Wall clock time and date at job start Mon Mar 30 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 114.00027 * 2 1 4 4 C 1.53004 * 110.45382 * 302.51191 * 3 2 1 5 5 N 1.46894 * 109.47402 * 301.46982 * 4 3 2 6 6 C 1.46897 * 111.00012 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46791 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47002 * 65.00414 * 7 6 5 9 9 C 1.42905 * 113.99720 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46525 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00532 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99459 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99953 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99799 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47017 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47131 * 119.99983 * 14 12 10 17 17 H 1.48499 * 109.47191 * 239.99907 * 14 12 10 18 18 C 1.54512 * 110.51241 * 65.11740 * 3 2 1 19 19 C 1.54476 * 104.06038 * 118.78143 * 18 3 2 20 20 O 1.44430 * 104.80615 * 23.98020 * 19 18 3 21 21 C 1.44789 * 105.29227 * 319.45132 * 20 19 18 22 22 H 1.09003 * 109.46852 * 305.98834 * 1 2 3 23 23 H 1.08999 * 109.46973 * 65.98300 * 1 2 3 24 24 H 1.08992 * 109.46951 * 185.98655 * 1 2 3 25 25 H 1.09000 * 109.46612 * 181.46356 * 4 3 2 26 26 H 1.08998 * 109.46904 * 61.47118 * 4 3 2 27 27 H 1.00905 * 110.99618 * 303.95624 * 5 4 3 28 28 H 1.08996 * 109.47086 * 60.00272 * 6 5 4 29 29 H 1.08998 * 109.47294 * 299.99848 * 6 5 4 30 30 H 1.08995 * 109.47281 * 305.00045 * 7 6 5 31 31 H 1.09006 * 109.46796 * 184.99608 * 7 6 5 32 32 H 1.08996 * 109.47021 * 59.99559 * 9 8 7 33 33 H 1.08998 * 109.46752 * 299.99247 * 9 8 7 34 34 H 0.97006 * 119.99423 * 179.97438 * 13 12 10 35 35 H 1.09002 * 110.50888 * 237.42373 * 18 3 2 36 36 H 1.09001 * 110.50842 * 359.97438 * 18 3 2 37 37 H 1.09003 * 110.37260 * 142.80753 * 19 18 3 38 38 H 1.08997 * 110.37651 * 265.03815 * 19 18 3 39 39 H 1.08995 * 110.42548 * 281.77893 * 21 20 19 40 40 H 1.09001 * 110.48791 * 159.32379 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5239 2.1073 -1.2089 5 7 1.8786 1.3952 -2.4438 6 6 1.4267 2.1377 -3.6280 7 6 1.8139 1.3668 -4.8916 8 8 1.1043 0.1269 -4.9294 9 6 1.3949 -0.6743 -6.0764 10 6 0.5966 -1.9509 -6.0125 11 1 -0.0659 -2.1325 -5.1793 12 6 0.7121 -2.8872 -7.0181 13 7 1.5185 -2.6659 -8.0331 14 14 -0.2768 -4.4700 -6.9387 15 1 -1.1027 -4.4762 -5.7045 16 1 -1.1628 -4.5603 -8.1270 17 1 0.6484 -5.6314 -6.9216 18 6 1.6743 2.0478 1.3128 19 6 3.0531 2.3175 1.9550 20 8 3.9838 2.3025 0.8506 21 6 3.5522 1.2114 0.0023 22 1 -0.3633 0.6039 0.8316 23 1 -0.3633 0.4183 -0.9387 24 1 -0.3633 -1.0220 0.1072 25 1 1.9964 3.0896 -1.2073 26 1 0.4416 2.2248 -1.1553 27 1 2.8708 1.2169 -2.4860 28 1 1.8990 3.1199 -3.6430 29 1 0.3437 2.2558 -3.5914 30 1 2.8862 1.1717 -4.8840 31 1 1.5583 1.9585 -5.7708 32 1 2.4585 -0.9117 -6.0938 33 1 1.1303 -0.1248 -6.9798 34 1 1.6001 -3.3248 -8.7404 35 1 1.1617 2.9860 1.1006 36 1 1.0644 1.4191 1.9616 37 1 3.0600 3.2918 2.4437 38 1 3.2984 1.5329 2.6707 39 1 3.8735 0.2564 0.4179 40 1 3.9415 1.3368 -1.0081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385354088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:43 Heat of formation + Delta-G solvation = -131.775431 kcal Electronic energy + Delta-G solvation = -20062.108291 eV Core-core repulsion = 16877.460489 eV Total energy + Delta-G solvation = -3184.647802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32925 -37.37476 -36.89354 -35.15441 -32.65716 -31.65692 -30.04326 -28.42553 -26.87390 -26.20877 -24.78276 -22.72108 -22.23264 -21.43233 -20.14272 -17.45853 -16.77523 -16.29802 -15.84075 -15.69081 -15.42509 -15.05018 -14.98213 -14.56526 -14.21147 -13.89754 -13.66556 -13.35648 -13.09067 -12.65063 -12.43108 -12.04497 -11.94212 -11.61603 -11.49182 -11.38400 -11.18039 -10.76456 -10.72691 -10.66479 -10.43726 -9.99366 -9.95927 -9.50030 -9.01700 -8.75606 -8.19460 -8.07870 -6.05165 -4.05692 3.33294 3.39490 3.46705 3.49028 3.77950 4.17965 4.35611 4.40361 4.56000 4.62219 4.87464 4.95486 4.97452 5.24656 5.31553 5.33936 5.38095 5.40514 5.49882 5.53702 5.56833 5.59860 5.66305 5.71992 5.80467 5.94912 6.02909 6.11349 6.30760 6.40205 7.09015 7.16981 7.23974 7.49891 7.53262 7.87246 8.23175 8.67895 9.09378 9.58985 11.06672 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027628 B = 0.004070 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.230121 B = 6878.271110 C = 7353.633768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.089 3.911 4 C 0.041 3.959 5 N -0.666 5.666 6 C 0.065 3.935 7 C 0.065 3.935 8 O -0.379 6.379 9 C 0.193 3.807 10 C -0.508 4.508 11 H 0.067 0.933 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.182 4.182 19 C 0.048 3.952 20 O -0.372 6.372 21 C 0.059 3.941 22 H 0.033 0.967 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.339 0.661 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.003 0.997 33 H 0.002 0.998 34 H 0.262 0.738 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 11.761 18.273 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.049 3.951 4 C -0.088 4.088 5 N -0.299 5.299 6 C -0.064 4.064 7 C -0.013 4.013 8 O -0.299 6.299 9 C 0.119 3.881 10 C -0.547 4.547 11 H 0.085 0.915 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.220 4.220 19 C -0.029 4.029 20 O -0.291 6.291 21 C -0.018 4.018 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.104 0.896 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.158 0.842 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.793 11.184 18.217 21.391 hybrid contribution -0.051 0.075 -0.368 0.379 sum 0.742 11.260 17.849 21.117 Atomic orbital electron populations 1.22754 0.80823 1.02606 1.00231 1.87969 1.20049 1.24754 1.94648 1.22819 0.94447 0.84718 0.93152 1.22476 1.01404 0.94835 0.90122 1.60277 1.21632 1.47853 1.00117 1.21996 1.01289 0.93412 0.89664 1.22216 0.95595 0.88354 0.95114 1.87961 1.66088 1.28769 1.47066 1.20188 0.95701 0.89604 0.82615 1.21106 1.24984 1.01330 1.07256 0.91464 1.24949 0.95809 0.98796 0.95054 1.69979 1.37639 1.35802 1.10627 0.86298 0.79739 0.82497 0.78063 1.19459 1.20952 1.20875 1.23555 0.98977 1.01830 0.97647 1.23334 0.87336 1.02248 0.89969 1.89222 1.51877 1.52157 1.35831 1.23372 0.91061 0.91308 0.96104 0.94825 0.92669 0.89648 0.94339 0.90435 0.84153 0.94874 0.90486 0.94764 0.94181 0.97883 0.98050 0.92821 0.90079 0.89353 0.89011 0.91919 0.90465 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.17 101.05 1.03 1.42 16 2 O -0.36 -4.98 10.22 -35.23 -0.36 -5.34 16 3 C 0.09 1.04 0.85 -89.05 -0.08 0.97 16 4 C 0.04 0.50 4.02 -3.82 -0.02 0.48 16 5 N -0.67 -9.95 6.32 -113.78 -0.72 -10.67 16 6 C 0.07 0.98 6.07 -3.82 -0.02 0.96 16 7 C 0.07 1.23 6.22 37.16 0.23 1.46 16 8 O -0.38 -9.41 10.27 -35.23 -0.36 -9.78 16 9 C 0.19 5.45 5.69 36.01 0.20 5.65 16 10 C -0.51 -15.36 9.43 -34.44 -0.32 -15.69 16 11 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 14 Si 0.91 22.29 29.54 -169.99 -5.02 17.26 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 C -0.18 -1.63 5.88 -25.16 -0.15 -1.78 16 19 C 0.05 0.42 7.63 37.93 0.29 0.71 16 20 O -0.37 -4.33 11.66 -35.23 -0.41 -4.74 16 21 C 0.06 0.68 6.82 37.93 0.26 0.94 16 22 H 0.03 0.32 6.62 -51.93 -0.34 -0.03 16 23 H 0.05 0.74 6.83 -51.93 -0.35 0.39 16 24 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.92 6.83 -51.93 -0.35 0.57 16 27 H 0.34 4.87 6.84 -39.29 -0.27 4.60 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 0.64 7.73 -51.93 -0.40 0.24 16 36 H 0.09 0.73 6.91 -51.93 -0.36 0.38 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.10 1.13 6.19 -51.93 -0.32 0.81 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -33.31 324.44 -6.51 -39.82 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.60 Total: -1.37 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 1.33 Total: -3.36 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.02 Total: -37.39 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -1.13 Total: -19.85 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.31 -6.51 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385354088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.951 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds