Wall clock time and date at job start Mon Mar 30 2020 05:15:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81401 * 1
3 3 O 1.42095 * 109.47161 * 2 1
4 4 C 1.81405 * 102.99930 * 116.38646 * 2 1 3
5 5 C 1.52997 * 112.84878 * 65.15125 * 4 2 1
6 6 N 1.46906 * 109.47320 * 48.82100 * 5 4 2
7 7 C 1.46898 * 111.00142 * 180.02562 * 6 5 4
8 8 C 1.52998 * 109.47057 * 180.02562 * 7 6 5
9 9 C 1.53005 * 109.47167 * 179.97438 * 8 7 6
10 10 C 1.50700 * 109.47226 * 179.97438 * 9 8 7
11 11 H 1.07999 * 119.99993 * 359.97438 * 10 9 8
12 12 C 1.37871 * 119.99942 * 179.97438 * 10 9 8
13 13 N 1.31518 * 120.00105 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 119.99881 * 179.97438 * 12 10 9
15 15 H 1.48494 * 109.47080 * 60.00593 * 14 12 10
16 16 H 1.48506 * 109.46894 * 180.02562 * 14 12 10
17 17 H 1.48504 * 109.47419 * 299.99873 * 14 12 10
18 18 C 1.53776 * 113.68713 * 196.41878 * 4 2 1
19 19 C 1.53781 * 87.08188 * 89.12902 * 18 4 2
20 20 C 1.53778 * 87.08085 * 25.43012 * 19 18 4
21 21 H 1.09008 * 109.46642 * 308.44362 * 1 2 3
22 22 H 1.09005 * 109.47110 * 68.43843 * 1 2 3
23 23 H 1.08996 * 109.47434 * 188.44474 * 1 2 3
24 24 H 1.09002 * 109.47249 * 288.82511 * 5 4 2
25 25 H 1.08998 * 109.47443 * 168.82016 * 5 4 2
26 26 H 1.00901 * 110.99826 * 56.04558 * 6 5 4
27 27 H 1.08998 * 109.47395 * 59.99830 * 7 6 5
28 28 H 1.09005 * 109.46979 * 299.99873 * 7 6 5
29 29 H 1.09000 * 109.47035 * 299.99203 * 8 7 6
30 30 H 1.08998 * 109.47328 * 59.99580 * 8 7 6
31 31 H 1.09000 * 109.46652 * 299.99634 * 9 8 7
32 32 H 1.08998 * 109.47179 * 59.99685 * 9 8 7
33 33 H 0.96996 * 119.99847 * 179.97438 * 13 12 10
34 34 H 1.09006 * 113.61217 * 203.67775 * 18 4 2
35 35 H 1.08995 * 113.61719 * 334.57601 * 18 4 2
36 36 H 1.09001 * 113.60902 * 270.87919 * 19 18 4
37 37 H 1.08995 * 113.68879 * 139.98828 * 19 18 4
38 38 H 1.08996 * 113.61542 * 220.02058 * 20 19 18
39 39 H 1.08997 * 113.69254 * 89.12684 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.2877 1.3397 0.0000
4 6 2.2221 -0.7855 1.5834
5 6 1.7784 -2.2481 1.6528
6 7 2.2241 -2.9530 0.4433
7 6 1.8143 -4.3633 0.4748
8 6 2.2958 -5.0628 -0.7979
9 6 1.8696 -6.5319 -0.7649
10 6 2.3434 -7.2207 -2.0188
11 1 2.8930 -6.6660 -2.7648
12 6 2.0750 -8.5589 -2.2135
13 7 1.4052 -9.2343 -1.3052
14 14 2.6616 -9.4126 -3.7680
15 1 4.1418 -9.3278 -3.8508
16 1 2.2480 -10.8385 -3.7359
17 1 2.0607 -8.7500 -4.9535
18 6 3.6772 -0.5615 2.0274
19 6 3.1841 0.7158 2.7276
20 6 1.8032 0.0440 2.8086
21 1 -0.3633 0.6390 0.8050
22 1 -0.3633 0.3777 -0.9558
23 1 -0.3634 -1.0165 0.1509
24 1 0.6915 -2.2953 1.7210
25 1 2.2184 -2.7201 2.5312
26 1 3.2223 -2.8687 0.3229
27 1 0.7277 -4.4248 0.5347
28 1 2.2543 -4.8502 1.3452
29 1 1.8561 -4.5761 -1.6685
30 1 3.3825 -5.0013 -0.8574
31 1 2.3097 -7.0183 0.1057
32 1 0.7831 -6.5937 -0.7052
33 1 1.2161 -10.1757 -1.4424
34 1 4.0458 -1.3222 2.7156
35 1 4.3613 -0.3700 1.2008
36 1 3.2033 1.5989 2.0889
37 1 3.6441 0.8871 3.7007
38 1 0.9745 0.7244 2.6127
39 1 1.6580 -0.5513 3.7100
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000393696027.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:15:22
Heat of formation + Delta-G solvation = -32.512667 kcal
Electronic energy + Delta-G solvation = -17434.372312 eV
Core-core repulsion = 14696.781738 eV
Total energy + Delta-G solvation = -2737.590575 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.27519 -36.27436 -35.49432 -33.41169 -31.31239 -29.14573 -27.94574 -25.95168
-25.42255 -22.79389 -22.00187 -20.29904 -20.03652 -17.17312 -16.52855 -16.26627
-15.49063 -15.32666 -14.91922 -14.55214 -14.15657 -13.94455 -13.84794 -13.19715
-13.07750 -12.70066 -12.54469 -12.23828 -12.06068 -11.95769 -11.53598 -11.45359
-11.31950 -10.81524 -10.72993 -10.57588 -10.53200 -10.39307 -9.94492 -9.67405
-9.31549 -9.04999 -8.41108 -8.32420 -8.01249 -5.98126 -4.00146 1.52378
2.58886 3.35207 3.39604 3.42077 3.73397 4.04353 4.36446 4.44649
4.51447 4.57457 4.77319 5.04314 5.21356 5.28394 5.37946 5.41039
5.43262 5.48074 5.61969 5.68320 5.71374 5.78502 5.88286 5.92263
5.98115 6.13759 6.32240 6.71853 6.74869 7.15151 7.26451 7.56952
7.70258 7.85135 8.02523 8.45495 9.07302 9.64000 11.13274
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.037037 B = 0.003574 C = 0.003474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 755.811797 B = 7832.253485 C = 8058.876166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.485 4.485
2 S 1.295 4.705
3 O -0.862 6.862
4 C -0.403 4.403
5 C 0.099 3.901
6 N -0.692 5.692
7 C 0.059 3.941
8 C -0.108 4.108
9 C 0.021 3.979
10 C -0.519 4.519
11 H 0.056 0.944
12 C 0.056 3.944
13 N -0.898 5.898
14 Si 0.891 3.109
15 H -0.277 1.277
16 H -0.288 1.288
17 H -0.276 1.276
18 C -0.098 4.098
19 C -0.155 4.155
20 C -0.116 4.116
21 H 0.074 0.926
22 H 0.105 0.895
23 H 0.116 0.884
24 H 0.075 0.925
25 H 0.035 0.965
26 H 0.342 0.658
27 H 0.068 0.932
28 H 0.025 0.975
29 H 0.059 0.941
30 H 0.046 0.954
31 H 0.013 0.987
32 H 0.016 0.984
33 H 0.260 0.740
34 H 0.086 0.914
35 H 0.073 0.927
36 H 0.096 0.904
37 H 0.068 0.932
38 H 0.059 0.941
39 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.635 16.822 6.581 18.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.643 4.643
2 S 1.492 4.508
3 O -0.858 6.858
4 C -0.500 4.500
5 C -0.032 4.032
6 N -0.323 5.323
7 C -0.069 4.069
8 C -0.146 4.146
9 C -0.017 4.017
10 C -0.557 4.557
11 H 0.074 0.926
12 C -0.145 4.145
13 N -0.537 5.537
14 Si 0.719 3.281
15 H -0.203 1.203
16 H -0.214 1.214
17 H -0.202 1.202
18 C -0.136 4.136
19 C -0.192 4.192
20 C -0.155 4.155
21 H 0.093 0.907
22 H 0.123 0.877
23 H 0.135 0.865
24 H 0.093 0.907
25 H 0.053 0.947
26 H 0.159 0.841
27 H 0.087 0.913
28 H 0.043 0.957
29 H 0.078 0.922
30 H 0.065 0.935
31 H 0.031 0.969
32 H 0.034 0.966
33 H 0.070 0.930
34 H 0.105 0.895
35 H 0.091 0.909
36 H 0.115 0.885
37 H 0.087 0.913
38 H 0.078 0.922
39 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 0.628 17.202 5.565 18.090
hybrid contribution -0.106 0.037 1.738 1.741
sum 0.522 17.238 7.302 18.728
Atomic orbital electron populations
1.27578 1.21691 1.08191 1.06795 1.71431 0.86150 0.96192 0.97053
1.92964 1.73866 1.38241 1.80700 1.29186 1.03250 1.03906 1.13669
1.21485 1.00401 0.88983 0.92299 1.60592 1.20185 1.14631 1.36916
1.22135 1.00551 0.85412 0.98841 1.21640 0.99657 0.98221 0.95129
1.19068 0.96672 0.88986 0.96929 1.21230 1.35276 0.94616 1.04596
0.92624 1.25025 0.95294 0.97649 0.96535 1.69955 1.40371 1.08961
1.34413 0.86669 0.79159 0.78442 0.83786 1.20277 1.21408 1.20196
1.22547 0.92903 0.97918 1.00253 1.23067 0.96201 0.98396 1.01546
1.22819 0.97519 0.97732 0.97385 0.90668 0.87666 0.86488 0.90701
0.94703 0.84055 0.91313 0.95686 0.92175 0.93493 0.96911 0.96597
0.93018 0.89501 0.90877 0.88526 0.91317 0.92224 0.89715
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.48 -4.50 10.55 101.05 1.07 -3.44 16
2 S 1.29 13.27 12.61 -107.50 -1.36 11.91 16
3 O -0.86 -13.05 16.23 -35.23 -0.57 -13.62 16
4 C -0.40 -3.87 0.90 -89.81 -0.08 -3.95 16
5 C 0.10 0.98 5.04 -3.82 -0.02 0.96 16
6 N -0.69 -7.79 5.85 -113.78 -0.67 -8.46 16
7 C 0.06 0.87 5.69 -3.83 -0.02 0.85 16
8 C -0.11 -2.02 5.41 -26.73 -0.14 -2.16 16
9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16
10 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16
11 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16
12 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16
13 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16
14 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16
15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
18 C -0.10 -0.93 7.22 -25.92 -0.19 -1.12 16
19 C -0.15 -1.60 7.66 -25.92 -0.20 -1.80 16
20 C -0.12 -1.13 7.19 -25.92 -0.19 -1.32 16
21 H 0.07 0.73 7.59 -51.92 -0.39 0.33 16
22 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16
23 H 0.12 0.98 7.67 -51.93 -0.40 0.58 16
24 H 0.07 0.72 7.70 -51.93 -0.40 0.32 16
25 H 0.03 0.36 7.94 -51.93 -0.41 -0.05 16
26 H 0.34 3.54 8.73 -39.29 -0.34 3.20 16
27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
34 H 0.09 0.76 7.96 -51.93 -0.41 0.35 16
35 H 0.07 0.69 8.10 -51.93 -0.42 0.26 16
36 H 0.10 1.21 6.66 -51.93 -0.35 0.87 16
37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.06 0.61 7.49 -51.93 -0.39 0.22 16
39 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16
LS Contribution 327.16 15.07 4.93 4.93
Total: -1.00 -32.30 327.16 -9.13 -41.43
By element:
Atomic # 1 Polarization: 4.97 SS G_CDS: -6.86 Total: -1.89 kcal
Atomic # 6 Polarization: -24.39 SS G_CDS: -0.32 Total: -24.72 kcal
Atomic # 7 Polarization: -34.37 SS G_CDS: 0.07 Total: -34.30 kcal
Atomic # 8 Polarization: -13.05 SS G_CDS: -0.57 Total: -13.62 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Atomic # 16 Polarization: 13.27 SS G_CDS: -1.36 Total: 11.91 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -32.30 -9.13 -41.43 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000393696027.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.916 kcal
(2) G-P(sol) polarization free energy of solvation -32.299 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds