Wall clock time and date at job start Mon Mar 30 2020 05:08:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46905 * 1
3 3 C 1.47008 * 110.99750 * 2 1
4 4 C 1.53101 * 109.25589 * 182.38899 * 3 2 1
5 5 O 1.43011 * 109.26242 * 303.15601 * 4 3 2
6 6 C 1.43009 * 113.73697 * 58.66467 * 5 4 3
7 7 H 1.09007 * 109.50828 * 61.31319 * 6 5 4
8 8 C 1.53007 * 109.50508 * 181.39422 * 6 5 4
9 9 S 1.81397 * 109.47166 * 300.00377 * 8 6 5
10 10 C 1.81401 * 102.99785 * 179.97438 * 9 8 6
11 11 C 1.52997 * 109.47149 * 179.97438 * 10 9 8
12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9
13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10
14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11
15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11
16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12
17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12
18 18 H 1.48498 * 109.46744 * 90.00434 * 17 15 13
19 19 H 1.48500 * 109.47304 * 210.00023 * 17 15 13
20 20 H 1.48498 * 109.47341 * 330.00626 * 17 15 13
21 21 C 1.47009 * 110.99837 * 123.63316 * 2 1 3
22 22 H 1.08998 * 109.47320 * 63.94841 * 1 2 3
23 23 H 1.08994 * 109.47220 * 183.95361 * 1 2 3
24 24 H 1.09004 * 109.46964 * 303.95349 * 1 2 3
25 25 H 1.09001 * 109.50995 * 62.46432 * 3 2 1
26 26 H 1.09000 * 109.51344 * 302.32625 * 3 2 1
27 27 H 1.09004 * 109.50946 * 183.21152 * 4 3 2
28 28 H 1.09000 * 109.53599 * 63.11406 * 4 3 2
29 29 H 1.09004 * 109.46969 * 180.02562 * 8 6 5
30 30 H 1.09000 * 109.46704 * 60.00644 * 8 6 5
31 31 H 1.09002 * 109.47085 * 299.99903 * 10 9 8
32 32 H 1.09001 * 109.47417 * 60.00029 * 10 9 8
33 33 H 1.09002 * 109.47153 * 299.99990 * 11 10 9
34 34 H 1.08998 * 109.47533 * 59.99620 * 11 10 9
35 35 H 1.09002 * 109.47103 * 300.00247 * 12 11 10
36 36 H 1.09001 * 109.47066 * 60.00169 * 12 11 10
37 37 H 0.96996 * 119.99885 * 179.97438 * 16 15 13
38 38 H 1.09010 * 109.50751 * 57.67720 * 21 2 1
39 39 H 1.08999 * 109.51460 * 297.54220 * 21 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9958 1.3725 0.0000
4 6 3.5249 1.3264 -0.0602
5 8 4.0175 0.5573 1.0403
6 6 3.5249 -0.7849 1.0709
7 1 3.8391 -1.3086 0.1680
8 6 4.0826 -1.5058 2.2998
9 16 5.8945 -1.5289 2.2170
10 6 6.3611 -2.4088 3.7331
11 6 7.8854 -2.5141 3.8131
12 6 8.2790 -3.2556 5.0921
13 6 9.7803 -3.3599 5.1706
14 1 10.3926 -2.9388 4.3868
15 6 10.3724 -3.9917 6.2435
16 7 9.6269 -4.5040 7.1983
17 14 12.2334 -4.1215 6.3404
18 1 12.7754 -2.9386 7.0561
19 1 12.6059 -5.3576 7.0743
20 1 12.7983 -4.1714 4.9680
21 6 1.9958 -0.7602 1.1427
22 1 -0.3634 0.4513 -0.9232
23 1 -0.3633 -1.0251 0.0709
24 1 -0.3633 0.5740 0.8525
25 1 1.6828 1.8825 0.9110
26 1 1.6134 1.9092 -0.8682
27 1 3.9222 2.3398 -0.0030
28 1 3.8391 0.8648 -0.9964
29 1 3.7072 -2.5290 2.3223
30 1 3.7667 -0.9826 3.2024
31 1 5.9883 -1.8626 4.5996
32 1 5.9284 -3.4092 3.7204
33 1 8.2578 -3.0605 2.9466
34 1 8.3185 -1.5139 3.8255
35 1 7.9066 -2.7088 5.9584
36 1 7.8459 -4.2558 5.0800
37 1 10.0435 -4.9488 7.9529
38 1 1.6134 -1.7804 1.1086
39 1 1.6828 -0.2843 2.0720
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000400788933.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:16
Heat of formation + Delta-G solvation = -78.401911 kcal
Electronic energy + Delta-G solvation = -16845.372902 eV
Core-core repulsion = 14105.792420 eV
Total energy + Delta-G solvation = -2739.580482 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.65721 -36.72748 -36.35554 -34.04280 -33.95270 -30.14360 -29.42258 -28.21472
-25.41460 -25.09405 -23.56108 -22.01174 -21.42433 -18.57090 -17.66514 -17.29071
-17.15218 -16.58926 -16.21094 -16.16854 -15.91065 -15.75645 -14.89092 -14.60567
-14.39521 -14.19712 -13.90537 -13.46973 -13.34305 -13.20670 -12.88391 -12.75771
-12.72976 -12.43367 -12.34097 -12.17887 -11.66289 -11.60669 -11.38756 -11.15639
-10.86208 -10.59109 -10.56587 -9.46311 -8.59443 -8.21535 -6.32554 0.66669
1.40382 1.41714 1.53171 1.69025 2.41081 2.70292 2.80432 3.11762
3.72605 3.84057 3.94532 3.98261 4.04579 4.11032 4.17267 4.25395
4.37789 4.51231 4.57198 4.59790 4.60671 4.64650 4.77298 4.82303
4.86998 4.96268 4.97578 4.99216 5.13481 5.48652 5.68090 5.81874
5.85452 5.92420 6.17843 6.22315 6.82981 7.36590 8.90361
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.064736 B = 0.002878 C = 0.002794
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 432.423794 B = 9728.174034 C =10020.085861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.554 5.554
3 C 0.019 3.981
4 C 0.057 3.943
5 O -0.394 6.394
6 C 0.114 3.886
7 H 0.069 0.931
8 C -0.074 4.074
9 S -0.279 6.279
10 C -0.071 4.071
11 C -0.080 4.080
12 C 0.031 3.969
13 C -0.545 4.545
14 H 0.058 0.942
15 C 0.001 3.999
16 N -0.932 5.932
17 Si 0.966 3.034
18 H -0.272 1.272
19 H -0.280 1.280
20 H -0.264 1.264
21 C 0.033 3.967
22 H 0.082 0.918
23 H 0.077 0.923
24 H 0.028 0.972
25 H 0.039 0.961
26 H 0.105 0.895
27 H 0.112 0.888
28 H 0.058 0.942
29 H 0.114 0.886
30 H 0.087 0.913
31 H 0.076 0.924
32 H 0.082 0.918
33 H 0.055 0.945
34 H 0.052 0.948
35 H -0.004 1.004
36 H -0.002 1.002
37 H 0.265 0.735
38 H 0.103 0.897
39 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.846 9.966 -15.075 26.841
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.279 5.279
3 C -0.109 4.109
4 C -0.020 4.020
5 O -0.313 6.313
6 C 0.055 3.945
7 H 0.087 0.913
8 C -0.223 4.223
9 S -0.051 6.051
10 C -0.219 4.219
11 C -0.119 4.119
12 C -0.008 4.008
13 C -0.584 4.584
14 H 0.076 0.924
15 C -0.197 4.197
16 N -0.573 5.573
17 Si 0.790 3.210
18 H -0.197 1.197
19 H -0.205 1.205
20 H -0.189 1.189
21 C -0.097 4.097
22 H 0.100 0.900
23 H 0.096 0.904
24 H 0.047 0.953
25 H 0.057 0.943
26 H 0.123 0.877
27 H 0.130 0.870
28 H 0.076 0.924
29 H 0.132 0.868
30 H 0.106 0.894
31 H 0.095 0.905
32 H 0.100 0.900
33 H 0.074 0.926
34 H 0.071 0.929
35 H 0.014 0.986
36 H 0.016 0.984
37 H 0.073 0.927
38 H 0.121 0.879
39 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -18.915 10.144 -16.007 26.775
hybrid contribution -0.300 -0.402 1.964 2.027
sum -19.215 9.742 -14.043 25.716
Atomic orbital electron populations
1.22443 0.85278 1.02888 1.01673 1.62212 1.09624 1.13993 1.42095
1.22838 0.95989 0.89642 1.02381 1.22836 0.92751 0.96933 0.89450
1.88102 1.70436 1.23525 1.49239 1.21751 0.92495 0.83621 0.96629
0.91321 1.23405 0.93092 1.04389 1.01402 1.87078 1.07793 1.76720
1.33475 1.23366 1.00239 1.01870 0.96399 1.21156 0.91622 1.00268
0.98874 1.18978 0.95249 0.94276 0.92267 1.21671 0.93362 1.36517
1.06804 0.92357 1.25972 1.03665 0.94897 0.95199 1.70086 1.37372
1.38682 1.11123 0.85435 0.79160 0.77808 0.78593 1.19719 1.20496
1.18856 1.22726 0.93837 1.00617 0.92478 0.89977 0.90394 0.95290
0.94255 0.87704 0.86974 0.92382 0.86754 0.89404 0.90480 0.89954
0.92621 0.92897 0.98588 0.98375 0.92658 0.87901 0.93893
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.27 9.63 127.69 1.23 1.50 16
2 N -0.55 -8.69 4.99 -921.44 -4.59 -13.28 16
3 C 0.02 0.28 5.66 86.32 0.49 0.77 16
4 C 0.06 1.01 7.01 72.02 0.50 1.52 16
5 O -0.39 -9.77 10.06 -148.98 -1.50 -11.27 16
6 C 0.11 2.46 2.86 30.63 0.09 2.54 16
7 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16
8 C -0.07 -1.73 5.67 71.98 0.41 -1.32 16
9 S -0.28 -8.92 21.38 -56.49 -1.21 -10.13 16
10 C -0.07 -2.51 5.94 71.98 0.43 -2.08 16
11 C -0.08 -3.50 5.16 30.59 0.16 -3.34 16
12 C 0.03 1.67 4.97 29.84 0.15 1.82 16
13 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16
14 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16
15 C 0.00 0.03 5.46 84.65 0.46 0.49 16
16 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16
17 Si 0.97 44.93 29.54 68.60 2.03 46.96 16
18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16
19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16
20 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16
21 C 0.03 0.56 4.94 86.31 0.43 0.98 16
22 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
23 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16
24 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16
25 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16
26 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16
27 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16
28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
29 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16
30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16
31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16
32 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16
33 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16
34 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16
35 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16
36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16
37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16
38 H 0.10 1.39 8.11 -2.38 -0.02 1.37 16
39 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16
Total: -1.00 -67.18 329.49 0.56 -66.61
By element:
Atomic # 1 Polarization: 5.74 SS G_CDS: 0.98 Total: 6.72 kcal
Atomic # 6 Polarization: -33.28 SS G_CDS: 4.57 Total: -28.71 kcal
Atomic # 7 Polarization: -65.87 SS G_CDS: -4.31 Total: -70.18 kcal
Atomic # 8 Polarization: -9.77 SS G_CDS: -1.50 Total: -11.27 kcal
Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal
Atomic # 16 Polarization: -8.92 SS G_CDS: -1.21 Total: -10.13 kcal
Total: -67.18 0.56 -66.61 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000400788933.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.789 kcal
(2) G-P(sol) polarization free energy of solvation -67.175 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.965 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.402 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds