Wall clock time and date at job start Mon Mar 30 2020 05:08:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46905 * 1
3 3 C 1.47008 * 110.99750 * 2 1
4 4 C 1.53101 * 109.25589 * 182.38899 * 3 2 1
5 5 O 1.43011 * 109.26242 * 303.15601 * 4 3 2
6 6 C 1.43009 * 113.73697 * 58.66467 * 5 4 3
7 7 H 1.09007 * 109.50828 * 61.31319 * 6 5 4
8 8 C 1.53007 * 109.50508 * 181.39422 * 6 5 4
9 9 S 1.81397 * 109.47166 * 300.00377 * 8 6 5
10 10 C 1.81401 * 102.99785 * 179.97438 * 9 8 6
11 11 C 1.52997 * 109.47149 * 179.97438 * 10 9 8
12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9
13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10
14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11
15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11
16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12
17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12
18 18 H 1.48498 * 109.46744 * 90.00434 * 17 15 13
19 19 H 1.48500 * 109.47304 * 210.00023 * 17 15 13
20 20 H 1.48498 * 109.47341 * 330.00626 * 17 15 13
21 21 C 1.47009 * 110.99837 * 123.63316 * 2 1 3
22 22 H 1.08998 * 109.47320 * 63.94841 * 1 2 3
23 23 H 1.08994 * 109.47220 * 183.95361 * 1 2 3
24 24 H 1.09004 * 109.46964 * 303.95349 * 1 2 3
25 25 H 1.09001 * 109.50995 * 62.46432 * 3 2 1
26 26 H 1.09000 * 109.51344 * 302.32625 * 3 2 1
27 27 H 1.09004 * 109.50946 * 183.21152 * 4 3 2
28 28 H 1.09000 * 109.53599 * 63.11406 * 4 3 2
29 29 H 1.09004 * 109.46969 * 180.02562 * 8 6 5
30 30 H 1.09000 * 109.46704 * 60.00644 * 8 6 5
31 31 H 1.09002 * 109.47085 * 299.99903 * 10 9 8
32 32 H 1.09001 * 109.47417 * 60.00029 * 10 9 8
33 33 H 1.09002 * 109.47153 * 299.99990 * 11 10 9
34 34 H 1.08998 * 109.47533 * 59.99620 * 11 10 9
35 35 H 1.09002 * 109.47103 * 300.00247 * 12 11 10
36 36 H 1.09001 * 109.47066 * 60.00169 * 12 11 10
37 37 H 0.96996 * 119.99885 * 179.97438 * 16 15 13
38 38 H 1.09010 * 109.50751 * 57.67720 * 21 2 1
39 39 H 1.08999 * 109.51460 * 297.54220 * 21 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9958 1.3725 0.0000
4 6 3.5249 1.3264 -0.0602
5 8 4.0175 0.5573 1.0403
6 6 3.5249 -0.7849 1.0709
7 1 3.8391 -1.3086 0.1680
8 6 4.0826 -1.5058 2.2998
9 16 5.8945 -1.5289 2.2170
10 6 6.3611 -2.4088 3.7331
11 6 7.8854 -2.5141 3.8131
12 6 8.2790 -3.2556 5.0921
13 6 9.7803 -3.3599 5.1706
14 1 10.3926 -2.9388 4.3868
15 6 10.3724 -3.9917 6.2435
16 7 9.6269 -4.5040 7.1983
17 14 12.2334 -4.1215 6.3404
18 1 12.7754 -2.9386 7.0561
19 1 12.6059 -5.3576 7.0743
20 1 12.7983 -4.1714 4.9680
21 6 1.9958 -0.7602 1.1427
22 1 -0.3634 0.4513 -0.9232
23 1 -0.3633 -1.0251 0.0709
24 1 -0.3633 0.5740 0.8525
25 1 1.6828 1.8825 0.9110
26 1 1.6134 1.9092 -0.8682
27 1 3.9222 2.3398 -0.0030
28 1 3.8391 0.8648 -0.9964
29 1 3.7072 -2.5290 2.3223
30 1 3.7667 -0.9826 3.2024
31 1 5.9883 -1.8626 4.5996
32 1 5.9284 -3.4092 3.7204
33 1 8.2578 -3.0605 2.9466
34 1 8.3185 -1.5139 3.8255
35 1 7.9066 -2.7088 5.9584
36 1 7.8459 -4.2558 5.0800
37 1 10.0435 -4.9488 7.9529
38 1 1.6134 -1.7804 1.1086
39 1 1.6828 -0.2843 2.0720
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000400788933.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:16
Heat of formation + Delta-G solvation = -58.463964 kcal
Electronic energy + Delta-G solvation = -16844.508327 eV
Core-core repulsion = 14105.792420 eV
Total energy + Delta-G solvation = -2738.715907 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.88716 -35.99403 -34.40435 -33.10385 -31.98478 -29.42364 -27.66854 -27.24520
-24.43055 -23.54636 -22.56674 -20.71655 -20.14305 -16.80584 -16.59626 -16.38120
-16.01657 -15.40651 -15.24622 -14.85860 -14.54925 -14.44884 -14.09562 -13.36371
-13.14790 -12.87744 -12.65680 -12.44053 -12.28537 -11.84484 -11.70228 -11.55238
-11.38181 -10.86512 -10.83396 -10.78371 -10.47373 -9.91937 -9.74692 -9.58899
-9.24742 -9.06753 -8.81634 -8.34378 -7.29331 -5.99557 -4.01777 1.90085
2.96803 3.33911 3.39771 3.43654 3.44157 3.51728 4.47505 4.49971
4.59681 4.62048 4.79460 4.89167 4.99881 5.05902 5.15766 5.18173
5.30229 5.36425 5.38076 5.44121 5.47765 5.56791 5.64236 5.70412
5.76628 6.18933 6.50054 6.51475 6.60916 6.77173 6.98842 7.06681
7.66510 7.79133 7.99883 8.42102 9.04827 9.62296 11.11897
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.064736 B = 0.002878 C = 0.002794
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 432.423794 B = 9728.174034 C =10020.085861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.542 5.542
3 C 0.016 3.984
4 C 0.062 3.938
5 O -0.366 6.366
6 C 0.113 3.887
7 H 0.076 0.924
8 C -0.087 4.087
9 S -0.253 6.253
10 C -0.078 4.078
11 C -0.094 4.094
12 C 0.027 3.973
13 C -0.519 4.519
14 H 0.056 0.944
15 C 0.056 3.944
16 N -0.897 5.897
17 Si 0.894 3.106
18 H -0.280 1.280
19 H -0.286 1.286
20 H -0.273 1.273
21 C 0.027 3.973
22 H 0.070 0.930
23 H 0.070 0.930
24 H 0.027 0.973
25 H 0.043 0.957
26 H 0.085 0.915
27 H 0.100 0.900
28 H 0.060 0.940
29 H 0.093 0.907
30 H 0.084 0.916
31 H 0.075 0.925
32 H 0.074 0.926
33 H 0.057 0.943
34 H 0.058 0.942
35 H 0.017 0.983
36 H 0.017 0.983
37 H 0.260 0.740
38 H 0.088 0.912
39 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.171 9.560 -14.090 25.641
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.267 5.267
3 C -0.112 4.112
4 C -0.015 4.015
5 O -0.284 6.284
6 C 0.054 3.946
7 H 0.094 0.906
8 C -0.236 4.236
9 S -0.024 6.024
10 C -0.226 4.226
11 C -0.133 4.133
12 C -0.012 4.012
13 C -0.558 4.558
14 H 0.075 0.925
15 C -0.145 4.145
16 N -0.536 5.536
17 Si 0.721 3.279
18 H -0.206 1.206
19 H -0.212 1.212
20 H -0.198 1.198
21 C -0.103 4.103
22 H 0.089 0.911
23 H 0.089 0.911
24 H 0.046 0.954
25 H 0.061 0.939
26 H 0.104 0.896
27 H 0.118 0.882
28 H 0.078 0.922
29 H 0.111 0.889
30 H 0.103 0.897
31 H 0.093 0.907
32 H 0.093 0.907
33 H 0.076 0.924
34 H 0.076 0.924
35 H 0.035 0.965
36 H 0.035 0.965
37 H 0.070 0.930
38 H 0.106 0.894
39 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -18.233 9.730 -15.011 25.543
hybrid contribution -0.424 -0.316 1.708 1.789
sum -18.657 9.414 -13.303 24.773
Atomic orbital electron populations
1.22388 0.86725 1.02204 1.01024 1.62188 1.08295 1.13786 1.42438
1.22853 0.97034 0.89646 1.01710 1.22652 0.91632 0.96740 0.90454
1.88147 1.69503 1.22849 1.47908 1.21763 0.91058 0.84161 0.97660
0.90583 1.23296 0.96942 1.02767 1.00581 1.87032 1.03383 1.77093
1.34928 1.23646 1.02874 1.00969 0.95138 1.21447 0.88823 1.01520
1.01531 1.19103 0.96306 0.95069 0.90693 1.21238 0.91886 1.36213
1.06437 0.92524 1.25027 0.98255 0.95499 0.95713 1.69966 1.35094
1.38079 1.10493 0.86567 0.85665 0.77473 0.78165 1.20632 1.21230
1.19808 1.22815 0.95622 0.99596 0.92266 0.91078 0.91115 0.95437
0.93855 0.89621 0.88212 0.92207 0.88871 0.89730 0.90651 0.90719
0.92415 0.92362 0.96461 0.96462 0.92996 0.89363 0.93642
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.17 9.63 60.07 0.58 0.74 16
2 N -0.54 -4.83 4.99 -242.60 -1.21 -6.03 16
3 C 0.02 0.13 5.66 -3.71 -0.02 0.11 16
4 C 0.06 0.59 7.01 37.21 0.26 0.85 16
5 O -0.37 -4.70 10.06 -35.23 -0.35 -5.06 16
6 C 0.11 1.29 2.86 -26.68 -0.08 1.21 16
7 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
8 C -0.09 -1.08 5.67 37.16 0.21 -0.87 16
9 S -0.25 -4.12 21.38 -107.50 -2.30 -6.42 16
10 C -0.08 -1.40 5.94 37.16 0.22 -1.18 16
11 C -0.09 -2.02 5.16 -26.74 -0.14 -2.16 16
12 C 0.03 0.71 4.97 -27.89 -0.14 0.57 16
13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16
14 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16
15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
16 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16
17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16
18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16
20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
21 C 0.03 0.25 4.94 -3.71 -0.02 0.23 16
22 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16
23 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16
24 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16
25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16
26 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16
27 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16
28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16
30 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16
31 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16
32 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16
33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16
35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16
37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
38 H 0.09 0.71 8.11 -51.92 -0.42 0.29 16
39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
LS Contribution 329.49 15.07 4.97 4.97
Total: -1.00 -31.44 329.49 -9.86 -41.30
By element:
Atomic # 1 Polarization: 2.14 SS G_CDS: -7.15 Total: -5.00 kcal
Atomic # 6 Polarization: -14.68 SS G_CDS: 0.47 Total: -14.21 kcal
Atomic # 7 Polarization: -32.00 SS G_CDS: -0.47 Total: -32.48 kcal
Atomic # 8 Polarization: -4.70 SS G_CDS: -0.35 Total: -5.06 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal
Atomic # 16 Polarization: -4.12 SS G_CDS: -2.30 Total: -6.42 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -31.44 -9.86 -41.30 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000400788933.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.169 kcal
(2) G-P(sol) polarization free energy of solvation -31.435 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds