1.08 -2.33 16
2 S 1.28 10.44 13.66 -107.50 -1.47 8.97 16
3 O -0.82 -13.38 18.14 -35.23 -0.64 -14.02 16
4 C -0.46 -3.82 2.21 -90.62 -0.20 -4.02 16
5 C 0.11 1.24 5.73 -3.82 -0.02 1.22 16
6 N -0.68 -10.10 6.45 -113.77 -0.73 -10.83 16
7 C 0.06 1.01 5.68 -3.82 -0.02 0.99 16
8 C -0.11 -2.21 5.47 -26.73 -0.15 -2.36 16
9 C -0.11 -2.43 5.15 -26.73 -0.14 -2.57 16
10 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16
11 C -0.52 -15.56 9.11 -34.44 -0.31 -15.87 16
12 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16
13 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16
14 N -0.90 -28.13 13.29 55.43 0.74 -27.39 16
15 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16
16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16
17 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16
18 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16
19 C -0.13 -0.63 9.94 -26.69 -0.27 -0.89 16
20 C -0.12 -0.82 9.58 -26.69 -0.26 -1.07 16
21 H 0.08 0.74 7.23 -51.92 -0.38 0.36 16
22 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16
23 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16
24 H 0.03 0.32 7.88 -51.93 -0.41 -0.09 16
25 H 0.06 0.82 7.04 -51.93 -0.37 0.45 16
26 H 0.34 4.59 7.74 -39.30 -0.30 4.28 16
27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
30 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16
31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16
33 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16
34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
36 H 0.10 0.49 8.04 -51.93 -0.42 0.07 16
37 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16
38 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.10 0.72 7.52 -51.93 -0.39 0.33 16
LS Contribution 335.55 15.07 5.06 5.06
Total: -1.00 -38.48 335.55 -9.47 -47.95
By element:
Atomic # 1 Polarization: 4.57 SS G_CDS: -6.88 Total: -2.30 kcal
Atomic # 6 Polarization: -24.40 SS G_CDS: -0.52 Total: -24.92 kcal
Atomic # 7 Polarization: -38.23 SS G_CDS: 0.00 Total: -38.23 kcal
Atomic # 8 Polarization: -13.38 SS G_CDS: -0.64 Total: -14.02 kcal
Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal
Atomic # 16 Polarization: 10.44 SS G_CDS: -1.47 Total: 8.97 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -38.48 -9.47 -47.95 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380242745.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.492 kcal
(2) G-P(sol) polarization free energy of solvation -38.476 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.984 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.453 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds