Wall clock time and date at job start Mon Mar 30 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47230 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47008 * 64.99881 * 12 11 10 14 14 C 1.46849 * 111.00214 * 66.04820 * 13 12 11 15 15 C 1.53035 * 109.52499 * 174.16120 * 14 13 12 16 16 C 1.53116 * 109.27852 * 59.17550 * 15 14 13 17 17 H 1.09003 * 109.52151 * 62.25618 * 16 15 14 18 18 O 1.42908 * 109.51859 * 182.43842 * 16 15 14 19 19 C 1.53115 * 109.16212 * 302.34465 * 16 15 14 20 20 H 1.08994 * 109.50584 * 297.67275 * 19 16 15 21 21 C 1.53006 * 109.50184 * 177.59488 * 19 16 15 22 22 O 1.42898 * 109.46975 * 175.00084 * 21 19 16 23 23 C 1.46845 * 111.00321 * 301.83513 * 13 12 11 24 24 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 27 27 H 1.09001 * 109.46918 * 299.99649 * 11 10 9 28 28 H 1.08999 * 109.46857 * 59.99535 * 11 10 9 29 29 H 1.08999 * 109.47305 * 185.00032 * 12 11 10 30 30 H 1.09004 * 109.47201 * 305.00192 * 12 11 10 31 31 H 1.09002 * 109.45921 * 294.17731 * 14 13 12 32 32 H 1.08998 * 109.45768 * 54.15160 * 14 13 12 33 33 H 1.08997 * 109.50407 * 179.12369 * 15 14 13 34 34 H 1.09003 * 109.50113 * 299.23334 * 15 14 13 35 35 H 0.96693 * 113.99977 * 299.99812 * 18 16 15 36 36 H 1.08999 * 109.47343 * 295.00246 * 21 19 16 37 37 H 1.08999 * 109.46868 * 54.99961 * 21 19 16 38 38 H 0.96702 * 113.99739 * 180.02562 * 22 21 19 39 39 H 1.09003 * 109.46380 * 305.85946 * 23 13 12 40 40 H 1.09000 * 109.46069 * 65.82472 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8755 -0.0011 12 6 2.6481 -5.9562 -0.0017 13 7 3.4083 -5.8883 1.2535 14 6 2.5625 -6.2419 2.4007 15 6 3.4185 -6.3023 3.6678 16 6 4.0788 -4.9400 3.8973 17 1 3.3093 -4.1839 4.0532 18 8 4.9243 -5.0069 5.0475 19 6 4.9150 -4.5734 2.6681 20 1 5.7090 -5.3083 2.5358 21 6 5.5303 -3.1863 2.8642 22 8 6.4027 -2.8934 1.7710 23 6 4.0156 -4.5631 1.4300 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 0.9448 -4.9828 0.8887 28 1 0.9453 -4.9822 -0.8913 29 1 2.1822 -6.9374 -0.0917 30 1 3.3217 -5.7952 -0.8435 31 1 1.7841 -5.4889 2.5238 32 1 2.1025 -7.2146 2.2266 33 1 2.7878 -6.5496 4.5217 34 1 4.1886 -7.0649 3.5508 35 1 4.4606 -5.2398 5.8634 36 1 4.7372 -2.4397 2.9063 37 1 6.0961 -3.1682 3.7956 38 1 6.8292 -2.0275 1.8293 39 1 4.6108 -4.3163 0.5508 40 1 3.2304 -3.8179 1.5577 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396885253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:17 Heat of formation + Delta-G solvation = -178.511121 kcal Electronic energy + Delta-G solvation = -20995.919840 eV Core-core repulsion = 17809.245427 eV Total energy + Delta-G solvation = -3186.674414 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85037 -38.83376 -37.51479 -37.11373 -34.95687 -33.60847 -32.25548 -30.08247 -28.70337 -26.59771 -25.07042 -24.39273 -23.37590 -21.98433 -20.74652 -18.64011 -18.34690 -18.25400 -17.46392 -17.24040 -16.64413 -16.38494 -16.15839 -15.49469 -15.39131 -15.12122 -14.70306 -14.37891 -14.07610 -13.92627 -13.46636 -13.36571 -13.14286 -12.85345 -12.80642 -12.61506 -12.46618 -12.27566 -12.08042 -11.97921 -11.77281 -11.29866 -11.27981 -10.90778 -10.87114 -10.72945 -10.21739 -9.14532 -8.35072 -6.46809 1.36638 1.37791 1.52560 2.31352 2.89480 2.98966 3.15095 3.26222 3.35539 3.79919 3.99526 4.03904 4.08864 4.20254 4.25681 4.34479 4.47771 4.50989 4.53515 4.62384 4.69578 4.78435 4.81530 4.83503 4.93979 5.00416 5.07207 5.13205 5.14726 5.28294 5.44117 5.52760 5.93467 6.09275 6.18918 6.50049 6.78688 6.87541 6.89808 7.25094 8.77446 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.006739 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.278469 B = 4153.819604 C = 4977.794896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.391 6.391 11 C 0.015 3.985 12 C 0.066 3.934 13 N -0.536 5.536 14 C 0.047 3.953 15 C -0.134 4.134 16 C 0.114 3.886 17 H 0.045 0.955 18 O -0.574 6.574 19 C -0.073 4.073 20 H 0.075 0.925 21 C 0.087 3.913 22 O -0.588 6.588 23 C 0.074 3.926 24 H 0.270 0.730 25 H -0.019 1.019 26 H -0.019 1.019 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.021 0.979 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.395 0.605 36 H 0.032 0.968 37 H 0.064 0.936 38 H 0.393 0.607 39 H 0.056 0.944 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.610 -11.609 8.602 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.311 6.311 11 C -0.064 4.064 12 C -0.062 4.062 13 N -0.259 5.259 14 C -0.080 4.080 15 C -0.172 4.172 16 C 0.055 3.945 17 H 0.063 0.937 18 O -0.383 6.383 19 C -0.092 4.092 20 H 0.094 0.906 21 C 0.009 3.991 22 O -0.396 6.396 23 C -0.054 4.054 24 H 0.079 0.921 25 H -0.001 1.001 26 H -0.001 1.001 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.137 0.863 30 H 0.094 0.906 31 H 0.039 0.961 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.245 0.755 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.242 0.758 39 H 0.075 0.925 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.295 -12.262 7.952 16.334 hybrid contribution -1.331 2.009 0.328 2.432 sum 5.965 -10.252 8.280 14.465 Atomic orbital electron populations 1.70074 1.07743 1.28508 1.50773 1.25921 0.95885 1.03272 0.94025 0.85215 0.78872 0.77588 0.78281 1.18667 1.19771 1.19629 1.21352 0.93912 0.90667 1.51760 0.92157 1.19775 0.88700 0.85128 0.93020 1.88012 1.34471 1.14025 1.94621 1.23348 0.97697 0.85502 0.99819 1.22339 0.93876 0.97264 0.92741 1.62225 1.32852 1.28142 1.02650 1.22194 0.94201 1.01178 0.90464 1.22211 1.00036 0.97188 0.97768 1.21665 0.91051 0.96659 0.85138 0.93689 1.86470 1.39292 1.93408 1.19125 1.21126 0.97785 0.96459 0.93853 0.90617 1.22095 0.92279 0.95692 0.89047 1.86427 1.63612 1.41815 1.47739 1.22049 0.96937 0.89723 0.96699 0.92107 1.00113 1.00144 0.94226 0.93610 0.86299 0.90638 0.96059 0.88207 0.88419 0.90154 0.75473 0.95003 0.91833 0.75792 0.92544 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 2 C 0.01 0.42 5.46 84.65 0.46 0.89 16 3 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.54 -32.04 9.43 25.60 0.24 -31.79 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.73 5.69 71.24 0.41 12.13 16 10 O -0.39 -18.80 6.77 -148.98 -1.01 -19.81 16 11 C 0.01 0.54 5.75 71.98 0.41 0.96 16 12 C 0.07 1.94 5.93 86.30 0.51 2.45 16 13 N -0.54 -16.27 4.86 -896.38 -4.35 -20.63 16 14 C 0.05 1.19 5.06 86.32 0.44 1.62 16 15 C -0.13 -2.85 5.72 30.64 0.18 -2.68 16 16 C 0.11 2.95 2.95 30.67 0.09 3.04 16 17 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 18 O -0.57 -12.91 12.68 -148.98 -1.89 -14.80 16 19 C -0.07 -2.32 2.32 -10.74 -0.02 -2.35 16 20 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 21 C 0.09 2.77 6.37 71.98 0.46 3.23 16 22 O -0.59 -19.19 13.22 -148.98 -1.97 -21.16 16 23 C 0.07 2.69 3.39 86.33 0.29 2.99 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 25 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 26 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 27 H 0.04 1.43 6.46 -2.39 -0.02 1.42 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.12 2.61 8.06 -2.39 -0.02 2.59 16 30 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.02 0.62 6.65 -2.39 -0.02 0.60 16 32 H 0.10 1.98 8.06 -2.39 -0.02 1.96 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.40 5.01 9.08 -74.06 -0.67 4.34 16 36 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.81 7.62 -2.39 -0.02 1.79 16 38 H 0.39 9.19 9.12 -74.06 -0.68 8.52 16 39 H 0.06 2.36 7.83 -2.39 -0.02 2.34 16 40 H 0.05 2.10 5.58 -2.39 -0.01 2.08 16 Total: -1.00 -71.47 317.61 -3.76 -75.23 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.32 Total: 20.05 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 3.46 Total: -9.51 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -4.07 Total: -76.39 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -4.87 Total: -55.77 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.47 -3.76 -75.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396885253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.278 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds