Wall clock time and date at job start Mon Mar 30 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 114.00122 * 2 1 4 4 C 1.52992 * 109.47196 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47221 * 305.00070 * 4 3 2 6 6 C 1.52997 * 109.47261 * 185.00299 * 4 3 2 7 7 N 1.46904 * 109.47264 * 180.02562 * 6 4 3 8 8 C 1.48566 * 110.99628 * 290.12036 * 7 6 4 9 9 C 1.54378 * 104.59376 * 200.95974 * 8 7 6 10 10 C 1.54258 * 105.05931 * 23.85692 * 9 8 7 11 11 O 1.42903 * 110.32520 * 118.99930 * 10 9 8 12 12 C 1.50702 * 110.31938 * 241.10222 * 10 9 8 13 13 H 1.08002 * 120.00299 * 118.55053 * 12 10 9 14 14 C 1.37884 * 119.99942 * 298.26612 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.48558 * 111.00165 * 174.70797 * 7 6 4 21 21 O 1.42902 * 109.47433 * 64.99925 * 4 3 2 22 22 C 1.42906 * 113.99887 * 270.00111 * 21 4 3 23 23 H 1.08994 * 109.47440 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47163 * 300.00424 * 1 2 3 25 25 H 1.09000 * 109.46777 * 60.00181 * 1 2 3 26 26 H 1.09003 * 109.46915 * 59.99474 * 3 2 1 27 27 H 1.08996 * 109.46929 * 299.99602 * 3 2 1 28 28 H 1.08990 * 109.47416 * 60.00023 * 6 4 3 29 29 H 1.09003 * 109.46928 * 299.99478 * 6 4 3 30 30 H 1.09003 * 110.41029 * 82.18130 * 8 7 6 31 31 H 1.09000 * 110.40833 * 319.74252 * 8 7 6 32 32 H 1.08995 * 110.32376 * 264.95634 * 9 8 7 33 33 H 1.09005 * 110.40494 * 142.78875 * 9 8 7 34 34 H 0.96699 * 113.99905 * 62.82283 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 36 36 H 1.08997 * 110.41640 * 40.25125 * 20 7 6 37 37 H 1.09005 * 110.40400 * 277.81578 * 20 7 6 38 38 H 1.08995 * 109.47341 * 299.99460 * 22 21 4 39 39 H 1.09005 * 109.47211 * 59.99723 * 22 21 4 40 40 H 1.09001 * 109.46548 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 6 4.1573 2.5769 0.1264 7 7 5.6217 2.4610 0.1264 8 6 6.1059 1.8319 1.3822 9 6 7.5861 2.2583 1.4853 10 6 7.6887 3.5541 0.6546 11 8 8.1064 4.6421 1.4816 12 6 8.6518 3.3674 -0.4893 13 1 8.3058 3.4641 -1.5078 14 6 9.9760 3.0789 -0.2356 15 7 10.3973 2.9611 1.0047 16 14 11.1714 2.8551 -1.6534 17 1 10.4530 3.0378 -2.9401 18 1 12.2591 3.8606 -1.5471 19 1 11.7527 1.4896 -1.6001 20 6 6.2620 3.8015 0.1194 21 8 3.9659 0.5792 -1.2201 22 6 4.0473 -0.8464 -1.1647 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8465 0.8900 27 1 1.6887 1.8464 -0.8900 28 1 3.8291 3.0387 1.0575 29 1 3.8420 3.1931 -0.7157 30 1 6.0265 0.7466 1.3189 31 1 5.5420 2.2060 2.2367 32 1 8.2322 1.4874 1.0657 33 1 7.8542 2.4523 2.5239 34 1 8.9875 4.5297 1.8640 35 1 11.3289 2.7578 1.1832 36 1 5.7226 4.4839 0.7763 37 1 6.3000 4.1992 -0.8947 38 1 4.7579 -1.1400 -0.3921 39 1 3.0653 -1.2576 -0.9304 40 1 4.3804 -1.2290 -2.1295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595557161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:35 Heat of formation + Delta-G solvation = -132.108744 kcal Electronic energy + Delta-G solvation = -20655.191011 eV Core-core repulsion = 17470.528755 eV Total energy + Delta-G solvation = -3184.662256 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.07132 -38.00022 -36.79645 -34.78375 -32.03793 -31.70095 -29.08545 -27.91390 -26.96357 -25.89000 -24.97237 -23.56422 -21.54960 -20.05036 -19.30596 -17.00423 -16.83576 -16.63085 -16.01796 -15.27964 -14.95410 -14.82943 -14.62777 -14.08808 -13.86663 -13.72989 -13.25367 -12.70250 -12.51124 -12.23848 -11.94991 -11.71112 -11.58280 -11.49576 -11.16273 -10.95179 -10.91838 -10.54534 -10.45611 -10.30898 -10.24298 -9.88157 -9.83105 -9.22367 -8.97477 -8.51134 -8.06638 -7.74074 -6.10508 -4.15312 3.29755 3.37927 3.44355 3.53025 4.01878 4.41515 4.60095 5.01219 5.09395 5.12058 5.18651 5.21325 5.25885 5.41866 5.46963 5.53450 5.70193 5.73091 5.80603 5.85190 5.95899 6.03486 6.08610 6.20151 6.25305 6.40651 6.56183 6.92569 6.97204 7.11691 7.27280 7.48321 7.63219 7.72824 7.77953 7.92547 8.28213 8.87853 9.48663 9.57194 10.97045 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.031645 B = 0.004964 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.613917 B = 5639.728878 C = 6081.243643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.038 3.962 4 C 0.101 3.899 5 H 0.066 0.934 6 C 0.049 3.951 7 N -0.487 5.487 8 C 0.030 3.970 9 C -0.119 4.119 10 C 0.248 3.752 11 O -0.596 6.596 12 C -0.515 4.515 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.902 5.902 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.054 3.946 21 O -0.360 6.360 22 C 0.035 3.965 23 H 0.083 0.917 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.382 0.618 35 H 0.264 0.736 36 H 0.029 0.971 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.048 0.952 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 -5.008 0.328 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.039 4.039 4 C 0.042 3.958 5 H 0.084 0.916 6 C -0.080 4.080 7 N -0.211 5.211 8 C -0.098 4.098 9 C -0.158 4.158 10 C 0.209 3.791 11 O -0.405 6.405 12 C -0.553 4.553 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.543 5.543 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.074 4.074 21 O -0.278 6.278 22 C -0.062 4.062 23 H 0.102 0.898 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.233 0.767 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.571 -5.180 -0.389 16.415 hybrid contribution 0.650 0.027 0.439 0.785 sum -14.921 -5.152 0.050 15.786 Atomic orbital electron populations 1.22726 0.81394 1.02526 0.99873 1.87882 1.19486 1.27939 1.95402 1.23238 0.94934 0.84971 1.00762 1.22042 0.89683 0.95346 0.88689 0.91606 1.22233 0.90693 0.94347 1.00765 1.65285 1.03162 1.17969 1.34699 1.23201 0.98116 0.98733 0.89744 1.22827 0.92135 1.01326 0.99467 1.19256 0.89317 0.82610 0.87962 1.86074 1.39324 1.46818 1.68255 1.21705 0.93368 1.46989 0.93258 0.91853 1.25008 0.98364 0.94345 0.95926 1.69707 1.16432 1.49903 1.18262 0.86420 0.80677 0.77566 0.82632 1.19632 1.21081 1.21024 1.22991 0.95555 0.88395 1.00445 1.87968 1.87720 1.19318 1.32785 1.22766 1.00091 0.81584 1.01761 0.89812 0.94246 0.94114 0.92680 0.92321 0.93884 0.90192 0.91867 0.95521 0.90641 0.93129 0.76699 0.92607 0.95236 0.90402 0.94496 0.93371 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.80 8.83 -40.08 -0.35 -5.15 16 3 C 0.04 0.47 5.60 37.15 0.21 0.68 16 4 C 0.10 1.51 2.50 -26.74 -0.07 1.45 16 5 H 0.07 1.00 6.90 -51.93 -0.36 0.64 16 6 C 0.05 0.79 4.50 -3.82 -0.02 0.77 16 7 N -0.49 -9.86 5.24 -229.97 -1.20 -11.06 16 8 C 0.03 0.60 5.74 -2.18 -0.01 0.59 16 9 C -0.12 -2.83 5.56 -25.35 -0.14 -2.97 16 10 C 0.25 6.32 1.06 -90.39 -0.10 6.23 16 11 O -0.60 -15.74 12.95 -35.23 -0.46 -16.20 16 12 C -0.51 -14.23 8.09 -34.44 -0.28 -14.51 16 13 H 0.06 1.78 7.53 -52.49 -0.40 1.39 16 14 C 0.06 1.74 5.02 -17.82 -0.09 1.66 16 15 N -0.90 -24.57 10.80 55.43 0.60 -23.98 16 16 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.05 1.20 5.76 -2.19 -0.01 1.18 16 21 O -0.36 -6.10 10.21 -40.08 -0.41 -6.51 16 22 C 0.03 0.49 10.71 101.05 1.08 1.57 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.63 7.88 -51.93 -0.41 0.23 16 29 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 30 H 0.06 1.20 7.76 -51.93 -0.40 0.79 16 31 H 0.03 0.49 7.82 -51.93 -0.41 0.09 16 32 H 0.07 1.97 7.25 -51.93 -0.38 1.59 16 33 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 34 H 0.38 10.22 7.28 45.56 0.33 10.55 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.03 0.63 7.94 -51.93 -0.41 0.22 16 37 H 0.08 1.76 7.67 -51.93 -0.40 1.36 16 38 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 39 H 0.05 0.64 6.40 -51.93 -0.33 0.30 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -29.60 320.24 -6.42 -36.02 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.09 Total: 7.68 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 1.69 Total: -1.97 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.61 Total: -35.04 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -1.22 Total: -27.86 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.60 -6.42 -36.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595557161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.091 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds