Wall clock time and date at job start Mon Mar 30 2020 05:06:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 S 1.81405 * 109.47080 * 2 1
4 4 C 1.81392 * 103.00140 * 179.97438 * 3 2 1
5 5 H 1.09000 * 110.64960 * 303.30312 * 4 3 2
6 6 C 1.54602 * 110.72414 * 66.45783 * 4 3 2
7 7 C 1.53994 * 105.14053 * 140.31468 * 6 4 3
8 8 N 1.47900 * 107.05859 * 1.22280 * 7 6 4
9 9 C 1.46901 * 111.00013 * 214.15737 * 8 7 6
10 10 C 1.52995 * 109.47108 * 175.79256 * 9 8 7
11 11 O 1.42905 * 109.47289 * 64.14623 * 10 9 8
12 12 C 1.42890 * 114.00158 * 180.02562 * 11 10 9
13 13 C 1.50704 * 109.47200 * 180.02562 * 12 11 10
14 14 H 1.08000 * 120.00015 * 359.97438 * 13 12 11
15 15 C 1.37881 * 119.99740 * 180.02562 * 13 12 11
16 16 N 1.31514 * 119.99376 * 179.97438 * 15 13 12
17 17 Si 1.86796 * 120.00556 * 359.97438 * 15 13 12
18 18 H 1.48497 * 109.47222 * 270.00746 * 17 15 13
19 19 H 1.48499 * 109.47298 * 149.99963 * 17 15 13
20 20 H 1.48504 * 109.46770 * 30.00011 * 17 15 13
21 21 C 1.48535 * 105.82036 * 334.67309 * 8 7 6
22 22 H 1.09004 * 109.46717 * 179.97438 * 1 2 3
23 23 H 1.09001 * 109.46805 * 299.99697 * 1 2 3
24 24 H 1.08999 * 109.47346 * 59.99596 * 1 2 3
25 25 H 1.09000 * 109.47126 * 240.00740 * 2 1 3
26 26 H 1.08996 * 109.47704 * 120.00035 * 2 1 3
27 27 H 1.09003 * 110.30404 * 21.39574 * 6 4 3
28 28 H 1.09002 * 110.30698 * 259.23504 * 6 4 3
29 29 H 1.09002 * 109.91252 * 241.87309 * 7 6 4
30 30 H 1.09001 * 109.91564 * 120.57974 * 7 6 4
31 31 H 1.09001 * 109.46789 * 55.78927 * 9 8 7
32 32 H 1.09002 * 109.47003 * 295.79388 * 9 8 7
33 33 H 1.08999 * 109.47282 * 304.14997 * 10 9 8
34 34 H 1.08998 * 109.46810 * 184.14526 * 10 9 8
35 35 H 1.09000 * 109.47217 * 59.99938 * 12 11 10
36 36 H 1.09000 * 109.47206 * 299.99658 * 12 11 10
37 37 H 0.97003 * 120.00051 * 179.97438 * 16 15 13
38 38 H 1.08996 * 110.66180 * 157.64518 * 21 8 7
39 39 H 1.08997 * 110.66405 * 280.77048 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1347 1.7103 0.0000
4 6 3.9370 1.5059 0.0008
5 1 4.2555 0.9063 0.8535
6 6 4.4161 0.8702 -1.3245
7 6 5.7202 1.6096 -1.6770
8 7 5.9734 2.5833 -0.5929
9 6 6.6044 3.8021 -1.1168
10 6 6.7546 4.8241 0.0118
11 8 7.6475 4.3116 1.0029
12 6 7.8578 5.1933 2.1075
13 6 8.8109 4.5554 3.0851
14 1 9.2153 3.5745 2.8832
15 6 9.1658 5.2236 4.2377
16 7 9.9972 4.6667 5.0910
17 14 8.4659 6.9198 4.5873
18 1 9.3609 7.9537 4.0083
19 1 8.3628 7.1200 6.0551
20 1 7.1173 7.0343 3.9762
21 6 4.6451 2.8840 -0.0002
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5139 -0.8899
25 1 1.8933 -0.5137 -0.8900
26 1 1.8934 -0.5138 0.8899
27 1 3.6723 1.0210 -2.1070
28 1 4.6099 -0.1934 -1.1856
29 1 5.6054 2.1326 -2.6265
30 1 6.5447 0.8994 -1.7385
31 1 5.9823 4.2222 -1.9071
32 1 7.5875 3.5581 -1.5193
33 1 5.7805 5.0127 0.4632
34 1 7.1546 5.7544 -0.3914
35 1 6.9065 5.3892 2.6021
36 1 8.2805 6.1315 1.7481
37 1 10.2473 5.1369 5.9018
38 1 4.7541 3.2613 1.0165
39 1 4.0999 3.5962 -0.6196
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385832346.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:06:44
Heat of formation + Delta-G solvation = -46.510969 kcal
Electronic energy + Delta-G solvation = -17329.515064 eV
Core-core repulsion = 14591.317477 eV
Total energy + Delta-G solvation = -2738.197587 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.04697 -36.67886 -33.15617 -32.92096 -32.25074 -29.17673 -28.53116 -26.99633
-24.03665 -22.58630 -21.79614 -21.10218 -20.45984 -16.92210 -16.69649 -16.37232
-15.70382 -15.59453 -14.99195 -14.78033 -14.33584 -14.09435 -13.79359 -13.52363
-13.11174 -12.74480 -12.62827 -12.13791 -12.03478 -11.96883 -11.93455 -11.63075
-11.20479 -11.15934 -10.92907 -10.91482 -10.62473 -10.38370 -9.96884 -9.82800
-9.12637 -8.79341 -8.41548 -8.27132 -7.83842 -6.07128 -4.05436 1.45852
2.38158 3.27377 3.34312 3.36171 4.08131 4.37825 4.39350 4.47335
4.63447 4.69145 4.71232 4.90448 5.09223 5.15467 5.24150 5.26408
5.36072 5.41267 5.48007 5.48825 5.60635 5.62858 5.76469 5.79411
5.83990 5.90221 5.95334 6.03114 6.19777 6.64285 6.92038 7.04274
7.10664 7.64883 8.08937 8.72875 9.06122 9.52629 11.06072
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.024535 B = 0.004083 C = 0.003782
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1140.938674 B = 6855.785331 C = 7401.957898
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.089 4.089
3 S -0.257 6.257
4 C -0.058 4.058
5 H 0.102 0.898
6 C -0.124 4.124
7 C 0.037 3.963
8 N -0.497 5.497
9 C 0.053 3.947
10 C 0.059 3.941
11 O -0.364 6.364
12 C 0.167 3.833
13 C -0.515 4.515
14 H 0.083 0.917
15 C 0.071 3.929
16 N -0.897 5.897
17 Si 0.875 3.125
18 H -0.274 1.274
19 H -0.282 1.282
20 H -0.267 1.267
21 C 0.061 3.939
22 H 0.069 0.931
23 H 0.065 0.935
24 H 0.063 0.937
25 H 0.079 0.921
26 H 0.081 0.919
27 H 0.077 0.923
28 H 0.073 0.927
29 H 0.045 0.955
30 H 0.082 0.918
31 H 0.043 0.957
32 H 0.086 0.914
33 H 0.038 0.962
34 H 0.042 0.958
35 H 0.001 0.999
36 H -0.004 1.004
37 H 0.266 0.734
38 H 0.096 0.904
39 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.067 -7.057 -14.538 23.504
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.238 4.238
3 S -0.029 6.029
4 C -0.188 4.188
5 H 0.120 0.880
6 C -0.164 4.164
7 C -0.092 4.092
8 N -0.222 5.222
9 C -0.075 4.075
10 C -0.019 4.019
11 O -0.283 6.283
12 C 0.092 3.908
13 C -0.553 4.553
14 H 0.101 0.899
15 C -0.130 4.130
16 N -0.535 5.535
17 Si 0.702 3.298
18 H -0.200 1.200
19 H -0.208 1.208
20 H -0.191 1.191
21 C -0.068 4.068
22 H 0.088 0.912
23 H 0.084 0.916
24 H 0.082 0.918
25 H 0.098 0.902
26 H 0.100 0.900
27 H 0.096 0.904
28 H 0.092 0.908
29 H 0.063 0.937
30 H 0.100 0.900
31 H 0.061 0.939
32 H 0.105 0.895
33 H 0.056 0.944
34 H 0.060 0.940
35 H 0.019 0.981
36 H 0.013 0.987
37 H 0.076 0.924
38 H 0.114 0.886
39 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -17.122 -6.482 -13.963 23.025
hybrid contribution -0.181 0.435 -0.247 0.532
sum -17.303 -6.047 -14.210 23.192
Atomic orbital electron populations
1.21513 0.92356 1.02426 1.03170 1.23281 0.99976 0.95555 1.04945
1.86845 1.05425 1.12740 1.97925 1.24109 0.91933 1.01320 1.01413
0.87959 1.22811 0.97478 1.00222 0.95913 1.22879 0.97124 0.95805
0.93385 1.64833 1.19072 1.11185 1.27086 1.22334 1.00008 0.89920
0.95216 1.22358 0.94097 0.94915 0.90521 1.88020 1.63885 1.44229
1.32154 1.20592 0.95633 0.89737 0.84845 1.20898 1.25728 1.05800
1.02839 0.89899 1.24769 0.94831 0.97809 0.95615 1.69880 1.34042
1.38301 1.11312 0.86860 0.80136 0.84934 0.77872 1.19995 1.20804
1.19137 1.23015 0.88408 0.93403 1.01976 0.91196 0.91633 0.91804
0.90197 0.90040 0.90446 0.90782 0.93698 0.89970 0.93945 0.89532
0.94420 0.93965 0.98145 0.98662 0.92436 0.88553 0.93162
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.96 9.92 37.16 0.37 -0.59 16
2 C -0.09 -0.75 6.54 37.16 0.24 -0.51 16
3 S -0.26 -2.92 21.04 -107.50 -2.26 -5.18 16
4 C -0.06 -0.71 3.58 -24.87 -0.09 -0.79 16
5 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16
6 C -0.12 -1.27 6.40 -25.37 -0.16 -1.44 16
7 C 0.04 0.43 6.70 -2.76 -0.02 0.42 16
8 N -0.50 -7.49 5.29 -230.46 -1.22 -8.71 16
9 C 0.05 0.79 5.23 -3.83 -0.02 0.77 16
10 C 0.06 1.06 5.88 37.15 0.22 1.28 16
11 O -0.36 -8.69 10.26 -35.23 -0.36 -9.05 16
12 C 0.17 4.36 4.76 36.01 0.17 4.53 16
13 C -0.51 -15.64 9.99 -34.44 -0.34 -15.99 16
14 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16
15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16
16 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16
17 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16
18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16
19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16
21 C 0.06 0.86 4.79 -1.90 -0.01 0.85 16
22 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
25 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16
26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
27 H 0.08 0.73 7.81 -51.93 -0.41 0.33 16
28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16
29 H 0.04 0.47 7.67 -51.93 -0.40 0.07 16
30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.04 0.52 7.97 -51.93 -0.41 0.11 16
32 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16
33 H 0.04 0.65 6.68 -51.93 -0.35 0.30 16
34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16
35 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16
36 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16
37 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16
38 H 0.10 1.57 7.56 -51.93 -0.39 1.17 16
39 H 0.05 0.67 7.92 -51.93 -0.41 0.26 16
LS Contribution 326.18 15.07 4.92 4.92
Total: -1.00 -32.52 326.18 -9.51 -42.04
By element:
Atomic # 1 Polarization: 2.62 SS G_CDS: -6.95 Total: -4.34 kcal
Atomic # 6 Polarization: -9.71 SS G_CDS: 0.26 Total: -9.45 kcal
Atomic # 7 Polarization: -35.60 SS G_CDS: -0.45 Total: -36.04 kcal
Atomic # 8 Polarization: -8.69 SS G_CDS: -0.36 Total: -9.05 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal
Atomic # 16 Polarization: -2.92 SS G_CDS: -2.26 Total: -5.18 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -32.52 -9.51 -42.04 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385832346.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.475 kcal
(2) G-P(sol) polarization free energy of solvation -32.523 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.511 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds