Wall clock time and date at job start Mon Mar 30 2020 04:18:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53001 * 109.46944 * 2 1
4 4 H 1.08998 * 109.47021 * 304.53364 * 3 2 1
5 5 C 1.50705 * 109.46806 * 184.53920 * 3 2 1
6 6 H 1.07990 * 120.00209 * 239.99381 * 5 3 2
7 7 C 1.37879 * 119.99741 * 60.00277 * 5 3 2
8 8 N 1.31511 * 120.00233 * 359.97438 * 7 5 3
9 9 Si 1.86803 * 119.99859 * 179.97438 * 7 5 3
10 10 H 1.48501 * 109.47320 * 59.99690 * 9 7 5
11 11 H 1.48500 * 109.47449 * 179.97438 * 9 7 5
12 12 H 1.48504 * 109.47084 * 299.99804 * 9 7 5
13 13 N 1.46895 * 109.47013 * 64.53997 * 3 2 1
14 14 C 1.46896 * 110.99964 * 243.71818 * 13 3 2
15 15 C 1.53008 * 109.47180 * 271.85574 * 14 13 3
16 16 S 1.81405 * 112.84708 * 294.65276 * 15 14 13
17 17 C 1.81400 * 103.00036 * 295.39485 * 16 15 14
18 18 O 1.42100 * 109.46580 * 179.00880 * 16 15 14
19 19 C 1.53782 * 113.61447 * 163.46029 * 15 14 13
20 20 C 1.53961 * 87.01837 * 220.04766 * 19 15 14
21 21 C 1.53782 * 113.61464 * 65.84809 * 15 14 13
22 22 H 1.09007 * 109.46935 * 176.86701 * 1 2 3
23 23 H 1.08993 * 109.46993 * 296.86257 * 1 2 3
24 24 H 1.08993 * 109.46973 * 56.86436 * 1 2 3
25 25 H 1.08997 * 109.47138 * 120.00041 * 2 1 3
26 26 H 1.09003 * 109.46864 * 239.99759 * 2 1 3
27 27 H 0.97004 * 120.00040 * 179.97438 * 8 7 5
28 28 H 1.00904 * 110.99599 * 119.77005 * 13 3 2
29 29 H 1.09005 * 109.47133 * 31.85078 * 14 13 3
30 30 H 1.09002 * 109.47457 * 151.85557 * 14 13 3
31 31 H 1.08993 * 109.47167 * 65.24617 * 17 16 15
32 32 H 1.08995 * 109.47058 * 185.25634 * 17 16 15
33 33 H 1.09002 * 109.46885 * 305.24964 * 17 16 15
34 34 H 1.09005 * 113.61033 * 334.56265 * 19 15 14
35 35 H 1.08999 * 113.61961 * 105.46646 * 19 15 14
36 36 H 1.08995 * 113.53405 * 270.81238 * 20 19 15
37 37 H 1.08999 * 113.74380 * 139.94450 * 20 19 15
38 38 H 1.08996 * 113.61679 * 254.53049 * 21 15 14
39 39 H 1.08998 * 113.61465 * 25.35130 * 21 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6118 1.9792 -0.8466
5 6 3.5428 1.4440 -0.1125
6 1 4.1422 1.8907 0.6669
7 6 4.1525 0.8751 -1.2105
8 7 3.4226 0.3308 -2.1595
9 14 6.0153 0.8775 -1.3503
10 1 6.5992 0.1467 -0.1970
11 1 6.4178 0.2096 -2.6141
12 1 6.5098 2.2778 -1.3507
13 7 1.6419 2.1026 1.2504
14 6 0.7253 3.2199 0.9872
15 6 1.5338 4.4943 0.7354
16 16 2.4589 5.0418 2.1966
17 6 1.1468 5.4591 3.3776
18 8 3.1988 6.2123 1.8775
19 6 0.7233 5.6154 0.0638
20 6 1.9786 5.9090 -0.7778
21 6 2.3814 4.4429 -0.5467
22 1 -0.3633 -1.0262 -0.0562
23 1 -0.3633 0.4643 0.9167
24 1 -0.3633 0.5617 -0.8605
25 1 1.8934 -0.5138 0.8900
26 1 1.8933 -0.5139 -0.8900
27 1 3.8516 -0.0690 -2.9322
28 1 2.4501 2.4124 1.7690
29 1 0.1200 2.9943 0.1092
30 1 0.0745 3.3669 1.8492
31 1 0.5976 4.5563 3.6446
32 1 1.5894 5.8937 4.2739
33 1 0.4649 6.1784 2.9239
34 1 -0.1207 5.2526 -0.5230
35 1 0.4520 6.4246 0.7419
36 1 2.6558 6.6261 -0.3138
37 1 1.7632 6.1436 -1.8202
38 1 3.4467 4.3069 -0.3608
39 1 1.9924 3.7580 -1.3001
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000393696499.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:18:00
Heat of formation + Delta-G solvation = -20.131917 kcal
Electronic energy + Delta-G solvation = -18922.437607 eV
Core-core repulsion = 16185.383901 eV
Total energy + Delta-G solvation = -2737.053705 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-38.87175 -35.93992 -35.20514 -32.44518 -30.95204 -28.99820 -27.58801 -25.40029
-25.17365 -22.86542 -21.76558 -20.11106 -19.01796 -17.03632 -16.61266 -15.80066
-15.04953 -14.73481 -14.55699 -13.94668 -13.71125 -13.53926 -13.44153 -12.69130
-12.52593 -12.40855 -12.08117 -11.85875 -11.60466 -11.51939 -11.29644 -11.10010
-10.80063 -10.75884 -10.67312 -10.40027 -10.10924 -9.99577 -9.66589 -9.52394
-9.35948 -8.85175 -8.40393 -7.90792 -7.26474 -6.02206 -4.10549 1.78673
2.86224 3.30664 3.35673 3.38836 4.00741 4.40067 4.70674 4.92380
5.15219 5.19881 5.26676 5.27492 5.37051 5.54887 5.77044 5.83189
5.98930 6.12094 6.15295 6.22213 6.34919 6.41563 6.49094 6.54889
6.65653 6.68746 6.81932 7.10057 7.19606 7.49839 7.55040 7.76954
7.99739 8.19719 8.35038 8.64553 9.01263 9.55685 11.01147
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.019276 B = 0.008389 C = 0.007070
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1452.257559 B = 3336.713086 C = 3959.315842
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.107 4.107
3 C 0.214 3.786
4 H 0.024 0.976
5 C -0.529 4.529
6 H 0.058 0.942
7 C 0.068 3.932
8 N -0.885 5.885
9 Si 0.884 3.116
10 H -0.276 1.276
11 H -0.289 1.289
12 H -0.277 1.277
13 N -0.683 5.683
14 C 0.105 3.895
15 C -0.428 4.428
16 S 1.260 4.740
17 C -0.489 4.489
18 O -0.853 6.853
19 C -0.112 4.112
20 C -0.162 4.162
21 C -0.076 4.076
22 H 0.025 0.975
23 H 0.045 0.955
24 H 0.032 0.968
25 H 0.035 0.965
26 H 0.087 0.913
27 H 0.261 0.739
28 H 0.330 0.670
29 H 0.068 0.932
30 H 0.060 0.940
31 H 0.115 0.885
32 H 0.098 0.902
33 H 0.077 0.923
34 H 0.082 0.918
35 H 0.051 0.949
36 H 0.089 0.911
37 H 0.063 0.937
38 H 0.074 0.926
39 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.204 5.234 7.162 10.284
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.146 4.146
3 C 0.106 3.894
4 H 0.042 0.958
5 C -0.568 4.568
6 H 0.076 0.924
7 C -0.134 4.134
8 N -0.523 5.523
9 Si 0.712 3.288
10 H -0.201 1.201
11 H -0.214 1.214
12 H -0.203 1.203
13 N -0.313 5.313
14 C -0.027 4.027
15 C -0.528 4.528
16 S 1.458 4.542
17 C -0.647 4.647
18 O -0.849 6.849
19 C -0.151 4.151
20 C -0.200 4.200
21 C -0.114 4.114
22 H 0.044 0.956
23 H 0.064 0.936
24 H 0.052 0.948
25 H 0.054 0.946
26 H 0.106 0.894
27 H 0.071 0.929
28 H 0.149 0.851
29 H 0.086 0.914
30 H 0.078 0.922
31 H 0.134 0.866
32 H 0.117 0.883
33 H 0.096 0.904
34 H 0.101 0.899
35 H 0.070 0.930
36 H 0.107 0.893
37 H 0.082 0.918
38 H 0.093 0.907
39 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -4.704 4.747 7.248 9.859
hybrid contribution 0.184 2.226 -1.379 2.625
sum -4.520 6.973 5.869 10.173
Atomic orbital electron populations
1.21745 0.99612 0.98480 0.99866 1.21558 0.91523 0.99724 1.01771
1.19290 0.93742 0.91062 0.85269 0.95841 1.21532 0.91678 1.38051
1.05506 0.92409 1.24867 0.97707 0.95085 0.95771 1.69863 1.34879
1.38100 1.09501 0.86781 0.86280 0.78322 0.77406 1.20116 1.21448
1.20278 1.60991 1.20370 1.25735 1.24182 1.21736 0.94604 0.85906
1.00435 1.29771 1.07845 1.03941 1.11243 1.70474 0.86859 1.06611
0.90212 1.27646 1.15680 1.08559 1.12774 1.93038 1.57073 1.52207
1.82554 1.22803 0.97436 0.95940 0.98939 1.23191 0.97732 0.99017
1.00012 1.22467 0.99633 0.95155 0.94147 0.95613 0.93582 0.94846
0.94566 0.89430 0.92907 0.85125 0.91371 0.92220 0.86626 0.88319
0.90394 0.89918 0.93033 0.89253 0.91805 0.90686 0.88320
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.67 9.76 37.16 0.36 -2.31 16
2 C -0.11 -2.39 5.45 -26.73 -0.15 -2.53 16
3 C 0.21 4.68 1.28 -68.86 -0.09 4.59 16
4 H 0.02 0.57 5.42 -51.93 -0.28 0.29 16
5 C -0.53 -12.77 7.93 -34.44 -0.27 -13.04 16
6 H 0.06 1.35 7.33 -52.49 -0.38 0.97 16
7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16
8 N -0.89 -23.64 11.29 55.43 0.63 -23.01 16
9 Si 0.88 20.21 29.54 -169.99 -5.02 15.18 16
10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16
12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16
13 N -0.68 -12.10 6.06 -107.95 -0.65 -12.76 16
14 C 0.11 1.61 5.40 -3.82 -0.02 1.59 16
15 C -0.43 -6.55 0.79 -89.80 -0.07 -6.62 16
16 S 1.26 17.76 12.18 -107.50 -1.31 16.45 16
17 C -0.49 -5.47 10.40 101.05 1.05 -4.42 16
18 O -0.85 -16.40 16.23 -35.23 -0.57 -16.97 16
19 C -0.11 -1.67 7.21 -25.82 -0.19 -1.86 16
20 C -0.16 -2.71 7.66 -25.82 -0.20 -2.90 16
21 C -0.08 -1.37 5.65 -25.92 -0.15 -1.52 16
22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
23 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16
24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16
26 H 0.09 2.22 5.96 -51.93 -0.31 1.91 16
27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16
28 H 0.33 5.50 6.52 -39.29 -0.26 5.24 16
29 H 0.07 1.14 7.37 -51.93 -0.38 0.76 16
30 H 0.06 0.77 7.27 -51.93 -0.38 0.39 16
31 H 0.12 1.06 7.52 -51.93 -0.39 0.67 16
32 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16
33 H 0.08 0.92 7.37 -51.92 -0.38 0.53 16
34 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16
35 H 0.05 0.73 7.33 -51.93 -0.38 0.35 16
36 H 0.09 1.63 6.66 -51.93 -0.35 1.29 16
37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
38 H 0.07 1.49 8.01 -51.93 -0.42 1.07 16
39 H 0.10 1.98 6.40 -51.93 -0.33 1.65 16
LS Contribution 311.49 15.07 4.69 4.69
Total: -1.00 -29.00 311.49 -8.36 -37.35
By element:
Atomic # 1 Polarization: 12.74 SS G_CDS: -6.31 Total: 6.43 kcal
Atomic # 6 Polarization: -27.56 SS G_CDS: 0.19 Total: -27.37 kcal
Atomic # 7 Polarization: -35.74 SS G_CDS: -0.03 Total: -35.77 kcal
Atomic # 8 Polarization: -16.40 SS G_CDS: -0.57 Total: -16.97 kcal
Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal
Atomic # 16 Polarization: 17.76 SS G_CDS: -1.31 Total: 16.45 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -29.00 -8.36 -37.35 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000393696499.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.222 kcal
(2) G-P(sol) polarization free energy of solvation -28.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.132 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds