Wall clock time and date at job start Mon Mar 30 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81405 * 109.47080 * 2 1 4 4 C 1.81392 * 103.00140 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.64960 * 303.30312 * 4 3 2 6 6 C 1.54602 * 110.72414 * 66.45783 * 4 3 2 7 7 C 1.53994 * 105.14053 * 140.31468 * 6 4 3 8 8 N 1.47900 * 107.05859 * 1.22280 * 7 6 4 9 9 C 1.46901 * 111.00013 * 214.15737 * 8 7 6 10 10 C 1.52995 * 109.47108 * 175.79256 * 9 8 7 11 11 O 1.42905 * 109.47289 * 64.14623 * 10 9 8 12 12 C 1.42890 * 114.00158 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47200 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00015 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99740 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99376 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00556 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47222 * 270.00746 * 17 15 13 19 19 H 1.48499 * 109.47298 * 149.99963 * 17 15 13 20 20 H 1.48504 * 109.46770 * 30.00011 * 17 15 13 21 21 C 1.48535 * 105.82036 * 334.67309 * 8 7 6 22 22 H 1.09004 * 109.46717 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46805 * 299.99697 * 1 2 3 24 24 H 1.08999 * 109.47346 * 59.99596 * 1 2 3 25 25 H 1.09000 * 109.47126 * 240.00740 * 2 1 3 26 26 H 1.08996 * 109.47704 * 120.00035 * 2 1 3 27 27 H 1.09003 * 110.30404 * 21.39574 * 6 4 3 28 28 H 1.09002 * 110.30698 * 259.23504 * 6 4 3 29 29 H 1.09002 * 109.91252 * 241.87309 * 7 6 4 30 30 H 1.09001 * 109.91564 * 120.57974 * 7 6 4 31 31 H 1.09001 * 109.46789 * 55.78927 * 9 8 7 32 32 H 1.09002 * 109.47003 * 295.79388 * 9 8 7 33 33 H 1.08999 * 109.47282 * 304.14997 * 10 9 8 34 34 H 1.08998 * 109.46810 * 184.14526 * 10 9 8 35 35 H 1.09000 * 109.47217 * 59.99938 * 12 11 10 36 36 H 1.09000 * 109.47206 * 299.99658 * 12 11 10 37 37 H 0.97003 * 120.00051 * 179.97438 * 16 15 13 38 38 H 1.08996 * 110.66180 * 157.64518 * 21 8 7 39 39 H 1.08997 * 110.66405 * 280.77048 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9370 1.5059 0.0008 5 1 4.2555 0.9063 0.8535 6 6 4.4161 0.8702 -1.3245 7 6 5.7202 1.6096 -1.6770 8 7 5.9734 2.5833 -0.5929 9 6 6.6044 3.8021 -1.1168 10 6 6.7546 4.8241 0.0118 11 8 7.6475 4.3116 1.0029 12 6 7.8578 5.1933 2.1075 13 6 8.8109 4.5554 3.0851 14 1 9.2153 3.5745 2.8832 15 6 9.1658 5.2236 4.2377 16 7 9.9972 4.6667 5.0910 17 14 8.4659 6.9198 4.5873 18 1 9.3609 7.9537 4.0083 19 1 8.3628 7.1200 6.0551 20 1 7.1173 7.0343 3.9762 21 6 4.6451 2.8840 -0.0002 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.6723 1.0210 -2.1070 28 1 4.6099 -0.1934 -1.1856 29 1 5.6054 2.1326 -2.6265 30 1 6.5447 0.8994 -1.7385 31 1 5.9823 4.2222 -1.9071 32 1 7.5875 3.5581 -1.5193 33 1 5.7805 5.0127 0.4632 34 1 7.1546 5.7544 -0.3914 35 1 6.9065 5.3892 2.6021 36 1 8.2805 6.1315 1.7481 37 1 10.2473 5.1369 5.9018 38 1 4.7541 3.2613 1.0165 39 1 4.0999 3.5962 -0.6196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385832346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:44 Heat of formation + Delta-G solvation = -46.510969 kcal Electronic energy + Delta-G solvation = -17329.515064 eV Core-core repulsion = 14591.317477 eV Total energy + Delta-G solvation = -2738.197587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.04697 -36.67886 -33.15617 -32.92096 -32.25074 -29.17673 -28.53116 -26.99633 -24.03665 -22.58630 -21.79614 -21.10218 -20.45984 -16.92210 -16.69649 -16.37232 -15.70382 -15.59453 -14.99195 -14.78033 -14.33584 -14.09435 -13.79359 -13.52363 -13.11174 -12.74480 -12.62827 -12.13791 -12.03478 -11.96883 -11.93455 -11.63075 -11.20479 -11.15934 -10.92907 -10.91482 -10.62473 -10.38370 -9.96884 -9.82800 -9.12637 -8.79341 -8.41548 -8.27132 -7.83842 -6.07128 -4.05436 1.45852 2.38158 3.27377 3.34312 3.36171 4.08131 4.37825 4.39350 4.47335 4.63447 4.69145 4.71232 4.90448 5.09223 5.15467 5.24150 5.26408 5.36072 5.41267 5.48007 5.48825 5.60635 5.62858 5.76469 5.79411 5.83990 5.90221 5.95334 6.03114 6.19777 6.64285 6.92038 7.04274 7.10664 7.64883 8.08937 8.72875 9.06122 9.52629 11.06072 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.024535 B = 0.004083 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.938674 B = 6855.785331 C = 7401.957898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 S -0.257 6.257 4 C -0.058 4.058 5 H 0.102 0.898 6 C -0.124 4.124 7 C 0.037 3.963 8 N -0.497 5.497 9 C 0.053 3.947 10 C 0.059 3.941 11 O -0.364 6.364 12 C 0.167 3.833 13 C -0.515 4.515 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.061 3.939 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.001 0.999 36 H -0.004 1.004 37 H 0.266 0.734 38 H 0.096 0.904 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.067 -7.057 -14.538 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.238 4.238 3 S -0.029 6.029 4 C -0.188 4.188 5 H 0.120 0.880 6 C -0.164 4.164 7 C -0.092 4.092 8 N -0.222 5.222 9 C -0.075 4.075 10 C -0.019 4.019 11 O -0.283 6.283 12 C 0.092 3.908 13 C -0.553 4.553 14 H 0.101 0.899 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.702 3.298 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.068 4.068 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.013 0.987 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.122 -6.482 -13.963 23.025 hybrid contribution -0.181 0.435 -0.247 0.532 sum -17.303 -6.047 -14.210 23.192 Atomic orbital electron populations 1.21513 0.92356 1.02426 1.03170 1.23281 0.99976 0.95555 1.04945 1.86845 1.05425 1.12740 1.97925 1.24109 0.91933 1.01320 1.01413 0.87959 1.22811 0.97478 1.00222 0.95913 1.22879 0.97124 0.95805 0.93385 1.64833 1.19072 1.11185 1.27086 1.22334 1.00008 0.89920 0.95216 1.22358 0.94097 0.94915 0.90521 1.88020 1.63885 1.44229 1.32154 1.20592 0.95633 0.89737 0.84845 1.20898 1.25728 1.05800 1.02839 0.89899 1.24769 0.94831 0.97809 0.95615 1.69880 1.34042 1.38301 1.11312 0.86860 0.80136 0.84934 0.77872 1.19995 1.20804 1.19137 1.23015 0.88408 0.93403 1.01976 0.91196 0.91633 0.91804 0.90197 0.90040 0.90446 0.90782 0.93698 0.89970 0.93945 0.89532 0.94420 0.93965 0.98145 0.98662 0.92436 0.88553 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.92 37.16 0.37 -0.59 16 2 C -0.09 -0.75 6.54 37.16 0.24 -0.51 16 3 S -0.26 -2.92 21.04 -107.50 -2.26 -5.18 16 4 C -0.06 -0.71 3.58 -24.87 -0.09 -0.79 16 5 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 6 C -0.12 -1.27 6.40 -25.37 -0.16 -1.44 16 7 C 0.04 0.43 6.70 -2.76 -0.02 0.42 16 8 N -0.50 -7.49 5.29 -230.46 -1.22 -8.71 16 9 C 0.05 0.79 5.23 -3.83 -0.02 0.77 16 10 C 0.06 1.06 5.88 37.15 0.22 1.28 16 11 O -0.36 -8.69 10.26 -35.23 -0.36 -9.05 16 12 C 0.17 4.36 4.76 36.01 0.17 4.53 16 13 C -0.51 -15.64 9.99 -34.44 -0.34 -15.99 16 14 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 17 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 C 0.06 0.86 4.79 -1.90 -0.01 0.85 16 22 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.73 7.81 -51.93 -0.41 0.33 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.47 7.67 -51.93 -0.40 0.07 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.52 7.97 -51.93 -0.41 0.11 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.04 0.65 6.68 -51.93 -0.35 0.30 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 36 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 37 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.10 1.57 7.56 -51.93 -0.39 1.17 16 39 H 0.05 0.67 7.92 -51.93 -0.41 0.26 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -32.52 326.18 -9.51 -42.04 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -6.95 Total: -4.34 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 0.26 Total: -9.45 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.45 Total: -36.04 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.36 Total: -9.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.26 Total: -5.18 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.52 -9.51 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385832346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.475 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds