Wall clock time and date at job start Mon Mar 30 2020 04:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46554 * 2 1 4 4 C 1.52996 * 109.46942 * 119.99554 * 2 1 3 5 5 C 1.50700 * 109.47174 * 185.00085 * 4 2 1 6 6 H 1.08001 * 119.99758 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00540 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00407 * 180.02562 * 7 5 4 9 9 Si 1.86810 * 119.99523 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46789 * 90.00280 * 9 7 5 11 11 H 1.48497 * 109.46860 * 210.00248 * 9 7 5 12 12 H 1.48495 * 109.47008 * 330.00229 * 9 7 5 13 13 S 1.81398 * 109.47226 * 239.99964 * 2 1 3 14 14 C 1.81399 * 102.99861 * 64.99946 * 13 2 1 15 15 C 1.53004 * 109.46693 * 179.97438 * 14 13 2 16 16 H 1.08993 * 109.54144 * 60.11242 * 15 14 13 17 17 C 1.53103 * 109.50321 * 180.21460 * 15 14 13 18 18 N 1.47017 * 109.25606 * 176.78422 * 17 15 14 19 19 C 1.46900 * 110.99765 * 177.61039 * 18 17 15 20 20 C 1.47014 * 110.75303 * 301.38548 * 18 17 15 21 21 C 1.53096 * 109.25675 * 58.61803 * 20 18 17 22 22 O 1.43010 * 109.51074 * 299.99696 * 15 14 13 23 23 H 1.09000 * 109.47617 * 60.00338 * 1 2 3 24 24 H 1.09007 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47469 * 299.99968 * 1 2 3 26 26 H 1.08999 * 109.47833 * 305.00530 * 4 2 1 27 27 H 1.09005 * 109.47431 * 65.00614 * 4 2 1 28 28 H 0.97000 * 120.00148 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47429 * 60.00205 * 14 13 2 30 30 H 1.09002 * 109.47091 * 299.99590 * 14 13 2 31 31 H 1.09006 * 109.50645 * 56.85001 * 17 15 14 32 32 H 1.08995 * 109.54475 * 296.74136 * 17 15 14 33 33 H 1.09003 * 109.47032 * 187.58782 * 19 18 17 34 34 H 1.09006 * 109.47251 * 307.59140 * 19 18 17 35 35 H 1.09002 * 109.47211 * 67.58697 * 19 18 17 36 36 H 1.09004 * 109.50706 * 298.68119 * 20 18 17 37 37 H 1.08995 * 109.54210 * 178.57064 * 20 18 17 38 38 H 1.08997 * 109.50375 * 183.21864 * 21 20 18 39 39 H 1.08994 * 109.50924 * 63.08237 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5418 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5397 7 6 4.2304 -1.1933 2.3579 8 7 5.5410 -1.1001 2.4136 9 14 3.3015 -2.1096 3.6948 10 1 3.1711 -3.5395 3.3157 11 1 4.0448 -2.0029 4.9759 12 1 1.9504 -1.5148 3.8553 13 16 2.1347 -0.8551 -1.4811 14 6 1.5664 0.2153 -2.8308 15 6 2.0051 -0.3779 -4.1713 16 1 1.5708 -1.3704 -4.2903 17 6 1.5305 0.5277 -5.3108 18 7 2.0205 -0.0057 -6.5902 19 6 1.5389 0.8042 -7.7172 20 6 3.4882 -0.0903 -6.5915 21 6 3.9430 -0.9898 -5.4391 22 8 3.4316 -0.4733 -4.2074 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6053 -0.2617 2.1370 27 1 1.7517 -1.7715 1.2057 28 1 6.0254 -1.5068 3.1490 29 1 2.0001 1.2085 -2.7142 30 1 0.4792 0.2881 -2.8037 31 1 1.9214 1.5345 -5.1626 32 1 0.4410 0.5584 -5.3226 33 1 1.8014 0.3144 -8.6550 34 1 0.4558 0.9090 -7.6527 35 1 2.0021 1.7902 -7.6802 36 1 3.9104 0.9065 -6.4637 37 1 3.8283 -0.5111 -7.5376 38 1 5.0321 -1.0097 -5.4010 39 1 3.5651 -2.0001 -5.5949 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577868984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:57 Heat of formation + Delta-G solvation = -70.637740 kcal Electronic energy + Delta-G solvation = -17585.808209 eV Core-core repulsion = 14846.564407 eV Total energy + Delta-G solvation = -2739.243802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63673 -36.71256 -36.39281 -34.17649 -33.86386 -30.23376 -29.80612 -28.08644 -25.08579 -24.90709 -23.66520 -22.05492 -21.38046 -18.86976 -17.61363 -17.40082 -17.16446 -16.49499 -16.36854 -15.96425 -15.86676 -15.20851 -14.92102 -14.75542 -14.25958 -14.19703 -13.93132 -13.55016 -13.28520 -13.26705 -12.96337 -12.66219 -12.64049 -12.40480 -12.23924 -11.96541 -11.73111 -11.62919 -11.40783 -11.31448 -10.76585 -10.64351 -10.40996 -9.45998 -8.36119 -8.20413 -6.24993 0.88216 1.36641 1.38340 1.48991 1.93797 2.38894 2.75661 2.81704 3.12492 3.75763 3.88171 3.94513 4.00998 4.05877 4.18797 4.23727 4.27621 4.39442 4.50827 4.56846 4.57876 4.61237 4.65173 4.77472 4.86914 4.91260 4.96895 4.98639 4.99438 5.09892 5.25109 5.40415 5.65904 5.85244 5.93952 6.23652 6.34515 6.82105 7.36533 8.94515 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.034288 B = 0.004541 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.417969 B = 6164.132205 C = 6770.148484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.036 4.036 3 H 0.066 0.934 4 C 0.007 3.993 5 C -0.516 4.516 6 H 0.036 0.964 7 C 0.002 3.998 8 N -0.953 5.953 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.241 1.241 13 S -0.277 6.277 14 C -0.078 4.078 15 C 0.113 3.887 16 H 0.067 0.933 17 C 0.036 3.964 18 N -0.554 5.554 19 C 0.025 3.975 20 C 0.022 3.978 21 C 0.055 3.945 22 O -0.398 6.398 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.019 0.981 28 H 0.264 0.736 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.040 0.960 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.028 0.972 36 H 0.038 0.962 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.576 3.558 -18.744 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 H 0.084 0.916 4 C -0.031 4.031 5 C -0.554 4.554 6 H 0.054 0.946 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.164 1.164 13 S -0.050 6.050 14 C -0.226 4.226 15 C 0.054 3.946 16 H 0.085 0.915 17 C -0.094 4.094 18 N -0.279 5.279 19 C -0.122 4.122 20 C -0.106 4.106 21 C -0.022 4.022 22 O -0.317 6.317 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.925 2.159 -18.610 22.208 hybrid contribution 0.089 1.453 0.757 1.641 sum -11.836 3.612 -17.853 21.722 Atomic orbital electron populations 1.22071 0.91464 1.03112 1.02895 1.23048 0.98726 1.00197 0.94513 0.91551 1.19390 0.94698 0.95856 0.93189 1.21399 0.91942 1.33965 1.08087 0.94591 1.25976 0.95564 0.97125 1.00722 1.70081 1.08583 1.47282 1.33505 0.85718 0.79959 0.79275 0.78055 1.19768 1.21012 1.16423 1.87604 1.77764 1.37959 1.01640 1.23389 1.04308 1.00878 0.94060 1.21781 0.81759 0.98781 0.92243 0.91502 1.22726 1.02052 0.96008 0.88635 1.62217 1.09862 1.52495 1.03291 1.22454 1.01392 0.95120 0.93273 1.22804 0.87867 0.99415 1.00498 1.22823 0.99838 0.96699 0.82810 1.88168 1.20914 1.85638 1.37026 0.91035 0.91588 0.90840 0.94197 0.96261 0.92752 0.90562 0.86395 0.94145 0.87417 0.89934 0.90086 0.95358 0.94406 0.87513 0.87659 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.10 71.98 0.66 -3.27 16 2 C -0.04 -1.44 2.77 30.59 0.08 -1.35 16 3 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 4 C 0.01 0.32 3.51 29.85 0.10 0.43 16 5 C -0.52 -30.78 9.09 25.60 0.23 -30.55 16 6 H 0.04 2.41 7.85 -2.91 -0.02 2.39 16 7 C 0.00 0.13 5.47 84.66 0.46 0.59 16 8 N -0.95 -62.22 13.96 21.45 0.30 -61.92 16 9 Si 0.95 45.52 27.47 68.60 1.88 47.41 16 10 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 13 S -0.28 -11.34 20.10 -56.49 -1.14 -12.48 16 14 C -0.08 -2.26 5.37 71.98 0.39 -1.87 16 15 C 0.11 3.10 2.86 30.63 0.09 3.18 16 16 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 17 C 0.04 0.73 4.94 86.32 0.43 1.16 16 18 N -0.55 -10.70 4.99 -921.40 -4.59 -15.30 16 19 C 0.03 0.34 9.63 127.69 1.23 1.57 16 20 C 0.02 0.43 5.66 86.31 0.49 0.92 16 21 C 0.06 1.36 7.01 72.01 0.50 1.86 16 22 O -0.40 -13.13 10.07 -148.98 -1.50 -14.63 16 23 H 0.07 1.66 6.92 -2.39 -0.02 1.65 16 24 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.04 1.82 7.20 -2.39 -0.02 1.81 16 27 H 0.02 0.92 7.57 -2.38 -0.02 0.91 16 28 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.12 2.63 7.14 -2.39 -0.02 2.61 16 31 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.11 1.72 8.11 -2.39 -0.02 1.71 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.91 8.08 -2.38 -0.02 0.89 16 35 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -73.44 321.61 0.55 -72.89 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.93 Total: 11.35 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 4.66 Total: -27.33 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -4.29 Total: -77.22 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -1.50 Total: -14.63 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Atomic # 16 Polarization: -11.34 SS G_CDS: -1.14 Total: -12.48 kcal Total: -73.44 0.55 -72.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577868984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.255 kcal (2) G-P(sol) polarization free energy of solvation -73.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds