Wall clock time and date at job start Mon Mar 30 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 114.00027 * 2 1 4 4 C 1.53004 * 110.45382 * 302.51191 * 3 2 1 5 5 N 1.46894 * 109.47402 * 301.46982 * 4 3 2 6 6 C 1.46897 * 111.00012 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46791 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47002 * 65.00414 * 7 6 5 9 9 C 1.42905 * 113.99720 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46525 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00532 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99459 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99953 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99799 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47017 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47131 * 119.99983 * 14 12 10 17 17 H 1.48499 * 109.47191 * 239.99907 * 14 12 10 18 18 C 1.54512 * 110.51241 * 65.11740 * 3 2 1 19 19 C 1.54476 * 104.06038 * 118.78143 * 18 3 2 20 20 O 1.44430 * 104.80615 * 23.98020 * 19 18 3 21 21 C 1.44789 * 105.29227 * 319.45132 * 20 19 18 22 22 H 1.09003 * 109.46852 * 305.98834 * 1 2 3 23 23 H 1.08999 * 109.46973 * 65.98300 * 1 2 3 24 24 H 1.08992 * 109.46951 * 185.98655 * 1 2 3 25 25 H 1.09000 * 109.46612 * 181.46356 * 4 3 2 26 26 H 1.08998 * 109.46904 * 61.47118 * 4 3 2 27 27 H 1.00905 * 110.99618 * 303.95624 * 5 4 3 28 28 H 1.08996 * 109.47086 * 60.00272 * 6 5 4 29 29 H 1.08998 * 109.47294 * 299.99848 * 6 5 4 30 30 H 1.08995 * 109.47281 * 305.00045 * 7 6 5 31 31 H 1.09006 * 109.46796 * 184.99608 * 7 6 5 32 32 H 1.08996 * 109.47021 * 59.99559 * 9 8 7 33 33 H 1.08998 * 109.46752 * 299.99247 * 9 8 7 34 34 H 0.97006 * 119.99423 * 179.97438 * 13 12 10 35 35 H 1.09002 * 110.50888 * 237.42373 * 18 3 2 36 36 H 1.09001 * 110.50842 * 359.97438 * 18 3 2 37 37 H 1.09003 * 110.37260 * 142.80753 * 19 18 3 38 38 H 1.08997 * 110.37651 * 265.03815 * 19 18 3 39 39 H 1.08995 * 110.42548 * 281.77893 * 21 20 19 40 40 H 1.09001 * 110.48791 * 159.32379 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5239 2.1073 -1.2089 5 7 1.8786 1.3952 -2.4438 6 6 1.4267 2.1377 -3.6280 7 6 1.8139 1.3668 -4.8916 8 8 1.1043 0.1269 -4.9294 9 6 1.3949 -0.6743 -6.0764 10 6 0.5966 -1.9509 -6.0125 11 1 -0.0659 -2.1325 -5.1793 12 6 0.7121 -2.8872 -7.0181 13 7 1.5185 -2.6659 -8.0331 14 14 -0.2768 -4.4700 -6.9387 15 1 -1.1027 -4.4762 -5.7045 16 1 -1.1628 -4.5603 -8.1270 17 1 0.6484 -5.6314 -6.9216 18 6 1.6743 2.0478 1.3128 19 6 3.0531 2.3175 1.9550 20 8 3.9838 2.3025 0.8506 21 6 3.5522 1.2114 0.0023 22 1 -0.3633 0.6039 0.8316 23 1 -0.3633 0.4183 -0.9387 24 1 -0.3633 -1.0220 0.1072 25 1 1.9964 3.0896 -1.2073 26 1 0.4416 2.2248 -1.1553 27 1 2.8708 1.2169 -2.4860 28 1 1.8990 3.1199 -3.6430 29 1 0.3437 2.2558 -3.5914 30 1 2.8862 1.1717 -4.8840 31 1 1.5583 1.9585 -5.7708 32 1 2.4585 -0.9117 -6.0938 33 1 1.1303 -0.1248 -6.9798 34 1 1.6001 -3.3248 -8.7404 35 1 1.1617 2.9860 1.1006 36 1 1.0644 1.4191 1.9616 37 1 3.0600 3.2918 2.4437 38 1 3.2984 1.5329 2.6707 39 1 3.8735 0.2564 0.4179 40 1 3.9415 1.3368 -1.0081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385354088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:42 Heat of formation + Delta-G solvation = -158.047699 kcal Electronic energy + Delta-G solvation = -20063.247542 eV Core-core repulsion = 16877.460489 eV Total energy + Delta-G solvation = -3185.787053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.19725 -38.79166 -38.11694 -36.50584 -34.85311 -32.62103 -31.09945 -29.77865 -28.67202 -27.27843 -25.82648 -24.47278 -23.55671 -22.71003 -21.04457 -18.67922 -18.32763 -17.65606 -17.40504 -16.86775 -16.54601 -16.47872 -16.15531 -15.88239 -15.47142 -15.22817 -14.98058 -14.75660 -14.20643 -13.88992 -13.63184 -13.37879 -13.26133 -12.96213 -12.75339 -12.67363 -12.46232 -12.42933 -12.23701 -12.17081 -11.76075 -11.48090 -11.23603 -10.86363 -10.81713 -10.46565 -10.18056 -9.27952 -8.31049 -6.42681 1.40087 1.41847 1.56766 2.36170 2.60121 2.95175 3.02709 3.18546 3.26781 3.54499 3.72438 3.77727 4.13013 4.18654 4.24561 4.24937 4.45244 4.48308 4.53803 4.57402 4.58048 4.65990 4.67640 4.79020 4.80993 4.83573 4.92994 4.97124 4.98533 5.00689 5.20160 5.56997 5.61004 5.98137 6.02824 6.27005 6.45369 6.58672 6.87656 7.29595 8.81663 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027628 B = 0.004070 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.230121 B = 6878.271110 C = 7353.633768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.084 3.916 4 C 0.047 3.953 5 N -0.690 5.690 6 C 0.076 3.924 7 C 0.055 3.945 8 O -0.395 6.395 9 C 0.208 3.792 10 C -0.544 4.544 11 H 0.059 0.941 12 C 0.006 3.994 13 N -0.932 5.932 14 Si 0.983 3.017 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.271 1.271 18 C -0.174 4.174 19 C 0.043 3.957 20 O -0.387 6.387 21 C 0.057 3.943 22 H 0.062 0.938 23 H 0.036 0.964 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.339 0.661 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.049 0.951 32 H -0.018 1.018 33 H -0.016 1.016 34 H 0.270 0.730 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 12.096 19.543 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.044 3.956 4 C -0.082 4.082 5 N -0.323 5.323 6 C -0.053 4.053 7 C -0.023 4.023 8 O -0.315 6.315 9 C 0.133 3.867 10 C -0.582 4.582 11 H 0.077 0.923 12 C -0.192 4.192 13 N -0.571 5.571 14 Si 0.806 3.194 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.197 1.197 18 C -0.212 4.212 19 C -0.033 4.033 20 O -0.306 6.306 21 C -0.020 4.020 22 H 0.080 0.920 23 H 0.055 0.945 24 H 0.103 0.897 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.159 0.841 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.000 1.000 33 H 0.002 0.998 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.061 11.550 19.503 22.666 hybrid contribution 0.239 0.055 -0.739 0.779 sum 0.300 11.605 18.763 22.064 Atomic orbital electron populations 1.22785 0.80152 1.03080 1.00391 1.87929 1.20960 1.26394 1.94852 1.22942 0.94178 0.84143 0.94343 1.22487 1.01601 0.95189 0.88956 1.60242 1.21819 1.49080 1.01142 1.21886 1.01349 0.94074 0.87947 1.22593 0.95449 0.86408 0.97833 1.87915 1.67176 1.30920 1.45497 1.19799 0.94054 0.89671 0.83154 1.21407 1.26018 1.02925 1.07840 0.92271 1.25957 0.96626 1.02496 0.94151 1.70079 1.38522 1.37330 1.11211 0.85143 0.78259 0.77457 0.78582 1.18912 1.19510 1.19654 1.23525 0.99357 1.02221 0.96101 1.23555 0.86578 1.03823 0.89342 1.89205 1.52833 1.51921 1.36656 1.23325 0.91364 0.91198 0.96079 0.91982 0.94526 0.89713 0.92905 0.90220 0.84123 0.91389 0.90835 0.94403 0.93297 1.00001 0.99814 0.92083 0.88586 0.88517 0.86782 0.91340 0.91138 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.17 113.37 1.15 1.90 16 2 O -0.38 -10.48 10.22 -148.98 -1.52 -12.00 16 3 C 0.08 1.86 0.85 -9.78 -0.01 1.85 16 4 C 0.05 1.06 4.02 86.31 0.35 1.41 16 5 N -0.69 -20.16 6.32 -513.90 -3.25 -23.41 16 6 C 0.08 2.21 6.07 86.31 0.52 2.73 16 7 C 0.05 2.05 6.22 71.98 0.45 2.50 16 8 O -0.40 -20.08 10.27 -148.98 -1.53 -21.61 16 9 C 0.21 12.14 5.69 71.24 0.41 12.54 16 10 C -0.54 -33.55 9.43 25.60 0.24 -33.31 16 11 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 12 C 0.01 0.35 5.46 84.66 0.46 0.81 16 13 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 14 Si 0.98 45.50 29.54 68.60 2.03 47.52 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 C -0.17 -2.68 5.88 31.61 0.19 -2.50 16 19 C 0.04 0.66 7.63 72.48 0.55 1.21 16 20 O -0.39 -8.44 11.66 -148.98 -1.74 -10.18 16 21 C 0.06 1.30 6.82 72.48 0.49 1.80 16 22 H 0.06 1.05 6.62 -2.39 -0.02 1.04 16 23 H 0.04 0.97 6.83 -2.39 -0.02 0.96 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.76 6.83 -2.39 -0.02 1.75 16 27 H 0.34 9.68 6.84 -89.69 -0.61 9.07 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 32 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 33 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 34 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 35 H 0.10 1.20 7.73 -2.39 -0.02 1.18 16 36 H 0.10 1.34 6.91 -2.39 -0.02 1.33 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.65 8.08 -2.39 -0.02 1.64 16 40 H 0.10 2.18 6.19 -2.39 -0.01 2.17 16 Total: -1.00 -71.81 324.44 -0.52 -72.33 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.40 Total: 13.31 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 4.81 Total: -9.06 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.96 Total: -80.31 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -4.79 Total: -43.79 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -71.81 -0.52 -72.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385354088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.717 kcal (2) G-P(sol) polarization free energy of solvation -71.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds