Wall clock time and date at job start Mon Mar 30 2020 05:06:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 S 1.81405 * 109.47080 * 2 1
4 4 C 1.81392 * 103.00140 * 179.97438 * 3 2 1
5 5 H 1.09000 * 110.64960 * 303.30312 * 4 3 2
6 6 C 1.54602 * 110.72414 * 66.45783 * 4 3 2
7 7 C 1.53994 * 105.14053 * 140.31468 * 6 4 3
8 8 N 1.47900 * 107.05859 * 1.22280 * 7 6 4
9 9 C 1.46901 * 111.00013 * 214.15737 * 8 7 6
10 10 C 1.52995 * 109.47108 * 175.79256 * 9 8 7
11 11 O 1.42905 * 109.47289 * 64.14623 * 10 9 8
12 12 C 1.42890 * 114.00158 * 180.02562 * 11 10 9
13 13 C 1.50704 * 109.47200 * 180.02562 * 12 11 10
14 14 H 1.08000 * 120.00015 * 359.97438 * 13 12 11
15 15 C 1.37881 * 119.99740 * 180.02562 * 13 12 11
16 16 N 1.31514 * 119.99376 * 179.97438 * 15 13 12
17 17 Si 1.86796 * 120.00556 * 359.97438 * 15 13 12
18 18 H 1.48497 * 109.47222 * 270.00746 * 17 15 13
19 19 H 1.48499 * 109.47298 * 149.99963 * 17 15 13
20 20 H 1.48504 * 109.46770 * 30.00011 * 17 15 13
21 21 C 1.48535 * 105.82036 * 334.67309 * 8 7 6
22 22 H 1.09004 * 109.46717 * 179.97438 * 1 2 3
23 23 H 1.09001 * 109.46805 * 299.99697 * 1 2 3
24 24 H 1.08999 * 109.47346 * 59.99596 * 1 2 3
25 25 H 1.09000 * 109.47126 * 240.00740 * 2 1 3
26 26 H 1.08996 * 109.47704 * 120.00035 * 2 1 3
27 27 H 1.09003 * 110.30404 * 21.39574 * 6 4 3
28 28 H 1.09002 * 110.30698 * 259.23504 * 6 4 3
29 29 H 1.09002 * 109.91252 * 241.87309 * 7 6 4
30 30 H 1.09001 * 109.91564 * 120.57974 * 7 6 4
31 31 H 1.09001 * 109.46789 * 55.78927 * 9 8 7
32 32 H 1.09002 * 109.47003 * 295.79388 * 9 8 7
33 33 H 1.08999 * 109.47282 * 304.14997 * 10 9 8
34 34 H 1.08998 * 109.46810 * 184.14526 * 10 9 8
35 35 H 1.09000 * 109.47217 * 59.99938 * 12 11 10
36 36 H 1.09000 * 109.47206 * 299.99658 * 12 11 10
37 37 H 0.97003 * 120.00051 * 179.97438 * 16 15 13
38 38 H 1.08996 * 110.66180 * 157.64518 * 21 8 7
39 39 H 1.08997 * 110.66405 * 280.77048 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1347 1.7103 0.0000
4 6 3.9370 1.5059 0.0008
5 1 4.2555 0.9063 0.8535
6 6 4.4161 0.8702 -1.3245
7 6 5.7202 1.6096 -1.6770
8 7 5.9734 2.5833 -0.5929
9 6 6.6044 3.8021 -1.1168
10 6 6.7546 4.8241 0.0118
11 8 7.6475 4.3116 1.0029
12 6 7.8578 5.1933 2.1075
13 6 8.8109 4.5554 3.0851
14 1 9.2153 3.5745 2.8832
15 6 9.1658 5.2236 4.2377
16 7 9.9972 4.6667 5.0910
17 14 8.4659 6.9198 4.5873
18 1 9.3609 7.9537 4.0083
19 1 8.3628 7.1200 6.0551
20 1 7.1173 7.0343 3.9762
21 6 4.6451 2.8840 -0.0002
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5139 -0.8899
25 1 1.8933 -0.5137 -0.8900
26 1 1.8934 -0.5138 0.8899
27 1 3.6723 1.0210 -2.1070
28 1 4.6099 -0.1934 -1.1856
29 1 5.6054 2.1326 -2.6265
30 1 6.5447 0.8994 -1.7385
31 1 5.9823 4.2222 -1.9071
32 1 7.5875 3.5581 -1.5193
33 1 5.7805 5.0127 0.4632
34 1 7.1546 5.7544 -0.3914
35 1 6.9065 5.3892 2.6021
36 1 8.2805 6.1315 1.7481
37 1 10.2473 5.1369 5.9018
38 1 4.7541 3.2613 1.0165
39 1 4.0999 3.5962 -0.6196
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385832346.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:06:44
Heat of formation + Delta-G solvation = -68.849041 kcal
Electronic energy + Delta-G solvation = -17330.483715 eV
Core-core repulsion = 14591.317477 eV
Total energy + Delta-G solvation = -2739.166238 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.14573 -38.37336 -34.96102 -33.85647 -33.56177 -30.56014 -29.96057 -28.57078
-24.82125 -23.97903 -23.62193 -22.01416 -21.62301 -19.04730 -17.77700 -17.60125
-17.24239 -16.61513 -16.47195 -15.98641 -15.65643 -15.27600 -14.99790 -14.74816
-14.42972 -14.25619 -13.73308 -13.47939 -13.38786 -13.07540 -12.83499 -12.76864
-12.71618 -12.30929 -12.18966 -12.09499 -11.86362 -11.79323 -11.73159 -11.33078
-10.92355 -10.81453 -10.32251 -9.33836 -8.71966 -8.37332 -6.44896 0.61969
1.32017 1.35555 1.46439 1.56628 2.29022 2.94963 2.98811 3.13650
3.43822 3.57065 3.98163 4.02686 4.09355 4.13567 4.21202 4.21979
4.34730 4.50307 4.51165 4.52998 4.60594 4.64643 4.73906 4.85377
4.86995 4.89052 4.91352 4.96206 5.02931 5.11446 5.22482 5.44156
5.86413 5.93575 6.06917 6.59349 6.78629 7.19629 8.80082
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.024535 B = 0.004083 C = 0.003782
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1140.938674 B = 6855.785331 C = 7401.957898
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.081 4.081
3 S -0.287 6.287
4 C -0.054 4.054
5 H 0.086 0.914
6 C -0.113 4.113
7 C 0.037 3.963
8 N -0.530 5.530
9 C 0.059 3.941
10 C 0.050 3.950
11 O -0.392 6.392
12 C 0.179 3.821
13 C -0.543 4.543
14 H 0.028 0.972
15 C 0.012 3.988
16 N -0.943 5.943
17 Si 0.956 3.044
18 H -0.257 1.257
19 H -0.272 1.272
20 H -0.248 1.248
21 C 0.064 3.936
22 H 0.091 0.909
23 H 0.057 0.943
24 H 0.063 0.937
25 H 0.094 0.906
26 H 0.082 0.918
27 H 0.091 0.909
28 H 0.086 0.914
29 H 0.063 0.937
30 H 0.081 0.919
31 H 0.076 0.924
32 H 0.083 0.917
33 H 0.043 0.957
34 H 0.061 0.939
35 H 0.006 0.994
36 H 0.010 0.990
37 H 0.273 0.727
38 H 0.064 0.936
39 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.990 -6.103 -15.997 25.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.229 4.229
3 S -0.060 6.060
4 C -0.183 4.183
5 H 0.104 0.896
6 C -0.153 4.153
7 C -0.091 4.091
8 N -0.256 5.256
9 C -0.069 4.069
10 C -0.027 4.027
11 O -0.312 6.312
12 C 0.103 3.897
13 C -0.581 4.581
14 H 0.047 0.953
15 C -0.185 4.185
16 N -0.582 5.582
17 Si 0.777 3.223
18 H -0.182 1.182
19 H -0.197 1.197
20 H -0.172 1.172
21 C -0.064 4.064
22 H 0.109 0.891
23 H 0.076 0.924
24 H 0.083 0.917
25 H 0.112 0.888
26 H 0.100 0.900
27 H 0.110 0.890
28 H 0.105 0.895
29 H 0.081 0.919
30 H 0.099 0.901
31 H 0.094 0.906
32 H 0.101 0.899
33 H 0.061 0.939
34 H 0.079 0.921
35 H 0.024 0.976
36 H 0.028 0.972
37 H 0.082 0.918
38 H 0.083 0.917
39 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -19.051 -5.545 -15.450 25.147
hybrid contribution 0.426 0.003 0.184 0.464
sum -18.624 -5.542 -15.266 24.711
Atomic orbital electron populations
1.21529 0.91207 1.03666 1.02834 1.23385 1.00761 0.93036 1.05694
1.86925 1.04939 1.16079 1.98009 1.23966 0.92378 1.00016 1.01987
0.89562 1.22773 0.96934 1.00574 0.95004 1.22930 0.97782 0.95269
0.93136 1.64750 1.19810 1.11963 1.29053 1.22300 1.00609 0.89468
0.94562 1.22720 0.93203 0.96761 0.90034 1.87970 1.65606 1.44843
1.32735 1.20285 0.94546 0.89875 0.84952 1.21155 1.27460 1.04333
1.05141 0.95334 1.25851 0.94787 1.03135 0.94776 1.70037 1.35368
1.40757 1.12060 0.85600 0.80197 0.78163 0.78328 1.18163 1.19725
1.17184 1.22870 0.88553 0.94733 1.00276 0.89061 0.92372 0.91748
0.88762 0.89957 0.89019 0.89506 0.91897 0.90095 0.90584 0.89894
0.93894 0.92128 0.97635 0.97192 0.91794 0.91737 0.92315
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.61 9.92 71.98 0.71 -0.90 16
2 C -0.08 -1.21 6.54 71.98 0.47 -0.73 16
3 S -0.29 -6.23 21.04 -56.49 -1.19 -7.42 16
4 C -0.05 -1.28 3.58 31.80 0.11 -1.16 16
5 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16
6 C -0.11 -2.10 6.40 31.48 0.20 -1.90 16
7 C 0.04 0.81 6.70 86.45 0.58 1.39 16
8 N -0.53 -15.67 5.29 -883.03 -4.67 -20.34 16
9 C 0.06 1.65 5.23 86.30 0.45 2.10 16
10 C 0.05 1.74 5.88 71.98 0.42 2.16 16
11 O -0.39 -18.98 10.26 -148.98 -1.53 -20.51 16
12 C 0.18 9.34 4.76 71.24 0.34 9.68 16
13 C -0.54 -34.19 9.99 25.60 0.26 -33.94 16
14 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16
15 C 0.01 0.75 5.47 84.66 0.46 1.21 16
16 N -0.94 -60.59 13.96 21.45 0.30 -60.29 16
17 Si 0.96 44.43 27.47 68.60 1.88 46.31 16
18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16
19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
20 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16
21 C 0.06 1.80 4.79 86.65 0.42 2.22 16
22 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16
23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
27 H 0.09 1.47 7.81 -2.39 -0.02 1.45 16
28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
29 H 0.06 1.14 7.67 -2.39 -0.02 1.12 16
30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16
31 H 0.08 1.64 7.97 -2.39 -0.02 1.62 16
32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16
33 H 0.04 1.44 6.68 -2.39 -0.02 1.43 16
34 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16
35 H 0.01 0.30 7.20 -2.39 -0.02 0.28 16
36 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16
37 H 0.27 16.05 8.31 -92.71 -0.77 15.27 16
38 H 0.06 2.18 7.56 -2.39 -0.02 2.16 16
39 H 0.06 1.52 7.92 -2.39 -0.02 1.50 16
Total: -1.00 -72.82 326.18 0.16 -72.67
By element:
Atomic # 1 Polarization: 8.52 SS G_CDS: 0.93 Total: 9.45 kcal
Atomic # 6 Polarization: -24.30 SS G_CDS: 4.43 Total: -19.87 kcal
Atomic # 7 Polarization: -76.26 SS G_CDS: -4.37 Total: -80.63 kcal
Atomic # 8 Polarization: -18.98 SS G_CDS: -1.53 Total: -20.51 kcal
Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal
Atomic # 16 Polarization: -6.23 SS G_CDS: -1.19 Total: -7.42 kcal
Total: -72.82 0.16 -72.67 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385832346.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.820 kcal
(2) G-P(sol) polarization free energy of solvation -72.825 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.669 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.849 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds