Wall clock time and date at job start Mon Mar 30 2020 05:33:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86803 * 119.99951 * 2 1
4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1
6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1
7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1
10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 2
11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7
12 12 C 1.52995 * 109.47230 * 179.97438 * 11 10 9
13 13 N 1.46898 * 109.47008 * 64.99881 * 12 11 10
14 14 C 1.46849 * 111.00214 * 66.04820 * 13 12 11
15 15 C 1.53035 * 109.52499 * 174.16120 * 14 13 12
16 16 C 1.53116 * 109.27852 * 59.17550 * 15 14 13
17 17 H 1.09003 * 109.52151 * 62.25618 * 16 15 14
18 18 O 1.42908 * 109.51859 * 182.43842 * 16 15 14
19 19 C 1.53115 * 109.16212 * 302.34465 * 16 15 14
20 20 H 1.08994 * 109.50584 * 297.67275 * 19 16 15
21 21 C 1.53006 * 109.50184 * 177.59488 * 19 16 15
22 22 O 1.42898 * 109.46975 * 175.00084 * 21 19 16
23 23 C 1.46845 * 111.00321 * 301.83513 * 13 12 11
24 24 H 0.97000 * 120.00333 * 359.97438 * 1 2 3
25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2
26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2
27 27 H 1.09001 * 109.46918 * 299.99649 * 11 10 9
28 28 H 1.08999 * 109.46857 * 59.99535 * 11 10 9
29 29 H 1.08999 * 109.47305 * 185.00032 * 12 11 10
30 30 H 1.09004 * 109.47201 * 305.00192 * 12 11 10
31 31 H 1.09002 * 109.45921 * 294.17731 * 14 13 12
32 32 H 1.08998 * 109.45768 * 54.15160 * 14 13 12
33 33 H 1.08997 * 109.50407 * 179.12369 * 15 14 13
34 34 H 1.09003 * 109.50113 * 299.23334 * 15 14 13
35 35 H 0.96693 * 113.99977 * 299.99812 * 18 16 15
36 36 H 1.08999 * 109.47343 * 295.00246 * 21 19 16
37 37 H 1.08999 * 109.46868 * 54.99961 * 21 19 16
38 38 H 0.96702 * 113.99739 * 180.02562 * 22 21 19
39 39 H 1.09003 * 109.46380 * 305.85946 * 23 13 12
40 40 H 1.09000 * 109.46069 * 65.82472 * 23 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8905 2.3964 1.2126
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 8 2.1797 -3.5853 -0.0005
11 6 1.5652 -4.8755 -0.0011
12 6 2.6481 -5.9562 -0.0017
13 7 3.4083 -5.8883 1.2535
14 6 2.5625 -6.2419 2.4007
15 6 3.4185 -6.3023 3.6678
16 6 4.0788 -4.9400 3.8973
17 1 3.3093 -4.1839 4.0532
18 8 4.9243 -5.0069 5.0475
19 6 4.9150 -4.5734 2.6681
20 1 5.7090 -5.3083 2.5358
21 6 5.5303 -3.1863 2.8642
22 8 6.4027 -2.8934 1.7710
23 6 4.0156 -4.5631 1.4300
24 1 -0.4850 0.8400 0.0004
25 1 0.6241 -2.5568 -0.8903
26 1 0.6247 -2.5571 0.8897
27 1 0.9448 -4.9828 0.8887
28 1 0.9453 -4.9822 -0.8913
29 1 2.1822 -6.9374 -0.0917
30 1 3.3217 -5.7952 -0.8435
31 1 1.7841 -5.4889 2.5238
32 1 2.1025 -7.2146 2.2266
33 1 2.7878 -6.5496 4.5217
34 1 4.1886 -7.0649 3.5508
35 1 4.4606 -5.2398 5.8634
36 1 4.7372 -2.4397 2.9063
37 1 6.0961 -3.1682 3.7956
38 1 6.8292 -2.0275 1.8293
39 1 4.6108 -4.3163 0.5508
40 1 3.2304 -3.8179 1.5577
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000396885253.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:17
Heat of formation + Delta-G solvation = -178.511121 kcal
Electronic energy + Delta-G solvation = -20995.919840 eV
Core-core repulsion = 17809.245427 eV
Total energy + Delta-G solvation = -3186.674414 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.85037 -38.83376 -37.51479 -37.11373 -34.95687 -33.60847 -32.25548 -30.08247
-28.70337 -26.59771 -25.07042 -24.39273 -23.37590 -21.98433 -20.74652 -18.64011
-18.34690 -18.25400 -17.46392 -17.24040 -16.64413 -16.38494 -16.15839 -15.49469
-15.39131 -15.12122 -14.70306 -14.37891 -14.07610 -13.92627 -13.46636 -13.36571
-13.14286 -12.85345 -12.80642 -12.61506 -12.46618 -12.27566 -12.08042 -11.97921
-11.77281 -11.29866 -11.27981 -10.90778 -10.87114 -10.72945 -10.21739 -9.14532
-8.35072 -6.46809 1.36638 1.37791 1.52560 2.31352 2.89480 2.98966
3.15095 3.26222 3.35539 3.79919 3.99526 4.03904 4.08864 4.20254
4.25681 4.34479 4.47771 4.50989 4.53515 4.62384 4.69578 4.78435
4.81530 4.83503 4.93979 5.00416 5.07207 5.13205 5.14726 5.28294
5.44117 5.52760 5.93467 6.09275 6.18918 6.50049 6.78688 6.87541
6.89808 7.25094 8.77446
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.018034 B = 0.006739 C = 0.005624
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1552.278469 B = 4153.819604 C = 4977.794896
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.007 3.993
3 Si 0.978 3.022
4 H -0.263 1.263
5 H -0.272 1.272
6 H -0.271 1.271
7 C -0.539 4.539
8 H 0.060 0.940
9 C 0.209 3.791
10 O -0.391 6.391
11 C 0.015 3.985
12 C 0.066 3.934
13 N -0.536 5.536
14 C 0.047 3.953
15 C -0.134 4.134
16 C 0.114 3.886
17 H 0.045 0.955
18 O -0.574 6.574
19 C -0.073 4.073
20 H 0.075 0.925
21 C 0.087 3.913
22 O -0.588 6.588
23 C 0.074 3.926
24 H 0.270 0.730
25 H -0.019 1.019
26 H -0.019 1.019
27 H 0.040 0.960
28 H 0.046 0.954
29 H 0.119 0.881
30 H 0.075 0.925
31 H 0.021 0.979
32 H 0.100 0.900
33 H 0.097 0.903
34 H 0.080 0.920
35 H 0.395 0.605
36 H 0.032 0.968
37 H 0.064 0.936
38 H 0.393 0.607
39 H 0.056 0.944
40 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.610 -11.609 8.602 15.889
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.191 4.191
3 Si 0.800 3.200
4 H -0.187 1.187
5 H -0.198 1.198
6 H -0.196 1.196
7 C -0.577 4.577
8 H 0.078 0.922
9 C 0.134 3.866
10 O -0.311 6.311
11 C -0.064 4.064
12 C -0.062 4.062
13 N -0.259 5.259
14 C -0.080 4.080
15 C -0.172 4.172
16 C 0.055 3.945
17 H 0.063 0.937
18 O -0.383 6.383
19 C -0.092 4.092
20 H 0.094 0.906
21 C 0.009 3.991
22 O -0.396 6.396
23 C -0.054 4.054
24 H 0.079 0.921
25 H -0.001 1.001
26 H -0.001 1.001
27 H 0.058 0.942
28 H 0.064 0.936
29 H 0.137 0.863
30 H 0.094 0.906
31 H 0.039 0.961
32 H 0.118 0.882
33 H 0.116 0.884
34 H 0.098 0.902
35 H 0.245 0.755
36 H 0.050 0.950
37 H 0.082 0.918
38 H 0.242 0.758
39 H 0.075 0.925
40 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 7.295 -12.262 7.952 16.334
hybrid contribution -1.331 2.009 0.328 2.432
sum 5.965 -10.252 8.280 14.465
Atomic orbital electron populations
1.70074 1.07743 1.28508 1.50773 1.25921 0.95885 1.03272 0.94025
0.85215 0.78872 0.77588 0.78281 1.18667 1.19771 1.19629 1.21352
0.93912 0.90667 1.51760 0.92157 1.19775 0.88700 0.85128 0.93020
1.88012 1.34471 1.14025 1.94621 1.23348 0.97697 0.85502 0.99819
1.22339 0.93876 0.97264 0.92741 1.62225 1.32852 1.28142 1.02650
1.22194 0.94201 1.01178 0.90464 1.22211 1.00036 0.97188 0.97768
1.21665 0.91051 0.96659 0.85138 0.93689 1.86470 1.39292 1.93408
1.19125 1.21126 0.97785 0.96459 0.93853 0.90617 1.22095 0.92279
0.95692 0.89047 1.86427 1.63612 1.41815 1.47739 1.22049 0.96937
0.89723 0.96699 0.92107 1.00113 1.00144 0.94226 0.93610 0.86299
0.90638 0.96059 0.88207 0.88419 0.90154 0.75473 0.95003 0.91833
0.75792 0.92544 0.93412
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16
2 C 0.01 0.42 5.46 84.65 0.46 0.89 16
3 Si 0.98 44.36 29.54 68.60 2.03 46.39 16
4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16
5 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16
6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16
7 C -0.54 -32.04 9.43 25.60 0.24 -31.79 16
8 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16
9 C 0.21 11.73 5.69 71.24 0.41 12.13 16
10 O -0.39 -18.80 6.77 -148.98 -1.01 -19.81 16
11 C 0.01 0.54 5.75 71.98 0.41 0.96 16
12 C 0.07 1.94 5.93 86.30 0.51 2.45 16
13 N -0.54 -16.27 4.86 -896.38 -4.35 -20.63 16
14 C 0.05 1.19 5.06 86.32 0.44 1.62 16
15 C -0.13 -2.85 5.72 30.64 0.18 -2.68 16
16 C 0.11 2.95 2.95 30.67 0.09 3.04 16
17 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16
18 O -0.57 -12.91 12.68 -148.98 -1.89 -14.80 16
19 C -0.07 -2.32 2.32 -10.74 -0.02 -2.35 16
20 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16
21 C 0.09 2.77 6.37 71.98 0.46 3.23 16
22 O -0.59 -19.19 13.22 -148.98 -1.97 -21.16 16
23 C 0.07 2.69 3.39 86.33 0.29 2.99 16
24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16
25 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16
26 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16
27 H 0.04 1.43 6.46 -2.39 -0.02 1.42 16
28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16
29 H 0.12 2.61 8.06 -2.39 -0.02 2.59 16
30 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16
31 H 0.02 0.62 6.65 -2.39 -0.02 0.60 16
32 H 0.10 1.98 8.06 -2.39 -0.02 1.96 16
33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
35 H 0.40 5.01 9.08 -74.06 -0.67 4.34 16
36 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16
37 H 0.06 1.81 7.62 -2.39 -0.02 1.79 16
38 H 0.39 9.19 9.12 -74.06 -0.68 8.52 16
39 H 0.06 2.36 7.83 -2.39 -0.02 2.34 16
40 H 0.05 2.10 5.58 -2.39 -0.01 2.08 16
Total: -1.00 -71.47 317.61 -3.76 -75.23
By element:
Atomic # 1 Polarization: 20.36 SS G_CDS: -0.32 Total: 20.05 kcal
Atomic # 6 Polarization: -12.97 SS G_CDS: 3.46 Total: -9.51 kcal
Atomic # 7 Polarization: -72.32 SS G_CDS: -4.07 Total: -76.39 kcal
Atomic # 8 Polarization: -50.90 SS G_CDS: -4.87 Total: -55.77 kcal
Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal
Total: -71.47 -3.76 -75.23 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396885253.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -103.278 kcal
(2) G-P(sol) polarization free energy of solvation -71.471 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.749 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) -178.511 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds