Wall clock time and date at job start Mon Mar 30 2020 05:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47008 * 110.99750 * 2 1 4 4 C 1.53101 * 109.25589 * 182.38899 * 3 2 1 5 5 O 1.43011 * 109.26242 * 303.15601 * 4 3 2 6 6 C 1.43009 * 113.73697 * 58.66467 * 5 4 3 7 7 H 1.09007 * 109.50828 * 61.31319 * 6 5 4 8 8 C 1.53007 * 109.50508 * 181.39422 * 6 5 4 9 9 S 1.81397 * 109.47166 * 300.00377 * 8 6 5 10 10 C 1.81401 * 102.99785 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47149 * 179.97438 * 10 9 8 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46744 * 90.00434 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00023 * 17 15 13 20 20 H 1.48498 * 109.47341 * 330.00626 * 17 15 13 21 21 C 1.47009 * 110.99837 * 123.63316 * 2 1 3 22 22 H 1.08998 * 109.47320 * 63.94841 * 1 2 3 23 23 H 1.08994 * 109.47220 * 183.95361 * 1 2 3 24 24 H 1.09004 * 109.46964 * 303.95349 * 1 2 3 25 25 H 1.09001 * 109.50995 * 62.46432 * 3 2 1 26 26 H 1.09000 * 109.51344 * 302.32625 * 3 2 1 27 27 H 1.09004 * 109.50946 * 183.21152 * 4 3 2 28 28 H 1.09000 * 109.53599 * 63.11406 * 4 3 2 29 29 H 1.09004 * 109.46969 * 180.02562 * 8 6 5 30 30 H 1.09000 * 109.46704 * 60.00644 * 8 6 5 31 31 H 1.09002 * 109.47085 * 299.99903 * 10 9 8 32 32 H 1.09001 * 109.47417 * 60.00029 * 10 9 8 33 33 H 1.09002 * 109.47153 * 299.99990 * 11 10 9 34 34 H 1.08998 * 109.47533 * 59.99620 * 11 10 9 35 35 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 36 36 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 37 37 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 38 38 H 1.09010 * 109.50751 * 57.67720 * 21 2 1 39 39 H 1.08999 * 109.51460 * 297.54220 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0602 5 8 4.0175 0.5573 1.0403 6 6 3.5249 -0.7849 1.0709 7 1 3.8391 -1.3086 0.1680 8 6 4.0826 -1.5058 2.2998 9 16 5.8945 -1.5289 2.2170 10 6 6.3611 -2.4088 3.7331 11 6 7.8854 -2.5141 3.8131 12 6 8.2790 -3.2556 5.0921 13 6 9.7803 -3.3599 5.1706 14 1 10.3926 -2.9388 4.3868 15 6 10.3724 -3.9917 6.2435 16 7 9.6269 -4.5040 7.1983 17 14 12.2334 -4.1215 6.3404 18 1 12.7754 -2.9386 7.0561 19 1 12.6059 -5.3576 7.0743 20 1 12.7983 -4.1714 4.9680 21 6 1.9958 -0.7602 1.1427 22 1 -0.3634 0.4513 -0.9232 23 1 -0.3633 -1.0251 0.0709 24 1 -0.3633 0.5740 0.8525 25 1 1.6828 1.8825 0.9110 26 1 1.6134 1.9092 -0.8682 27 1 3.9222 2.3398 -0.0030 28 1 3.8391 0.8648 -0.9964 29 1 3.7072 -2.5290 2.3223 30 1 3.7667 -0.9826 3.2024 31 1 5.9883 -1.8626 4.5996 32 1 5.9284 -3.4092 3.7204 33 1 8.2578 -3.0605 2.9466 34 1 8.3185 -1.5139 3.8255 35 1 7.9066 -2.7088 5.9584 36 1 7.8459 -4.2558 5.0800 37 1 10.0435 -4.9488 7.9529 38 1 1.6134 -1.7804 1.1086 39 1 1.6828 -0.2843 2.0720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400788933.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:16 Heat of formation + Delta-G solvation = -78.401911 kcal Electronic energy + Delta-G solvation = -16845.372902 eV Core-core repulsion = 14105.792420 eV Total energy + Delta-G solvation = -2739.580482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65721 -36.72748 -36.35554 -34.04280 -33.95270 -30.14360 -29.42258 -28.21472 -25.41460 -25.09405 -23.56108 -22.01174 -21.42433 -18.57090 -17.66514 -17.29071 -17.15218 -16.58926 -16.21094 -16.16854 -15.91065 -15.75645 -14.89092 -14.60567 -14.39521 -14.19712 -13.90537 -13.46973 -13.34305 -13.20670 -12.88391 -12.75771 -12.72976 -12.43367 -12.34097 -12.17887 -11.66289 -11.60669 -11.38756 -11.15639 -10.86208 -10.59109 -10.56587 -9.46311 -8.59443 -8.21535 -6.32554 0.66669 1.40382 1.41714 1.53171 1.69025 2.41081 2.70292 2.80432 3.11762 3.72605 3.84057 3.94532 3.98261 4.04579 4.11032 4.17267 4.25395 4.37789 4.51231 4.57198 4.59790 4.60671 4.64650 4.77298 4.82303 4.86998 4.96268 4.97578 4.99216 5.13481 5.48652 5.68090 5.81874 5.85452 5.92420 6.17843 6.22315 6.82981 7.36590 8.90361 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.064736 B = 0.002878 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.423794 B = 9728.174034 C =10020.085861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.554 5.554 3 C 0.019 3.981 4 C 0.057 3.943 5 O -0.394 6.394 6 C 0.114 3.886 7 H 0.069 0.931 8 C -0.074 4.074 9 S -0.279 6.279 10 C -0.071 4.071 11 C -0.080 4.080 12 C 0.031 3.969 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.264 1.264 21 C 0.033 3.967 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.028 0.972 25 H 0.039 0.961 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.052 0.948 35 H -0.004 1.004 36 H -0.002 1.002 37 H 0.265 0.735 38 H 0.103 0.897 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.846 9.966 -15.075 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.109 4.109 4 C -0.020 4.020 5 O -0.313 6.313 6 C 0.055 3.945 7 H 0.087 0.913 8 C -0.223 4.223 9 S -0.051 6.051 10 C -0.219 4.219 11 C -0.119 4.119 12 C -0.008 4.008 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.097 4.097 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.123 0.877 27 H 0.130 0.870 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.915 10.144 -16.007 26.775 hybrid contribution -0.300 -0.402 1.964 2.027 sum -19.215 9.742 -14.043 25.716 Atomic orbital electron populations 1.22443 0.85278 1.02888 1.01673 1.62212 1.09624 1.13993 1.42095 1.22838 0.95989 0.89642 1.02381 1.22836 0.92751 0.96933 0.89450 1.88102 1.70436 1.23525 1.49239 1.21751 0.92495 0.83621 0.96629 0.91321 1.23405 0.93092 1.04389 1.01402 1.87078 1.07793 1.76720 1.33475 1.23366 1.00239 1.01870 0.96399 1.21156 0.91622 1.00268 0.98874 1.18978 0.95249 0.94276 0.92267 1.21671 0.93362 1.36517 1.06804 0.92357 1.25972 1.03665 0.94897 0.95199 1.70086 1.37372 1.38682 1.11123 0.85435 0.79160 0.77808 0.78593 1.19719 1.20496 1.18856 1.22726 0.93837 1.00617 0.92478 0.89977 0.90394 0.95290 0.94255 0.87704 0.86974 0.92382 0.86754 0.89404 0.90480 0.89954 0.92621 0.92897 0.98588 0.98375 0.92658 0.87901 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.63 127.69 1.23 1.50 16 2 N -0.55 -8.69 4.99 -921.44 -4.59 -13.28 16 3 C 0.02 0.28 5.66 86.32 0.49 0.77 16 4 C 0.06 1.01 7.01 72.02 0.50 1.52 16 5 O -0.39 -9.77 10.06 -148.98 -1.50 -11.27 16 6 C 0.11 2.46 2.86 30.63 0.09 2.54 16 7 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 8 C -0.07 -1.73 5.67 71.98 0.41 -1.32 16 9 S -0.28 -8.92 21.38 -56.49 -1.21 -10.13 16 10 C -0.07 -2.51 5.94 71.98 0.43 -2.08 16 11 C -0.08 -3.50 5.16 30.59 0.16 -3.34 16 12 C 0.03 1.67 4.97 29.84 0.15 1.82 16 13 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 15 C 0.00 0.03 5.46 84.65 0.46 0.49 16 16 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 17 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 21 C 0.03 0.56 4.94 86.31 0.43 0.98 16 22 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 24 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 25 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 34 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.10 1.39 8.11 -2.38 -0.02 1.37 16 39 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -67.18 329.49 0.56 -66.61 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.98 Total: 6.72 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 4.57 Total: -28.71 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -4.31 Total: -70.18 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.50 Total: -11.27 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.21 Total: -10.13 kcal Total: -67.18 0.56 -66.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400788933.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.789 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds