Wall clock time and date at job start Mon Mar 30 2020 05:33:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86803 * 119.99951 * 2 1
4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1
6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1
7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1
10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 2
11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7
12 12 C 1.52995 * 109.47230 * 179.97438 * 11 10 9
13 13 N 1.46898 * 109.47008 * 64.99881 * 12 11 10
14 14 C 1.46849 * 111.00214 * 66.04820 * 13 12 11
15 15 C 1.53035 * 109.52499 * 174.16120 * 14 13 12
16 16 C 1.53116 * 109.27852 * 59.17550 * 15 14 13
17 17 H 1.09003 * 109.52151 * 62.25618 * 16 15 14
18 18 O 1.42908 * 109.51859 * 182.43842 * 16 15 14
19 19 C 1.53115 * 109.16212 * 302.34465 * 16 15 14
20 20 H 1.08994 * 109.50584 * 297.67275 * 19 16 15
21 21 C 1.53006 * 109.50184 * 177.59488 * 19 16 15
22 22 O 1.42898 * 109.46975 * 175.00084 * 21 19 16
23 23 C 1.46845 * 111.00321 * 301.83513 * 13 12 11
24 24 H 0.97000 * 120.00333 * 359.97438 * 1 2 3
25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2
26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2
27 27 H 1.09001 * 109.46918 * 299.99649 * 11 10 9
28 28 H 1.08999 * 109.46857 * 59.99535 * 11 10 9
29 29 H 1.08999 * 109.47305 * 185.00032 * 12 11 10
30 30 H 1.09004 * 109.47201 * 305.00192 * 12 11 10
31 31 H 1.09002 * 109.45921 * 294.17731 * 14 13 12
32 32 H 1.08998 * 109.45768 * 54.15160 * 14 13 12
33 33 H 1.08997 * 109.50407 * 179.12369 * 15 14 13
34 34 H 1.09003 * 109.50113 * 299.23334 * 15 14 13
35 35 H 0.96693 * 113.99977 * 299.99812 * 18 16 15
36 36 H 1.08999 * 109.47343 * 295.00246 * 21 19 16
37 37 H 1.08999 * 109.46868 * 54.99961 * 21 19 16
38 38 H 0.96702 * 113.99739 * 180.02562 * 22 21 19
39 39 H 1.09003 * 109.46380 * 305.85946 * 23 13 12
40 40 H 1.09000 * 109.46069 * 65.82472 * 23 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8905 2.3964 1.2126
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 8 2.1797 -3.5853 -0.0005
11 6 1.5652 -4.8755 -0.0011
12 6 2.6481 -5.9562 -0.0017
13 7 3.4083 -5.8883 1.2535
14 6 2.5625 -6.2419 2.4007
15 6 3.4185 -6.3023 3.6678
16 6 4.0788 -4.9400 3.8973
17 1 3.3093 -4.1839 4.0532
18 8 4.9243 -5.0069 5.0475
19 6 4.9150 -4.5734 2.6681
20 1 5.7090 -5.3083 2.5358
21 6 5.5303 -3.1863 2.8642
22 8 6.4027 -2.8934 1.7710
23 6 4.0156 -4.5631 1.4300
24 1 -0.4850 0.8400 0.0004
25 1 0.6241 -2.5568 -0.8903
26 1 0.6247 -2.5571 0.8897
27 1 0.9448 -4.9828 0.8887
28 1 0.9453 -4.9822 -0.8913
29 1 2.1822 -6.9374 -0.0917
30 1 3.3217 -5.7952 -0.8435
31 1 1.7841 -5.4889 2.5238
32 1 2.1025 -7.2146 2.2266
33 1 2.7878 -6.5496 4.5217
34 1 4.1886 -7.0649 3.5508
35 1 4.4606 -5.2398 5.8634
36 1 4.7372 -2.4397 2.9063
37 1 6.0961 -3.1682 3.7956
38 1 6.8292 -2.0275 1.8293
39 1 4.6108 -4.3163 0.5508
40 1 3.2304 -3.8179 1.5577
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396885253.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:17
Heat of formation + Delta-G solvation = -150.172827 kcal
Electronic energy + Delta-G solvation = -20994.691000 eV
Core-core repulsion = 17809.245427 eV
Total energy + Delta-G solvation = -3185.445573 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.60686 -37.34357 -36.28078 -35.70494 -32.90815 -32.24077 -31.08653 -28.42857
-26.83578 -25.34641 -23.64173 -22.35987 -22.17911 -20.69430 -19.48647 -17.28113
-17.03737 -16.45611 -15.79499 -15.71185 -15.15892 -15.07058 -14.44392 -14.25659
-13.86916 -13.76638 -13.18502 -13.00674 -12.88997 -12.43271 -12.02814 -11.78838
-11.71333 -11.30713 -11.18982 -10.99424 -10.84521 -10.80688 -10.63437 -10.50677
-10.14515 -10.08991 -9.77458 -9.55657 -9.13437 -8.86380 -8.26557 -7.75155
-6.15519 -4.17222 3.25009 3.32061 3.38091 4.12655 4.24942 4.33217
4.42595 4.79887 4.91042 5.13602 5.20796 5.21203 5.27931 5.53287
5.56101 5.60508 5.67487 5.71715 5.79375 5.87590 5.92031 6.00456
6.02838 6.13785 6.19610 6.30413 6.37415 6.61604 6.87243 7.04235
7.35443 7.41707 7.45277 7.63972 7.75403 7.94744 8.09896 8.49853
8.96701 9.47964 10.96073
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.018034 B = 0.006739 C = 0.005624
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1552.278469 B = 4153.819604 C = 4977.794896
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.056 3.944
3 Si 0.905 3.095
4 H -0.269 1.269
5 H -0.282 1.282
6 H -0.283 1.283
7 C -0.511 4.511
8 H 0.068 0.932
9 C 0.192 3.808
10 O -0.384 6.384
11 C 0.022 3.978
12 C 0.060 3.940
13 N -0.537 5.537
14 C 0.051 3.949
15 C -0.142 4.142
16 C 0.108 3.892
17 H 0.057 0.943
18 O -0.567 6.567
19 C -0.074 4.074
20 H 0.082 0.918
21 C 0.085 3.915
22 O -0.570 6.570
23 C 0.059 3.941
24 H 0.263 0.737
25 H 0.004 0.996
26 H 0.001 0.999
27 H 0.036 0.964
28 H 0.040 0.960
29 H 0.079 0.921
30 H 0.082 0.918
31 H 0.039 0.961
32 H 0.072 0.928
33 H 0.066 0.934
34 H 0.077 0.923
35 H 0.373 0.627
36 H 0.049 0.951
37 H 0.048 0.952
38 H 0.376 0.624
39 H 0.086 0.914
40 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.981 -10.864 7.556 14.522
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.145 4.145
3 Si 0.732 3.268
4 H -0.194 1.194
5 H -0.208 1.208
6 H -0.209 1.209
7 C -0.550 4.550
8 H 0.086 0.914
9 C 0.118 3.882
10 O -0.304 6.304
11 C -0.057 4.057
12 C -0.068 4.068
13 N -0.260 5.260
14 C -0.077 4.077
15 C -0.181 4.181
16 C 0.049 3.951
17 H 0.075 0.925
18 O -0.373 6.373
19 C -0.093 4.093
20 H 0.100 0.900
21 C 0.007 3.993
22 O -0.375 6.375
23 C -0.067 4.067
24 H 0.073 0.927
25 H 0.022 0.978
26 H 0.019 0.981
27 H 0.054 0.946
28 H 0.059 0.941
29 H 0.097 0.903
30 H 0.101 0.899
31 H 0.057 0.943
32 H 0.090 0.910
33 H 0.084 0.916
34 H 0.095 0.905
35 H 0.220 0.780
36 H 0.067 0.933
37 H 0.066 0.934
38 H 0.222 0.778
39 H 0.105 0.895
40 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 6.667 -11.496 6.886 14.968
hybrid contribution -1.121 1.854 0.640 2.259
sum 5.545 -9.642 7.526 13.430
Atomic orbital electron populations
1.69973 1.06130 1.27044 1.50682 1.24953 0.94940 0.99439 0.95171
0.86322 0.80123 0.82688 0.77646 1.19369 1.20813 1.20902 1.21086
0.94082 0.89217 1.50585 0.91384 1.20203 0.88901 0.83924 0.95211
1.87994 1.34910 1.12888 1.94595 1.23019 0.96282 0.86942 0.99423
1.22244 0.94899 0.96765 0.92912 1.62179 1.32256 1.29999 1.01613
1.22040 0.94590 1.00496 0.90613 1.22238 0.99902 0.98425 0.97494
1.21870 0.91840 0.95868 0.85523 0.92518 1.86524 1.39030 1.93253
1.18455 1.21153 0.98156 0.96576 0.93378 0.89989 1.22104 0.92597
0.96119 0.88530 1.86462 1.63462 1.40272 1.47280 1.22392 0.98033
0.89420 0.96900 0.92724 0.97836 0.98075 0.94608 0.94147 0.90253
0.89938 0.94318 0.90969 0.91560 0.90457 0.78008 0.93299 0.93359
0.77770 0.89520 0.89946
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16
2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16
4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
7 C -0.51 -14.74 9.43 -34.44 -0.32 -15.06 16
8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16
9 C 0.19 5.16 5.69 36.01 0.20 5.36 16
10 O -0.38 -8.86 6.77 -35.23 -0.24 -9.10 16
11 C 0.02 0.41 5.75 37.16 0.21 0.62 16
12 C 0.06 0.92 5.93 -3.83 -0.02 0.89 16
13 N -0.54 -8.40 4.86 -234.68 -1.14 -9.54 16
14 C 0.05 0.69 5.06 -3.83 -0.02 0.67 16
15 C -0.14 -1.71 5.72 -26.65 -0.15 -1.86 16
16 C 0.11 1.46 2.95 -26.61 -0.08 1.39 16
17 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
18 O -0.57 -7.01 12.68 -35.23 -0.45 -7.46 16
19 C -0.07 -1.17 2.32 -90.54 -0.21 -1.38 16
20 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16
21 C 0.08 1.34 6.37 37.16 0.24 1.57 16
22 O -0.57 -9.20 13.22 -35.23 -0.47 -9.66 16
23 C 0.06 1.06 3.39 -3.84 -0.01 1.05 16
24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16
25 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16
26 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16
27 H 0.04 0.64 6.46 -51.93 -0.34 0.31 16
28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16
29 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16
30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16
31 H 0.04 0.58 6.65 -51.93 -0.35 0.24 16
32 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16
33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
35 H 0.37 2.92 9.08 45.56 0.41 3.33 16
36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16
37 H 0.05 0.71 7.62 -51.93 -0.40 0.31 16
38 H 0.38 4.40 9.12 45.56 0.42 4.82 16
39 H 0.09 1.74 7.83 -51.93 -0.41 1.33 16
40 H 0.08 1.72 5.58 -51.93 -0.29 1.43 16
LS Contribution 317.61 15.07 4.79 4.79
Total: -1.00 -32.52 317.61 -7.18 -39.70
By element:
Atomic # 1 Polarization: 11.02 SS G_CDS: -5.13 Total: 5.89 kcal
Atomic # 6 Polarization: -4.98 SS G_CDS: -0.26 Total: -5.25 kcal
Atomic # 7 Polarization: -35.08 SS G_CDS: -0.40 Total: -35.49 kcal
Atomic # 8 Polarization: -25.07 SS G_CDS: -1.15 Total: -26.22 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -32.52 -7.18 -39.70 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396885253.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -110.471 kcal
(2) G-P(sol) polarization free energy of solvation -32.519 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.990 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds