Wall clock time and date at job start Mon Mar 30 2020 04:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46554 * 2 1 4 4 C 1.52996 * 109.46942 * 119.99554 * 2 1 3 5 5 C 1.50700 * 109.47174 * 185.00085 * 4 2 1 6 6 H 1.08001 * 119.99758 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00540 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00407 * 180.02562 * 7 5 4 9 9 Si 1.86810 * 119.99523 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46789 * 90.00280 * 9 7 5 11 11 H 1.48497 * 109.46860 * 210.00248 * 9 7 5 12 12 H 1.48495 * 109.47008 * 330.00229 * 9 7 5 13 13 S 1.81398 * 109.47226 * 239.99964 * 2 1 3 14 14 C 1.81399 * 102.99861 * 64.99946 * 13 2 1 15 15 C 1.53004 * 109.46693 * 179.97438 * 14 13 2 16 16 H 1.08993 * 109.54144 * 60.11242 * 15 14 13 17 17 C 1.53103 * 109.50321 * 180.21460 * 15 14 13 18 18 N 1.47017 * 109.25606 * 176.78422 * 17 15 14 19 19 C 1.46900 * 110.99765 * 177.61039 * 18 17 15 20 20 C 1.47014 * 110.75303 * 301.38548 * 18 17 15 21 21 C 1.53096 * 109.25675 * 58.61803 * 20 18 17 22 22 O 1.43010 * 109.51074 * 299.99696 * 15 14 13 23 23 H 1.09000 * 109.47617 * 60.00338 * 1 2 3 24 24 H 1.09007 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47469 * 299.99968 * 1 2 3 26 26 H 1.08999 * 109.47833 * 305.00530 * 4 2 1 27 27 H 1.09005 * 109.47431 * 65.00614 * 4 2 1 28 28 H 0.97000 * 120.00148 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47429 * 60.00205 * 14 13 2 30 30 H 1.09002 * 109.47091 * 299.99590 * 14 13 2 31 31 H 1.09006 * 109.50645 * 56.85001 * 17 15 14 32 32 H 1.08995 * 109.54475 * 296.74136 * 17 15 14 33 33 H 1.09003 * 109.47032 * 187.58782 * 19 18 17 34 34 H 1.09006 * 109.47251 * 307.59140 * 19 18 17 35 35 H 1.09002 * 109.47211 * 67.58697 * 19 18 17 36 36 H 1.09004 * 109.50706 * 298.68119 * 20 18 17 37 37 H 1.08995 * 109.54210 * 178.57064 * 20 18 17 38 38 H 1.08997 * 109.50375 * 183.21864 * 21 20 18 39 39 H 1.08994 * 109.50924 * 63.08237 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5418 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5397 7 6 4.2304 -1.1933 2.3579 8 7 5.5410 -1.1001 2.4136 9 14 3.3015 -2.1096 3.6948 10 1 3.1711 -3.5395 3.3157 11 1 4.0448 -2.0029 4.9759 12 1 1.9504 -1.5148 3.8553 13 16 2.1347 -0.8551 -1.4811 14 6 1.5664 0.2153 -2.8308 15 6 2.0051 -0.3779 -4.1713 16 1 1.5708 -1.3704 -4.2903 17 6 1.5305 0.5277 -5.3108 18 7 2.0205 -0.0057 -6.5902 19 6 1.5389 0.8042 -7.7172 20 6 3.4882 -0.0903 -6.5915 21 6 3.9430 -0.9898 -5.4391 22 8 3.4316 -0.4733 -4.2074 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6053 -0.2617 2.1370 27 1 1.7517 -1.7715 1.2057 28 1 6.0254 -1.5068 3.1490 29 1 2.0001 1.2085 -2.7142 30 1 0.4792 0.2881 -2.8037 31 1 1.9214 1.5345 -5.1626 32 1 0.4410 0.5584 -5.3226 33 1 1.8014 0.3144 -8.6550 34 1 0.4558 0.9090 -7.6527 35 1 2.0021 1.7902 -7.6802 36 1 3.9104 0.9065 -6.4637 37 1 3.8283 -0.5111 -7.5376 38 1 5.0321 -1.0097 -5.4010 39 1 3.5651 -2.0001 -5.5949 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577868984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:57 Heat of formation + Delta-G solvation = -48.095290 kcal Electronic energy + Delta-G solvation = -17584.830695 eV Core-core repulsion = 14846.564407 eV Total energy + Delta-G solvation = -2738.266288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.65798 -35.78003 -34.59460 -32.87265 -31.99341 -29.22483 -28.10719 -27.07861 -24.23029 -23.05310 -22.58722 -20.61380 -20.13458 -16.64263 -16.52389 -16.32385 -15.91229 -15.33292 -15.05668 -14.86097 -14.34190 -13.93356 -13.74505 -13.18819 -12.98911 -12.60551 -12.55129 -12.45022 -12.14218 -12.07204 -11.72936 -11.54937 -11.32311 -10.96912 -10.89620 -10.51990 -10.29758 -9.81558 -9.62818 -9.54864 -9.18207 -8.92702 -8.64738 -8.44948 -6.74892 -5.93987 -3.91106 2.32064 3.36102 3.40173 3.43088 3.45165 3.61667 3.79013 4.51870 4.70483 4.79936 4.81748 5.02734 5.08212 5.20661 5.23581 5.34877 5.37886 5.39286 5.49596 5.54780 5.56371 5.63061 5.68712 5.70390 5.87565 5.91243 6.02839 6.29451 6.47969 6.59605 6.67121 6.68275 7.10907 7.27166 7.27770 7.81190 8.62807 9.15664 9.66884 11.19124 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.034288 B = 0.004541 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.417969 B = 6164.132205 C = 6770.148484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 H 0.078 0.922 4 C 0.004 3.996 5 C -0.512 4.512 6 H 0.083 0.917 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.267 1.267 13 S -0.198 6.198 14 C -0.104 4.104 15 C 0.115 3.885 16 H 0.073 0.927 17 C 0.027 3.973 18 N -0.543 5.543 19 C 0.025 3.975 20 C 0.016 3.984 21 C 0.062 3.938 22 O -0.360 6.360 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.020 0.980 28 H 0.261 0.739 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.705 3.353 -17.913 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 H 0.096 0.904 4 C -0.034 4.034 5 C -0.550 4.550 6 H 0.101 0.899 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.192 1.192 13 S 0.030 5.970 14 C -0.252 4.252 15 C 0.056 3.944 16 H 0.091 0.909 17 C -0.103 4.103 18 N -0.268 5.268 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.016 4.016 22 O -0.278 6.278 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.029 1.941 -17.764 20.021 hybrid contribution -0.887 1.473 0.641 1.836 sum -9.917 3.414 -17.122 20.079 Atomic orbital electron populations 1.22158 0.95484 1.02176 1.00780 1.23184 0.95647 1.01949 0.96601 0.90357 1.19465 0.98080 0.95267 0.90566 1.21155 0.89221 1.35103 1.09543 0.89945 1.24976 0.94678 0.95910 0.97705 1.69908 1.06451 1.45486 1.32177 0.86884 0.80409 0.80824 0.81811 1.20269 1.21441 1.19174 1.87425 1.75842 1.35393 0.98368 1.23372 1.02654 1.02885 0.96319 1.21717 0.82494 0.98415 0.91818 0.90879 1.22832 1.00897 0.97251 0.89292 1.62195 1.09922 1.51710 1.02939 1.22380 1.00704 0.95325 0.93902 1.22858 0.87688 1.00128 1.00529 1.22647 0.99440 0.96325 0.83138 1.88221 1.19586 1.85170 1.34831 0.93799 0.91966 0.92322 0.95278 0.96217 0.92869 0.90141 0.89667 0.93747 0.89635 0.91178 0.91262 0.95517 0.93879 0.89749 0.88179 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.10 37.16 0.34 -2.00 16 2 C -0.04 -0.91 2.77 -26.73 -0.07 -0.98 16 3 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 4 C 0.00 0.11 3.51 -27.89 -0.10 0.01 16 5 C -0.51 -14.84 9.09 -34.44 -0.31 -15.15 16 6 H 0.08 2.61 7.85 -52.49 -0.41 2.20 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 9 Si 0.87 22.05 27.47 -169.99 -4.67 17.38 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 S -0.20 -4.01 20.10 -107.50 -2.16 -6.17 16 14 C -0.10 -1.56 5.37 37.16 0.20 -1.36 16 15 C 0.11 1.62 2.86 -26.68 -0.08 1.54 16 16 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 17 C 0.03 0.31 4.94 -3.71 -0.02 0.29 16 18 N -0.54 -5.85 4.99 -242.58 -1.21 -7.06 16 19 C 0.03 0.21 9.63 60.06 0.58 0.78 16 20 C 0.02 0.17 5.66 -3.71 -0.02 0.15 16 21 C 0.06 0.76 7.01 37.21 0.26 1.02 16 22 O -0.36 -5.84 10.07 -35.23 -0.35 -6.19 16 23 H 0.04 0.59 6.92 -51.93 -0.36 0.24 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 27 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.08 1.08 7.14 -51.92 -0.37 0.71 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -32.56 321.61 -9.08 -41.65 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -6.99 Total: -3.03 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 0.68 Total: -13.77 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: -0.44 Total: -34.70 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.35 Total: -6.19 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.16 Total: -6.17 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.56 -9.08 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577868984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.449 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds