Wall clock time and date at job start Mon Mar 30 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47230 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47008 * 64.99881 * 12 11 10 14 14 C 1.46849 * 111.00214 * 66.04820 * 13 12 11 15 15 C 1.53035 * 109.52499 * 174.16120 * 14 13 12 16 16 C 1.53116 * 109.27852 * 59.17550 * 15 14 13 17 17 H 1.09003 * 109.52151 * 62.25618 * 16 15 14 18 18 O 1.42908 * 109.51859 * 182.43842 * 16 15 14 19 19 C 1.53115 * 109.16212 * 302.34465 * 16 15 14 20 20 H 1.08994 * 109.50584 * 297.67275 * 19 16 15 21 21 C 1.53006 * 109.50184 * 177.59488 * 19 16 15 22 22 O 1.42898 * 109.46975 * 175.00084 * 21 19 16 23 23 C 1.46845 * 111.00321 * 301.83513 * 13 12 11 24 24 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 27 27 H 1.09001 * 109.46918 * 299.99649 * 11 10 9 28 28 H 1.08999 * 109.46857 * 59.99535 * 11 10 9 29 29 H 1.08999 * 109.47305 * 185.00032 * 12 11 10 30 30 H 1.09004 * 109.47201 * 305.00192 * 12 11 10 31 31 H 1.09002 * 109.45921 * 294.17731 * 14 13 12 32 32 H 1.08998 * 109.45768 * 54.15160 * 14 13 12 33 33 H 1.08997 * 109.50407 * 179.12369 * 15 14 13 34 34 H 1.09003 * 109.50113 * 299.23334 * 15 14 13 35 35 H 0.96693 * 113.99977 * 299.99812 * 18 16 15 36 36 H 1.08999 * 109.47343 * 295.00246 * 21 19 16 37 37 H 1.08999 * 109.46868 * 54.99961 * 21 19 16 38 38 H 0.96702 * 113.99739 * 180.02562 * 22 21 19 39 39 H 1.09003 * 109.46380 * 305.85946 * 23 13 12 40 40 H 1.09000 * 109.46069 * 65.82472 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8755 -0.0011 12 6 2.6481 -5.9562 -0.0017 13 7 3.4083 -5.8883 1.2535 14 6 2.5625 -6.2419 2.4007 15 6 3.4185 -6.3023 3.6678 16 6 4.0788 -4.9400 3.8973 17 1 3.3093 -4.1839 4.0532 18 8 4.9243 -5.0069 5.0475 19 6 4.9150 -4.5734 2.6681 20 1 5.7090 -5.3083 2.5358 21 6 5.5303 -3.1863 2.8642 22 8 6.4027 -2.8934 1.7710 23 6 4.0156 -4.5631 1.4300 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 0.9448 -4.9828 0.8887 28 1 0.9453 -4.9822 -0.8913 29 1 2.1822 -6.9374 -0.0917 30 1 3.3217 -5.7952 -0.8435 31 1 1.7841 -5.4889 2.5238 32 1 2.1025 -7.2146 2.2266 33 1 2.7878 -6.5496 4.5217 34 1 4.1886 -7.0649 3.5508 35 1 4.4606 -5.2398 5.8634 36 1 4.7372 -2.4397 2.9063 37 1 6.0961 -3.1682 3.7956 38 1 6.8292 -2.0275 1.8293 39 1 4.6108 -4.3163 0.5508 40 1 3.2304 -3.8179 1.5577 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396885253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:17 Heat of formation + Delta-G solvation = -150.172827 kcal Electronic energy + Delta-G solvation = -20994.691000 eV Core-core repulsion = 17809.245427 eV Total energy + Delta-G solvation = -3185.445573 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.60686 -37.34357 -36.28078 -35.70494 -32.90815 -32.24077 -31.08653 -28.42857 -26.83578 -25.34641 -23.64173 -22.35987 -22.17911 -20.69430 -19.48647 -17.28113 -17.03737 -16.45611 -15.79499 -15.71185 -15.15892 -15.07058 -14.44392 -14.25659 -13.86916 -13.76638 -13.18502 -13.00674 -12.88997 -12.43271 -12.02814 -11.78838 -11.71333 -11.30713 -11.18982 -10.99424 -10.84521 -10.80688 -10.63437 -10.50677 -10.14515 -10.08991 -9.77458 -9.55657 -9.13437 -8.86380 -8.26557 -7.75155 -6.15519 -4.17222 3.25009 3.32061 3.38091 4.12655 4.24942 4.33217 4.42595 4.79887 4.91042 5.13602 5.20796 5.21203 5.27931 5.53287 5.56101 5.60508 5.67487 5.71715 5.79375 5.87590 5.92031 6.00456 6.02838 6.13785 6.19610 6.30413 6.37415 6.61604 6.87243 7.04235 7.35443 7.41707 7.45277 7.63972 7.75403 7.94744 8.09896 8.49853 8.96701 9.47964 10.96073 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.006739 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.278469 B = 4153.819604 C = 4977.794896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.192 3.808 10 O -0.384 6.384 11 C 0.022 3.978 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.051 3.949 15 C -0.142 4.142 16 C 0.108 3.892 17 H 0.057 0.943 18 O -0.567 6.567 19 C -0.074 4.074 20 H 0.082 0.918 21 C 0.085 3.915 22 O -0.570 6.570 23 C 0.059 3.941 24 H 0.263 0.737 25 H 0.004 0.996 26 H 0.001 0.999 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.373 0.627 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.376 0.624 39 H 0.086 0.914 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -10.864 7.556 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.086 0.914 9 C 0.118 3.882 10 O -0.304 6.304 11 C -0.057 4.057 12 C -0.068 4.068 13 N -0.260 5.260 14 C -0.077 4.077 15 C -0.181 4.181 16 C 0.049 3.951 17 H 0.075 0.925 18 O -0.373 6.373 19 C -0.093 4.093 20 H 0.100 0.900 21 C 0.007 3.993 22 O -0.375 6.375 23 C -0.067 4.067 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.222 0.778 39 H 0.105 0.895 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.667 -11.496 6.886 14.968 hybrid contribution -1.121 1.854 0.640 2.259 sum 5.545 -9.642 7.526 13.430 Atomic orbital electron populations 1.69973 1.06130 1.27044 1.50682 1.24953 0.94940 0.99439 0.95171 0.86322 0.80123 0.82688 0.77646 1.19369 1.20813 1.20902 1.21086 0.94082 0.89217 1.50585 0.91384 1.20203 0.88901 0.83924 0.95211 1.87994 1.34910 1.12888 1.94595 1.23019 0.96282 0.86942 0.99423 1.22244 0.94899 0.96765 0.92912 1.62179 1.32256 1.29999 1.01613 1.22040 0.94590 1.00496 0.90613 1.22238 0.99902 0.98425 0.97494 1.21870 0.91840 0.95868 0.85523 0.92518 1.86524 1.39030 1.93253 1.18455 1.21153 0.98156 0.96576 0.93378 0.89989 1.22104 0.92597 0.96119 0.88530 1.86462 1.63462 1.40272 1.47280 1.22392 0.98033 0.89420 0.96900 0.92724 0.97836 0.98075 0.94608 0.94147 0.90253 0.89938 0.94318 0.90969 0.91560 0.90457 0.78008 0.93299 0.93359 0.77770 0.89520 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.74 9.43 -34.44 -0.32 -15.06 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.19 5.16 5.69 36.01 0.20 5.36 16 10 O -0.38 -8.86 6.77 -35.23 -0.24 -9.10 16 11 C 0.02 0.41 5.75 37.16 0.21 0.62 16 12 C 0.06 0.92 5.93 -3.83 -0.02 0.89 16 13 N -0.54 -8.40 4.86 -234.68 -1.14 -9.54 16 14 C 0.05 0.69 5.06 -3.83 -0.02 0.67 16 15 C -0.14 -1.71 5.72 -26.65 -0.15 -1.86 16 16 C 0.11 1.46 2.95 -26.61 -0.08 1.39 16 17 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 18 O -0.57 -7.01 12.68 -35.23 -0.45 -7.46 16 19 C -0.07 -1.17 2.32 -90.54 -0.21 -1.38 16 20 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 21 C 0.08 1.34 6.37 37.16 0.24 1.57 16 22 O -0.57 -9.20 13.22 -35.23 -0.47 -9.66 16 23 C 0.06 1.06 3.39 -3.84 -0.01 1.05 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 26 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 27 H 0.04 0.64 6.46 -51.93 -0.34 0.31 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.04 0.58 6.65 -51.93 -0.35 0.24 16 32 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.37 2.92 9.08 45.56 0.41 3.33 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.71 7.62 -51.93 -0.40 0.31 16 38 H 0.38 4.40 9.12 45.56 0.42 4.82 16 39 H 0.09 1.74 7.83 -51.93 -0.41 1.33 16 40 H 0.08 1.72 5.58 -51.93 -0.29 1.43 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -32.52 317.61 -7.18 -39.70 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.13 Total: 5.89 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.26 Total: -5.25 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.40 Total: -35.49 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.15 Total: -26.22 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.52 -7.18 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396885253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.471 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds