Wall clock time and date at job start Mon Mar 30 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81405 * 109.47080 * 2 1 4 4 C 1.81392 * 103.00140 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.64960 * 303.30312 * 4 3 2 6 6 C 1.54602 * 110.72414 * 66.45783 * 4 3 2 7 7 C 1.53994 * 105.14053 * 140.31468 * 6 4 3 8 8 N 1.47900 * 107.05859 * 1.22280 * 7 6 4 9 9 C 1.46901 * 111.00013 * 214.15737 * 8 7 6 10 10 C 1.52995 * 109.47108 * 175.79256 * 9 8 7 11 11 O 1.42905 * 109.47289 * 64.14623 * 10 9 8 12 12 C 1.42890 * 114.00158 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47200 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00015 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99740 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99376 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00556 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47222 * 270.00746 * 17 15 13 19 19 H 1.48499 * 109.47298 * 149.99963 * 17 15 13 20 20 H 1.48504 * 109.46770 * 30.00011 * 17 15 13 21 21 C 1.48535 * 105.82036 * 334.67309 * 8 7 6 22 22 H 1.09004 * 109.46717 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46805 * 299.99697 * 1 2 3 24 24 H 1.08999 * 109.47346 * 59.99596 * 1 2 3 25 25 H 1.09000 * 109.47126 * 240.00740 * 2 1 3 26 26 H 1.08996 * 109.47704 * 120.00035 * 2 1 3 27 27 H 1.09003 * 110.30404 * 21.39574 * 6 4 3 28 28 H 1.09002 * 110.30698 * 259.23504 * 6 4 3 29 29 H 1.09002 * 109.91252 * 241.87309 * 7 6 4 30 30 H 1.09001 * 109.91564 * 120.57974 * 7 6 4 31 31 H 1.09001 * 109.46789 * 55.78927 * 9 8 7 32 32 H 1.09002 * 109.47003 * 295.79388 * 9 8 7 33 33 H 1.08999 * 109.47282 * 304.14997 * 10 9 8 34 34 H 1.08998 * 109.46810 * 184.14526 * 10 9 8 35 35 H 1.09000 * 109.47217 * 59.99938 * 12 11 10 36 36 H 1.09000 * 109.47206 * 299.99658 * 12 11 10 37 37 H 0.97003 * 120.00051 * 179.97438 * 16 15 13 38 38 H 1.08996 * 110.66180 * 157.64518 * 21 8 7 39 39 H 1.08997 * 110.66405 * 280.77048 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9370 1.5059 0.0008 5 1 4.2555 0.9063 0.8535 6 6 4.4161 0.8702 -1.3245 7 6 5.7202 1.6096 -1.6770 8 7 5.9734 2.5833 -0.5929 9 6 6.6044 3.8021 -1.1168 10 6 6.7546 4.8241 0.0118 11 8 7.6475 4.3116 1.0029 12 6 7.8578 5.1933 2.1075 13 6 8.8109 4.5554 3.0851 14 1 9.2153 3.5745 2.8832 15 6 9.1658 5.2236 4.2377 16 7 9.9972 4.6667 5.0910 17 14 8.4659 6.9198 4.5873 18 1 9.3609 7.9537 4.0083 19 1 8.3628 7.1200 6.0551 20 1 7.1173 7.0343 3.9762 21 6 4.6451 2.8840 -0.0002 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.6723 1.0210 -2.1070 28 1 4.6099 -0.1934 -1.1856 29 1 5.6054 2.1326 -2.6265 30 1 6.5447 0.8994 -1.7385 31 1 5.9823 4.2222 -1.9071 32 1 7.5875 3.5581 -1.5193 33 1 5.7805 5.0127 0.4632 34 1 7.1546 5.7544 -0.3914 35 1 6.9065 5.3892 2.6021 36 1 8.2805 6.1315 1.7481 37 1 10.2473 5.1369 5.9018 38 1 4.7541 3.2613 1.0165 39 1 4.0999 3.5962 -0.6196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385832346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:44 Heat of formation + Delta-G solvation = -68.849041 kcal Electronic energy + Delta-G solvation = -17330.483715 eV Core-core repulsion = 14591.317477 eV Total energy + Delta-G solvation = -2739.166238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.14573 -38.37336 -34.96102 -33.85647 -33.56177 -30.56014 -29.96057 -28.57078 -24.82125 -23.97903 -23.62193 -22.01416 -21.62301 -19.04730 -17.77700 -17.60125 -17.24239 -16.61513 -16.47195 -15.98641 -15.65643 -15.27600 -14.99790 -14.74816 -14.42972 -14.25619 -13.73308 -13.47939 -13.38786 -13.07540 -12.83499 -12.76864 -12.71618 -12.30929 -12.18966 -12.09499 -11.86362 -11.79323 -11.73159 -11.33078 -10.92355 -10.81453 -10.32251 -9.33836 -8.71966 -8.37332 -6.44896 0.61969 1.32017 1.35555 1.46439 1.56628 2.29022 2.94963 2.98811 3.13650 3.43822 3.57065 3.98163 4.02686 4.09355 4.13567 4.21202 4.21979 4.34730 4.50307 4.51165 4.52998 4.60594 4.64643 4.73906 4.85377 4.86995 4.89052 4.91352 4.96206 5.02931 5.11446 5.22482 5.44156 5.86413 5.93575 6.06917 6.59349 6.78629 7.19629 8.80082 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.024535 B = 0.004083 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.938674 B = 6855.785331 C = 7401.957898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 S -0.287 6.287 4 C -0.054 4.054 5 H 0.086 0.914 6 C -0.113 4.113 7 C 0.037 3.963 8 N -0.530 5.530 9 C 0.059 3.941 10 C 0.050 3.950 11 O -0.392 6.392 12 C 0.179 3.821 13 C -0.543 4.543 14 H 0.028 0.972 15 C 0.012 3.988 16 N -0.943 5.943 17 Si 0.956 3.044 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.248 1.248 21 C 0.064 3.936 22 H 0.091 0.909 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.006 0.994 36 H 0.010 0.990 37 H 0.273 0.727 38 H 0.064 0.936 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.990 -6.103 -15.997 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.229 4.229 3 S -0.060 6.060 4 C -0.183 4.183 5 H 0.104 0.896 6 C -0.153 4.153 7 C -0.091 4.091 8 N -0.256 5.256 9 C -0.069 4.069 10 C -0.027 4.027 11 O -0.312 6.312 12 C 0.103 3.897 13 C -0.581 4.581 14 H 0.047 0.953 15 C -0.185 4.185 16 N -0.582 5.582 17 Si 0.777 3.223 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.172 1.172 21 C -0.064 4.064 22 H 0.109 0.891 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.028 0.972 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.051 -5.545 -15.450 25.147 hybrid contribution 0.426 0.003 0.184 0.464 sum -18.624 -5.542 -15.266 24.711 Atomic orbital electron populations 1.21529 0.91207 1.03666 1.02834 1.23385 1.00761 0.93036 1.05694 1.86925 1.04939 1.16079 1.98009 1.23966 0.92378 1.00016 1.01987 0.89562 1.22773 0.96934 1.00574 0.95004 1.22930 0.97782 0.95269 0.93136 1.64750 1.19810 1.11963 1.29053 1.22300 1.00609 0.89468 0.94562 1.22720 0.93203 0.96761 0.90034 1.87970 1.65606 1.44843 1.32735 1.20285 0.94546 0.89875 0.84952 1.21155 1.27460 1.04333 1.05141 0.95334 1.25851 0.94787 1.03135 0.94776 1.70037 1.35368 1.40757 1.12060 0.85600 0.80197 0.78163 0.78328 1.18163 1.19725 1.17184 1.22870 0.88553 0.94733 1.00276 0.89061 0.92372 0.91748 0.88762 0.89957 0.89019 0.89506 0.91897 0.90095 0.90584 0.89894 0.93894 0.92128 0.97635 0.97192 0.91794 0.91737 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.92 71.98 0.71 -0.90 16 2 C -0.08 -1.21 6.54 71.98 0.47 -0.73 16 3 S -0.29 -6.23 21.04 -56.49 -1.19 -7.42 16 4 C -0.05 -1.28 3.58 31.80 0.11 -1.16 16 5 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 6 C -0.11 -2.10 6.40 31.48 0.20 -1.90 16 7 C 0.04 0.81 6.70 86.45 0.58 1.39 16 8 N -0.53 -15.67 5.29 -883.03 -4.67 -20.34 16 9 C 0.06 1.65 5.23 86.30 0.45 2.10 16 10 C 0.05 1.74 5.88 71.98 0.42 2.16 16 11 O -0.39 -18.98 10.26 -148.98 -1.53 -20.51 16 12 C 0.18 9.34 4.76 71.24 0.34 9.68 16 13 C -0.54 -34.19 9.99 25.60 0.26 -33.94 16 14 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 15 C 0.01 0.75 5.47 84.66 0.46 1.21 16 16 N -0.94 -60.59 13.96 21.45 0.30 -60.29 16 17 Si 0.96 44.43 27.47 68.60 1.88 46.31 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 21 C 0.06 1.80 4.79 86.65 0.42 2.22 16 22 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.47 7.81 -2.39 -0.02 1.45 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.14 7.67 -2.39 -0.02 1.12 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.64 7.97 -2.39 -0.02 1.62 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.04 1.44 6.68 -2.39 -0.02 1.43 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 35 H 0.01 0.30 7.20 -2.39 -0.02 0.28 16 36 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 37 H 0.27 16.05 8.31 -92.71 -0.77 15.27 16 38 H 0.06 2.18 7.56 -2.39 -0.02 2.16 16 39 H 0.06 1.52 7.92 -2.39 -0.02 1.50 16 Total: -1.00 -72.82 326.18 0.16 -72.67 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.93 Total: 9.45 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.43 Total: -19.87 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -4.37 Total: -80.63 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.53 Total: -20.51 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: -6.23 SS G_CDS: -1.19 Total: -7.42 kcal Total: -72.82 0.16 -72.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385832346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.820 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds