Wall clock time and date at job start Mon Mar 30 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.59006 * 2 1 4 4 C 1.54167 * 110.80279 * 123.08547 * 2 1 3 5 5 N 1.46947 * 104.00916 * 118.29125 * 4 2 1 6 6 C 1.29296 * 110.09264 * 0.39009 * 5 4 2 7 7 N 1.37658 * 122.87169 * 179.83911 * 6 5 4 8 8 C 1.46506 * 119.99555 * 359.89800 * 7 6 5 9 9 C 1.50695 * 109.47344 * 269.99833 * 8 7 6 10 10 H 1.08004 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00178 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00329 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99931 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47218 * 90.00053 * 13 11 9 15 15 H 1.48504 * 109.47154 * 330.00202 * 13 11 9 16 16 H 1.48491 * 109.47518 * 210.00259 * 13 11 9 17 17 C 1.39869 * 120.00470 * 179.89920 * 7 6 5 18 18 C 1.38883 * 120.07321 * 267.39575 * 17 7 6 19 19 C 1.38111 * 119.92793 * 179.74398 * 18 17 7 20 20 C 1.38282 * 120.07232 * 0.52611 * 19 18 17 21 21 C 1.38289 * 120.14453 * 359.72491 * 20 19 18 22 22 C 1.38105 * 120.06726 * 0.02562 * 21 20 19 23 23 N 1.36808 * 114.26309 * 359.57350 * 6 5 4 24 24 H 1.08994 * 109.46819 * 181.52665 * 1 2 3 25 25 H 1.08999 * 109.46541 * 301.52820 * 1 2 3 26 26 H 1.09004 * 109.46880 * 61.52823 * 1 2 3 27 27 H 1.08997 * 110.51767 * 237.14633 * 4 2 1 28 28 H 1.08999 * 110.51488 * 359.74017 * 4 2 1 29 29 H 1.08999 * 109.47040 * 149.99874 * 8 7 6 30 30 H 1.09002 * 109.47073 * 30.00366 * 8 7 6 31 31 H 0.97002 * 120.00177 * 180.02562 * 12 11 9 32 32 H 1.08001 * 120.03766 * 359.97438 * 18 17 7 33 33 H 1.08005 * 119.96330 * 180.23286 * 19 18 17 34 34 H 1.08001 * 119.92654 * 179.74545 * 20 19 18 35 35 H 1.07995 * 119.96356 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.03187 * 179.97438 * 22 21 20 37 37 H 0.96999 * 125.82267 * 180.26288 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0204 0.0000 4 6 2.0776 -0.7867 1.2075 5 7 2.8356 -1.8891 0.5997 6 6 2.7833 -1.8063 -0.6896 7 7 3.4080 -2.7073 -1.5221 8 6 4.1753 -3.8188 -0.9545 9 6 5.6071 -3.3920 -0.7575 10 1 5.9147 -2.3926 -1.0276 11 6 6.5244 -4.2773 -0.2324 12 7 7.7737 -3.9047 -0.0600 13 14 5.9922 -6.0057 0.2355 14 1 6.1608 -6.9086 -0.9315 15 1 4.5654 -5.9900 0.6470 16 1 6.8271 -6.4927 1.3628 17 6 3.3102 -2.5616 -2.9097 18 6 2.3047 -3.2165 -3.6091 19 6 2.2077 -3.0663 -4.9785 20 6 3.1168 -2.2737 -5.6548 21 6 4.1223 -1.6244 -4.9621 22 6 4.2217 -1.7663 -3.5920 23 7 2.0495 -0.7500 -1.1558 24 1 -0.3633 -1.0273 0.0274 25 1 -0.3632 0.5374 0.8760 26 1 -0.3633 0.4899 -0.9034 27 1 2.7309 -0.1558 1.8101 28 1 1.2589 -1.1757 1.8130 29 1 4.1401 -4.6695 -1.6351 30 1 3.7457 -4.1039 0.0059 31 1 8.4192 -4.5277 0.3091 32 1 1.5972 -3.8395 -3.0821 33 1 1.4237 -3.5723 -5.5225 34 1 3.0412 -2.1612 -6.7263 35 1 4.8310 -1.0064 -5.4933 36 1 5.0074 -1.2593 -3.0517 37 1 1.8973 -0.5322 -2.0887 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393830441.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:15 Heat of formation + Delta-G solvation = 59.637671 kcal Electronic energy + Delta-G solvation = -19356.035075 eV Core-core repulsion = 16519.289239 eV Total energy + Delta-G solvation = -2836.745836 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37732 -39.92481 -37.18165 -34.68543 -32.98081 -31.95834 -31.82387 -31.00881 -29.00431 -26.58230 -24.42636 -23.43414 -23.04809 -22.07448 -20.42196 -19.20982 -19.01760 -17.55583 -16.87582 -16.52175 -16.27681 -15.76560 -15.55069 -15.16817 -14.64806 -14.30115 -14.29324 -14.05370 -13.67724 -13.51309 -13.41467 -13.25832 -12.72389 -12.62832 -12.53970 -12.43981 -12.22962 -11.99984 -11.90702 -11.63590 -10.77838 -10.31156 -9.85565 -9.67617 -9.44509 -8.56035 -8.28653 -6.31162 0.34797 0.48430 1.32933 1.36861 1.48495 1.84754 2.10011 2.34649 2.83148 2.94427 3.06626 3.69305 4.06798 4.12114 4.14029 4.23915 4.29201 4.55863 4.57957 4.60233 4.67277 4.72371 4.78819 4.86126 4.95191 5.03487 5.08901 5.13665 5.32049 5.47345 5.49561 5.55461 5.59969 5.71688 5.89848 6.07898 6.31460 6.42052 6.67621 7.24492 7.30263 7.61631 8.88680 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.008975 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.064773 B = 3118.871866 C = 4520.069878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.115 3.885 3 H 0.088 0.912 4 C 0.044 3.956 5 N -0.677 5.677 6 C 0.605 3.395 7 N -0.565 5.565 8 C 0.259 3.741 9 C -0.519 4.519 10 H 0.024 0.976 11 C 0.011 3.989 12 N -0.948 5.948 13 Si 0.944 3.056 14 H -0.259 1.259 15 H -0.252 1.252 16 H -0.280 1.280 17 C 0.131 3.869 18 C -0.127 4.127 19 C -0.105 4.105 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.128 4.128 23 N -0.756 5.756 24 H 0.045 0.955 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.124 0.876 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.089 0.911 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.799 5.498 -9.855 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.008 3.992 3 H 0.106 0.894 4 C -0.087 4.087 5 N -0.421 5.421 6 C 0.242 3.758 7 N -0.282 5.282 8 C 0.137 3.863 9 C -0.558 4.558 10 H 0.042 0.958 11 C -0.186 4.186 12 N -0.589 5.589 13 Si 0.767 3.233 14 H -0.183 1.183 15 H -0.176 1.176 16 H -0.206 1.206 17 C 0.040 3.960 18 C -0.147 4.147 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.133 4.133 22 C -0.148 4.148 23 N -0.405 5.405 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.159 0.841 36 H 0.107 0.893 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -16.271 4.896 -9.003 19.230 hybrid contribution 0.471 0.131 -0.028 0.489 sum -15.801 5.027 -9.031 18.881 Atomic orbital electron populations 1.22020 0.92238 1.02043 1.03645 1.22194 0.95926 0.95534 0.85504 0.89402 1.22945 0.97057 0.91989 0.96756 1.74567 1.35136 1.28808 1.03606 1.19501 0.85368 0.82905 0.88027 1.43103 1.54618 1.28655 1.01863 1.19197 0.89222 0.84024 0.93853 1.21498 0.93872 0.98892 1.41539 0.95791 1.25765 0.94567 1.03321 0.94942 1.70054 1.04092 1.37749 1.47043 0.85764 0.79496 0.79229 0.78814 1.18331 1.17563 1.20594 1.17793 0.96652 0.99148 0.82384 1.21572 0.97660 0.99719 0.95712 1.21385 0.99971 0.98511 0.92507 1.21563 0.93888 0.95991 1.01437 1.21313 0.99373 1.00275 0.92293 1.21537 0.97850 0.99483 0.95964 1.45865 1.56728 1.28935 1.08989 0.93587 0.89273 0.91130 0.91642 0.90039 0.95251 0.94752 0.92490 0.85837 0.82361 0.82200 0.84053 0.89257 0.75008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.43 71.98 0.68 -2.08 16 2 C 0.11 3.11 4.41 45.24 0.20 3.31 16 3 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 4 C 0.04 1.50 7.70 86.69 0.67 2.16 16 5 N -0.68 -31.31 10.63 -347.62 -3.70 -35.00 16 6 C 0.60 25.79 8.15 261.23 2.13 27.91 16 7 N -0.57 -25.26 2.56 -523.41 -1.34 -26.59 16 8 C 0.26 13.38 4.29 85.63 0.37 13.75 16 9 C -0.52 -31.72 9.94 25.60 0.25 -31.47 16 10 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 11 C 0.01 0.69 5.47 84.66 0.46 1.15 16 12 N -0.95 -61.67 13.96 21.45 0.30 -61.37 16 13 Si 0.94 46.09 27.47 68.60 1.88 47.98 16 14 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.25 -11.79 6.54 99.48 0.65 -11.14 16 16 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 17 C 0.13 4.85 4.19 38.17 0.16 5.01 16 18 C -0.13 -3.71 9.97 22.39 0.22 -3.49 16 19 C -0.11 -2.26 10.04 22.25 0.22 -2.04 16 20 C -0.11 -2.27 10.04 22.29 0.22 -2.05 16 21 C -0.11 -3.00 10.04 22.25 0.22 -2.78 16 22 C -0.13 -4.63 9.97 22.39 0.22 -4.40 16 23 N -0.76 -24.53 5.96 -326.62 -1.95 -26.48 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 25 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.08 2.51 7.74 -2.39 -0.02 2.49 16 29 H 0.03 1.46 7.48 -2.39 -0.02 1.44 16 30 H 0.03 1.88 6.56 -2.39 -0.02 1.86 16 31 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 32 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 33 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.09 3.83 8.06 -2.91 -0.02 3.80 16 37 H 0.41 11.78 8.25 -92.71 -0.77 11.01 16 Total: -1.00 -76.78 312.37 1.48 -75.31 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.24 Total: 21.18 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.04 Total: 4.99 kcal Atomic # 7 Polarization: -142.76 SS G_CDS: -6.68 Total: -149.45 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.98 kcal Total: -76.78 1.48 -75.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393830441.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.943 kcal (2) G-P(sol) polarization free energy of solvation -76.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds