Wall clock time and date at job start Mon Mar 30 2020 05:15:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81401 * 1
3 3 O 1.42095 * 109.47161 * 2 1
4 4 C 1.81405 * 102.99930 * 116.38646 * 2 1 3
5 5 C 1.52997 * 112.84878 * 65.15125 * 4 2 1
6 6 N 1.46906 * 109.47320 * 48.82100 * 5 4 2
7 7 C 1.46898 * 111.00142 * 180.02562 * 6 5 4
8 8 C 1.52998 * 109.47057 * 180.02562 * 7 6 5
9 9 C 1.53005 * 109.47167 * 179.97438 * 8 7 6
10 10 C 1.50700 * 109.47226 * 179.97438 * 9 8 7
11 11 H 1.07999 * 119.99993 * 359.97438 * 10 9 8
12 12 C 1.37871 * 119.99942 * 179.97438 * 10 9 8
13 13 N 1.31518 * 120.00105 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 119.99881 * 179.97438 * 12 10 9
15 15 H 1.48494 * 109.47080 * 60.00593 * 14 12 10
16 16 H 1.48506 * 109.46894 * 180.02562 * 14 12 10
17 17 H 1.48504 * 109.47419 * 299.99873 * 14 12 10
18 18 C 1.53776 * 113.68713 * 196.41878 * 4 2 1
19 19 C 1.53781 * 87.08188 * 89.12902 * 18 4 2
20 20 C 1.53778 * 87.08085 * 25.43012 * 19 18 4
21 21 H 1.09008 * 109.46642 * 308.44362 * 1 2 3
22 22 H 1.09005 * 109.47110 * 68.43843 * 1 2 3
23 23 H 1.08996 * 109.47434 * 188.44474 * 1 2 3
24 24 H 1.09002 * 109.47249 * 288.82511 * 5 4 2
25 25 H 1.08998 * 109.47443 * 168.82016 * 5 4 2
26 26 H 1.00901 * 110.99826 * 56.04558 * 6 5 4
27 27 H 1.08998 * 109.47395 * 59.99830 * 7 6 5
28 28 H 1.09005 * 109.46979 * 299.99873 * 7 6 5
29 29 H 1.09000 * 109.47035 * 299.99203 * 8 7 6
30 30 H 1.08998 * 109.47328 * 59.99580 * 8 7 6
31 31 H 1.09000 * 109.46652 * 299.99634 * 9 8 7
32 32 H 1.08998 * 109.47179 * 59.99685 * 9 8 7
33 33 H 0.96996 * 119.99847 * 179.97438 * 13 12 10
34 34 H 1.09006 * 113.61217 * 203.67775 * 18 4 2
35 35 H 1.08995 * 113.61719 * 334.57601 * 18 4 2
36 36 H 1.09001 * 113.60902 * 270.87919 * 19 18 4
37 37 H 1.08995 * 113.68879 * 139.98828 * 19 18 4
38 38 H 1.08996 * 113.61542 * 220.02058 * 20 19 18
39 39 H 1.08997 * 113.69254 * 89.12684 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.2877 1.3397 0.0000
4 6 2.2221 -0.7855 1.5834
5 6 1.7784 -2.2481 1.6528
6 7 2.2241 -2.9530 0.4433
7 6 1.8143 -4.3633 0.4748
8 6 2.2958 -5.0628 -0.7979
9 6 1.8696 -6.5319 -0.7649
10 6 2.3434 -7.2207 -2.0188
11 1 2.8930 -6.6660 -2.7648
12 6 2.0750 -8.5589 -2.2135
13 7 1.4052 -9.2343 -1.3052
14 14 2.6616 -9.4126 -3.7680
15 1 4.1418 -9.3278 -3.8508
16 1 2.2480 -10.8385 -3.7359
17 1 2.0607 -8.7500 -4.9535
18 6 3.6772 -0.5615 2.0274
19 6 3.1841 0.7158 2.7276
20 6 1.8032 0.0440 2.8086
21 1 -0.3633 0.6390 0.8050
22 1 -0.3633 0.3777 -0.9558
23 1 -0.3634 -1.0165 0.1509
24 1 0.6915 -2.2953 1.7210
25 1 2.2184 -2.7201 2.5312
26 1 3.2223 -2.8687 0.3229
27 1 0.7277 -4.4248 0.5347
28 1 2.2543 -4.8502 1.3452
29 1 1.8561 -4.5761 -1.6685
30 1 3.3825 -5.0013 -0.8574
31 1 2.3097 -7.0183 0.1057
32 1 0.7831 -6.5937 -0.7052
33 1 1.2161 -10.1757 -1.4424
34 1 4.0458 -1.3222 2.7156
35 1 4.3613 -0.3700 1.2008
36 1 3.2033 1.5989 2.0889
37 1 3.6441 0.8871 3.7007
38 1 0.9745 0.7244 2.6127
39 1 1.6580 -0.5513 3.7100
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000393696027.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:15:22
Heat of formation + Delta-G solvation = -54.439342 kcal
Electronic energy + Delta-G solvation = -17435.323124 eV
Core-core repulsion = 14696.781738 eV
Total energy + Delta-G solvation = -2738.541387 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.09089 -37.40621 -36.59135 -35.21747 -32.97696 -30.00095 -29.20657 -27.05632
-26.61337 -24.22211 -23.05019 -21.73036 -21.01605 -18.39299 -18.02815 -17.35329
-16.54796 -16.45216 -16.23828 -15.79840 -15.24326 -15.14786 -14.73701 -14.40212
-14.15694 -13.79080 -13.59837 -13.48411 -13.31952 -13.16318 -12.77025 -12.72157
-12.48403 -12.40169 -12.24449 -12.08990 -11.55715 -11.37531 -11.30712 -11.19928
-10.88982 -10.80939 -10.45383 -9.36042 -8.89819 -8.11986 -6.21610 0.70521
1.46610 1.48973 1.56501 1.79338 2.48008 2.88807 3.16554 3.21891
3.55658 3.59616 3.78709 3.94110 4.28089 4.38321 4.48741 4.52129
4.56788 4.64374 4.69963 4.75525 4.85229 4.89744 4.92334 4.96028
5.12973 5.16626 5.20822 5.30082 5.32606 5.43083 5.65135 5.91991
5.99437 6.15947 6.38150 6.65136 6.97230 7.47588 8.99546
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.037037 B = 0.003574 C = 0.003474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 755.811797 B = 7832.253485 C = 8058.876166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.482 4.482
2 S 1.309 4.691
3 O -0.914 6.914
4 C -0.394 4.394
5 C 0.103 3.897
6 N -0.684 5.684
7 C 0.073 3.927
8 C -0.096 4.096
9 C 0.022 3.978
10 C -0.538 4.538
11 H 0.063 0.937
12 C -0.002 4.002
13 N -0.936 5.936
14 Si 0.960 3.040
15 H -0.267 1.267
16 H -0.287 1.287
17 H -0.266 1.266
18 C -0.097 4.097
19 C -0.160 4.160
20 C -0.115 4.115
21 H 0.070 0.930
22 H 0.113 0.887
23 H 0.131 0.869
24 H 0.083 0.917
25 H 0.041 0.959
26 H 0.350 0.650
27 H 0.068 0.932
28 H 0.021 0.979
29 H 0.064 0.936
30 H 0.052 0.948
31 H -0.013 1.013
32 H -0.008 1.008
33 H 0.261 0.739
34 H 0.101 0.899
35 H 0.073 0.927
36 H 0.071 0.929
37 H 0.080 0.920
38 H 0.053 0.947
39 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.944 16.941 6.320 18.106
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.641 4.641
2 S 1.509 4.491
3 O -0.910 6.910
4 C -0.492 4.492
5 C -0.027 4.027
6 N -0.316 5.316
7 C -0.056 4.056
8 C -0.134 4.134
9 C -0.016 4.016
10 C -0.576 4.576
11 H 0.081 0.919
12 C -0.199 4.199
13 N -0.577 5.577
14 Si 0.785 3.215
15 H -0.192 1.192
16 H -0.213 1.213
17 H -0.191 1.191
18 C -0.135 4.135
19 C -0.198 4.198
20 C -0.153 4.153
21 H 0.090 0.910
22 H 0.132 0.868
23 H 0.149 0.851
24 H 0.101 0.899
25 H 0.059 0.941
26 H 0.169 0.831
27 H 0.086 0.914
28 H 0.039 0.961
29 H 0.082 0.918
30 H 0.071 0.929
31 H 0.006 0.994
32 H 0.010 0.990
33 H 0.070 0.930
34 H 0.119 0.881
35 H 0.091 0.909
36 H 0.089 0.911
37 H 0.099 0.901
38 H 0.072 0.928
39 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 0.957 17.354 5.293 18.169
hybrid contribution -0.244 -0.002 1.874 1.890
sum 0.713 17.353 7.167 18.788
Atomic orbital electron populations
1.27542 1.20226 1.09080 1.07240 1.70824 0.86574 0.94541 0.97179
1.92901 1.75596 1.40367 1.82134 1.29016 1.03571 1.03492 1.13115
1.21488 1.00945 0.88572 0.91694 1.60476 1.20951 1.12344 1.37825
1.21814 1.00362 0.86952 0.96487 1.21405 0.99990 0.94576 0.97405
1.19006 0.94887 0.92748 0.94951 1.21747 1.35024 0.95217 1.05655
0.91920 1.25948 0.95436 0.98641 0.99903 1.70091 1.41775 1.09269
1.36549 0.85569 0.79030 0.77084 0.79777 1.19236 1.21316 1.19112
1.22605 0.92729 0.97708 1.00452 1.23021 0.97078 0.97882 1.01774
1.22857 0.96924 0.97626 0.97912 0.91034 0.86832 0.85085 0.89903
0.94124 0.83108 0.91369 0.96108 0.91772 0.92900 0.99422 0.98951
0.93009 0.88106 0.90869 0.91074 0.90125 0.92826 0.88237
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.48 -8.11 10.55 113.37 1.20 -6.92 16
2 S 1.31 25.41 12.61 -56.49 -0.71 24.70 16
3 O -0.91 -27.75 16.23 -148.98 -2.42 -30.17 16
4 C -0.39 -6.80 0.90 -10.27 -0.01 -6.81 16
5 C 0.10 1.76 5.04 86.30 0.44 2.20 16
6 N -0.68 -13.69 5.85 -513.88 -3.01 -16.70 16
7 C 0.07 2.02 5.69 86.30 0.49 2.51 16
8 C -0.10 -3.45 5.41 30.60 0.17 -3.28 16
9 C 0.02 1.08 4.97 29.85 0.15 1.23 16
10 C -0.54 -29.53 9.11 25.60 0.23 -29.30 16
11 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16
12 C 0.00 -0.11 5.46 84.65 0.46 0.35 16
13 N -0.94 -56.07 13.29 21.45 0.28 -55.79 16
14 Si 0.96 43.26 29.54 68.60 2.03 45.29 16
15 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16
16 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16
17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
18 C -0.10 -1.67 7.22 31.12 0.22 -1.44 16
19 C -0.16 -3.15 7.66 31.12 0.24 -2.91 16
20 C -0.11 -2.04 7.19 31.12 0.22 -1.82 16
21 H 0.07 1.28 7.59 -2.39 -0.02 1.27 16
22 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16
23 H 0.13 1.85 7.67 -2.39 -0.02 1.83 16
24 H 0.08 1.33 7.70 -2.39 -0.02 1.32 16
25 H 0.04 0.70 7.94 -2.39 -0.02 0.68 16
26 H 0.35 6.31 8.73 -89.69 -0.78 5.53 16
27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
28 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16
29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16
30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
31 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16
32 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16
33 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16
34 H 0.10 1.49 7.96 -2.38 -0.02 1.47 16
35 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16
36 H 0.07 1.80 6.66 -2.39 -0.02 1.78 16
37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
38 H 0.05 1.02 7.49 -2.39 -0.02 1.00 16
39 H 0.10 1.50 8.10 -2.39 -0.02 1.48 16
Total: -1.00 -69.44 327.16 0.21 -69.23
By element:
Atomic # 1 Polarization: 9.40 SS G_CDS: 0.22 Total: 9.62 kcal
Atomic # 6 Polarization: -50.00 SS G_CDS: 3.81 Total: -46.19 kcal
Atomic # 7 Polarization: -69.76 SS G_CDS: -2.72 Total: -72.48 kcal
Atomic # 8 Polarization: -27.75 SS G_CDS: -2.42 Total: -30.17 kcal
Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal
Atomic # 16 Polarization: 25.41 SS G_CDS: -0.71 Total: 24.70 kcal
Total: -69.44 0.21 -69.23 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000393696027.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.794 kcal
(2) G-P(sol) polarization free energy of solvation -69.442 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.648 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.234 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.439 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds