Wall clock time and date at job start Mon Mar 30 2020 05:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47008 * 110.99750 * 2 1 4 4 C 1.53101 * 109.25589 * 182.38899 * 3 2 1 5 5 O 1.43011 * 109.26242 * 303.15601 * 4 3 2 6 6 C 1.43009 * 113.73697 * 58.66467 * 5 4 3 7 7 H 1.09007 * 109.50828 * 61.31319 * 6 5 4 8 8 C 1.53007 * 109.50508 * 181.39422 * 6 5 4 9 9 S 1.81397 * 109.47166 * 300.00377 * 8 6 5 10 10 C 1.81401 * 102.99785 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47149 * 179.97438 * 10 9 8 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46744 * 90.00434 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00023 * 17 15 13 20 20 H 1.48498 * 109.47341 * 330.00626 * 17 15 13 21 21 C 1.47009 * 110.99837 * 123.63316 * 2 1 3 22 22 H 1.08998 * 109.47320 * 63.94841 * 1 2 3 23 23 H 1.08994 * 109.47220 * 183.95361 * 1 2 3 24 24 H 1.09004 * 109.46964 * 303.95349 * 1 2 3 25 25 H 1.09001 * 109.50995 * 62.46432 * 3 2 1 26 26 H 1.09000 * 109.51344 * 302.32625 * 3 2 1 27 27 H 1.09004 * 109.50946 * 183.21152 * 4 3 2 28 28 H 1.09000 * 109.53599 * 63.11406 * 4 3 2 29 29 H 1.09004 * 109.46969 * 180.02562 * 8 6 5 30 30 H 1.09000 * 109.46704 * 60.00644 * 8 6 5 31 31 H 1.09002 * 109.47085 * 299.99903 * 10 9 8 32 32 H 1.09001 * 109.47417 * 60.00029 * 10 9 8 33 33 H 1.09002 * 109.47153 * 299.99990 * 11 10 9 34 34 H 1.08998 * 109.47533 * 59.99620 * 11 10 9 35 35 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 36 36 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 37 37 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 38 38 H 1.09010 * 109.50751 * 57.67720 * 21 2 1 39 39 H 1.08999 * 109.51460 * 297.54220 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0602 5 8 4.0175 0.5573 1.0403 6 6 3.5249 -0.7849 1.0709 7 1 3.8391 -1.3086 0.1680 8 6 4.0826 -1.5058 2.2998 9 16 5.8945 -1.5289 2.2170 10 6 6.3611 -2.4088 3.7331 11 6 7.8854 -2.5141 3.8131 12 6 8.2790 -3.2556 5.0921 13 6 9.7803 -3.3599 5.1706 14 1 10.3926 -2.9388 4.3868 15 6 10.3724 -3.9917 6.2435 16 7 9.6269 -4.5040 7.1983 17 14 12.2334 -4.1215 6.3404 18 1 12.7754 -2.9386 7.0561 19 1 12.6059 -5.3576 7.0743 20 1 12.7983 -4.1714 4.9680 21 6 1.9958 -0.7602 1.1427 22 1 -0.3634 0.4513 -0.9232 23 1 -0.3633 -1.0251 0.0709 24 1 -0.3633 0.5740 0.8525 25 1 1.6828 1.8825 0.9110 26 1 1.6134 1.9092 -0.8682 27 1 3.9222 2.3398 -0.0030 28 1 3.8391 0.8648 -0.9964 29 1 3.7072 -2.5290 2.3223 30 1 3.7667 -0.9826 3.2024 31 1 5.9883 -1.8626 4.5996 32 1 5.9284 -3.4092 3.7204 33 1 8.2578 -3.0605 2.9466 34 1 8.3185 -1.5139 3.8255 35 1 7.9066 -2.7088 5.9584 36 1 7.8459 -4.2558 5.0800 37 1 10.0435 -4.9488 7.9529 38 1 1.6134 -1.7804 1.1086 39 1 1.6828 -0.2843 2.0720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400788933.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:16 Heat of formation + Delta-G solvation = -58.463964 kcal Electronic energy + Delta-G solvation = -16844.508327 eV Core-core repulsion = 14105.792420 eV Total energy + Delta-G solvation = -2738.715907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88716 -35.99403 -34.40435 -33.10385 -31.98478 -29.42364 -27.66854 -27.24520 -24.43055 -23.54636 -22.56674 -20.71655 -20.14305 -16.80584 -16.59626 -16.38120 -16.01657 -15.40651 -15.24622 -14.85860 -14.54925 -14.44884 -14.09562 -13.36371 -13.14790 -12.87744 -12.65680 -12.44053 -12.28537 -11.84484 -11.70228 -11.55238 -11.38181 -10.86512 -10.83396 -10.78371 -10.47373 -9.91937 -9.74692 -9.58899 -9.24742 -9.06753 -8.81634 -8.34378 -7.29331 -5.99557 -4.01777 1.90085 2.96803 3.33911 3.39771 3.43654 3.44157 3.51728 4.47505 4.49971 4.59681 4.62048 4.79460 4.89167 4.99881 5.05902 5.15766 5.18173 5.30229 5.36425 5.38076 5.44121 5.47765 5.56791 5.64236 5.70412 5.76628 6.18933 6.50054 6.51475 6.60916 6.77173 6.98842 7.06681 7.66510 7.79133 7.99883 8.42102 9.04827 9.62296 11.11897 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.064736 B = 0.002878 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.423794 B = 9728.174034 C =10020.085861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.016 3.984 4 C 0.062 3.938 5 O -0.366 6.366 6 C 0.113 3.887 7 H 0.076 0.924 8 C -0.087 4.087 9 S -0.253 6.253 10 C -0.078 4.078 11 C -0.094 4.094 12 C 0.027 3.973 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.027 3.973 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.027 0.973 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.260 0.740 38 H 0.088 0.912 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.171 9.560 -14.090 25.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.015 4.015 5 O -0.284 6.284 6 C 0.054 3.946 7 H 0.094 0.906 8 C -0.236 4.236 9 S -0.024 6.024 10 C -0.226 4.226 11 C -0.133 4.133 12 C -0.012 4.012 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.103 4.103 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.233 9.730 -15.011 25.543 hybrid contribution -0.424 -0.316 1.708 1.789 sum -18.657 9.414 -13.303 24.773 Atomic orbital electron populations 1.22388 0.86725 1.02204 1.01024 1.62188 1.08295 1.13786 1.42438 1.22853 0.97034 0.89646 1.01710 1.22652 0.91632 0.96740 0.90454 1.88147 1.69503 1.22849 1.47908 1.21763 0.91058 0.84161 0.97660 0.90583 1.23296 0.96942 1.02767 1.00581 1.87032 1.03383 1.77093 1.34928 1.23646 1.02874 1.00969 0.95138 1.21447 0.88823 1.01520 1.01531 1.19103 0.96306 0.95069 0.90693 1.21238 0.91886 1.36213 1.06437 0.92524 1.25027 0.98255 0.95499 0.95713 1.69966 1.35094 1.38079 1.10493 0.86567 0.85665 0.77473 0.78165 1.20632 1.21230 1.19808 1.22815 0.95622 0.99596 0.92266 0.91078 0.91115 0.95437 0.93855 0.89621 0.88212 0.92207 0.88871 0.89730 0.90651 0.90719 0.92415 0.92362 0.96461 0.96462 0.92996 0.89363 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.63 60.07 0.58 0.74 16 2 N -0.54 -4.83 4.99 -242.60 -1.21 -6.03 16 3 C 0.02 0.13 5.66 -3.71 -0.02 0.11 16 4 C 0.06 0.59 7.01 37.21 0.26 0.85 16 5 O -0.37 -4.70 10.06 -35.23 -0.35 -5.06 16 6 C 0.11 1.29 2.86 -26.68 -0.08 1.21 16 7 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 8 C -0.09 -1.08 5.67 37.16 0.21 -0.87 16 9 S -0.25 -4.12 21.38 -107.50 -2.30 -6.42 16 10 C -0.08 -1.40 5.94 37.16 0.22 -1.18 16 11 C -0.09 -2.02 5.16 -26.74 -0.14 -2.16 16 12 C 0.03 0.71 4.97 -27.89 -0.14 0.57 16 13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.03 0.25 4.94 -3.71 -0.02 0.23 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 24 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 32 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.09 0.71 8.11 -51.92 -0.42 0.29 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -31.44 329.49 -9.86 -41.30 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -7.15 Total: -5.00 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 0.47 Total: -14.21 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: -0.47 Total: -32.48 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.35 Total: -5.06 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -2.30 Total: -6.42 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.44 -9.86 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400788933.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.169 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds