Wall clock time and date at job start Mon Mar 30 2020 05:47:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42908 * 114.00122 * 2 1
4 4 C 1.52992 * 109.47196 * 179.97438 * 3 2 1
5 5 H 1.09004 * 109.47221 * 305.00070 * 4 3 2
6 6 C 1.52997 * 109.47261 * 185.00299 * 4 3 2
7 7 N 1.46904 * 109.47264 * 180.02562 * 6 4 3
8 8 C 1.48566 * 110.99628 * 290.12036 * 7 6 4
9 9 C 1.54378 * 104.59376 * 200.95974 * 8 7 6
10 10 C 1.54258 * 105.05931 * 23.85692 * 9 8 7
11 11 O 1.42903 * 110.32520 * 118.99930 * 10 9 8
12 12 C 1.50702 * 110.31938 * 241.10222 * 10 9 8
13 13 H 1.08002 * 120.00299 * 118.55053 * 12 10 9
14 14 C 1.37884 * 119.99942 * 298.26612 * 12 10 9
15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10
16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10
17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12
18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12
19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12
20 20 C 1.48558 * 111.00165 * 174.70797 * 7 6 4
21 21 O 1.42902 * 109.47433 * 64.99925 * 4 3 2
22 22 C 1.42906 * 113.99887 * 270.00111 * 21 4 3
23 23 H 1.08994 * 109.47440 * 179.97438 * 1 2 3
24 24 H 1.08997 * 109.47163 * 300.00424 * 1 2 3
25 25 H 1.09000 * 109.46777 * 60.00181 * 1 2 3
26 26 H 1.09003 * 109.46915 * 59.99474 * 3 2 1
27 27 H 1.08996 * 109.46929 * 299.99602 * 3 2 1
28 28 H 1.08990 * 109.47416 * 60.00023 * 6 4 3
29 29 H 1.09003 * 109.46928 * 299.99478 * 6 4 3
30 30 H 1.09003 * 110.41029 * 82.18130 * 8 7 6
31 31 H 1.09000 * 110.40833 * 319.74252 * 8 7 6
32 32 H 1.08995 * 110.32376 * 264.95634 * 9 8 7
33 33 H 1.09005 * 110.40494 * 142.78875 * 9 8 7
34 34 H 0.96699 * 113.99905 * 62.82283 * 11 10 9
35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12
36 36 H 1.08997 * 110.41640 * 40.25125 * 20 7 6
37 37 H 1.09005 * 110.40400 * 277.81578 * 20 7 6
38 38 H 1.08995 * 109.47341 * 299.99460 * 22 21 4
39 39 H 1.09005 * 109.47211 * 59.99723 * 22 21 4
40 40 H 1.09001 * 109.46548 * 179.97438 * 22 21 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 1 3.8508 0.5685 0.8427
6 6 4.1573 2.5769 0.1264
7 7 5.6217 2.4610 0.1264
8 6 6.1059 1.8319 1.3822
9 6 7.5861 2.2583 1.4853
10 6 7.6887 3.5541 0.6546
11 8 8.1064 4.6421 1.4816
12 6 8.6518 3.3674 -0.4893
13 1 8.3058 3.4641 -1.5078
14 6 9.9760 3.0789 -0.2356
15 7 10.3973 2.9611 1.0047
16 14 11.1714 2.8551 -1.6534
17 1 10.4530 3.0378 -2.9401
18 1 12.2591 3.8606 -1.5471
19 1 11.7527 1.4896 -1.6001
20 6 6.2620 3.8015 0.1194
21 8 3.9659 0.5792 -1.2201
22 6 4.0473 -0.8464 -1.1647
23 1 -0.3634 -1.0276 -0.0005
24 1 -0.3633 0.5139 0.8899
25 1 -0.3633 0.5138 -0.8900
26 1 1.6886 1.8465 0.8900
27 1 1.6887 1.8464 -0.8900
28 1 3.8291 3.0387 1.0575
29 1 3.8420 3.1931 -0.7157
30 1 6.0265 0.7466 1.3189
31 1 5.5420 2.2060 2.2367
32 1 8.2322 1.4874 1.0657
33 1 7.8542 2.4523 2.5239
34 1 8.9875 4.5297 1.8640
35 1 11.3289 2.7578 1.1832
36 1 5.7226 4.4839 0.7763
37 1 6.3000 4.1992 -0.8947
38 1 4.7579 -1.1400 -0.3921
39 1 3.0653 -1.2576 -0.9304
40 1 4.3804 -1.2290 -2.1295
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000595557161.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:47:35
Heat of formation + Delta-G solvation = -132.108744 kcal
Electronic energy + Delta-G solvation = -20655.191011 eV
Core-core repulsion = 17470.528755 eV
Total energy + Delta-G solvation = -3184.662256 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.07132 -38.00022 -36.79645 -34.78375 -32.03793 -31.70095 -29.08545 -27.91390
-26.96357 -25.89000 -24.97237 -23.56422 -21.54960 -20.05036 -19.30596 -17.00423
-16.83576 -16.63085 -16.01796 -15.27964 -14.95410 -14.82943 -14.62777 -14.08808
-13.86663 -13.72989 -13.25367 -12.70250 -12.51124 -12.23848 -11.94991 -11.71112
-11.58280 -11.49576 -11.16273 -10.95179 -10.91838 -10.54534 -10.45611 -10.30898
-10.24298 -9.88157 -9.83105 -9.22367 -8.97477 -8.51134 -8.06638 -7.74074
-6.10508 -4.15312 3.29755 3.37927 3.44355 3.53025 4.01878 4.41515
4.60095 5.01219 5.09395 5.12058 5.18651 5.21325 5.25885 5.41866
5.46963 5.53450 5.70193 5.73091 5.80603 5.85190 5.95899 6.03486
6.08610 6.20151 6.25305 6.40651 6.56183 6.92569 6.97204 7.11691
7.27280 7.48321 7.63219 7.72824 7.77953 7.92547 8.28213 8.87853
9.48663 9.57194 10.97045
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.031645 B = 0.004964 C = 0.004603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 884.613917 B = 5639.728878 C = 6081.243643
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.388 6.388
3 C 0.038 3.962
4 C 0.101 3.899
5 H 0.066 0.934
6 C 0.049 3.951
7 N -0.487 5.487
8 C 0.030 3.970
9 C -0.119 4.119
10 C 0.248 3.752
11 O -0.596 6.596
12 C -0.515 4.515
13 H 0.063 0.937
14 C 0.064 3.936
15 N -0.902 5.902
16 Si 0.899 3.101
17 H -0.272 1.272
18 H -0.285 1.285
19 H -0.284 1.284
20 C 0.054 3.946
21 O -0.360 6.360
22 C 0.035 3.965
23 H 0.083 0.917
24 H 0.039 0.961
25 H 0.040 0.960
26 H 0.055 0.945
27 H 0.059 0.941
28 H 0.043 0.957
29 H 0.080 0.920
30 H 0.063 0.937
31 H 0.027 0.973
32 H 0.075 0.925
33 H 0.050 0.950
34 H 0.382 0.618
35 H 0.264 0.736
36 H 0.029 0.971
37 H 0.078 0.922
38 H 0.036 0.964
39 H 0.048 0.952
40 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.439 -5.008 0.328 16.234
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.307 6.307
3 C -0.039 4.039
4 C 0.042 3.958
5 H 0.084 0.916
6 C -0.080 4.080
7 N -0.211 5.211
8 C -0.098 4.098
9 C -0.158 4.158
10 C 0.209 3.791
11 O -0.405 6.405
12 C -0.553 4.553
13 H 0.081 0.919
14 C -0.136 4.136
15 N -0.543 5.543
16 Si 0.727 3.273
17 H -0.196 1.196
18 H -0.211 1.211
19 H -0.210 1.210
20 C -0.074 4.074
21 O -0.278 6.278
22 C -0.062 4.062
23 H 0.102 0.898
24 H 0.058 0.942
25 H 0.059 0.941
26 H 0.073 0.927
27 H 0.077 0.923
28 H 0.061 0.939
29 H 0.098 0.902
30 H 0.081 0.919
31 H 0.045 0.955
32 H 0.094 0.906
33 H 0.069 0.931
34 H 0.233 0.767
35 H 0.074 0.926
36 H 0.048 0.952
37 H 0.096 0.904
38 H 0.055 0.945
39 H 0.066 0.934
40 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -15.571 -5.180 -0.389 16.415
hybrid contribution 0.650 0.027 0.439 0.785
sum -14.921 -5.152 0.050 15.786
Atomic orbital electron populations
1.22726 0.81394 1.02526 0.99873 1.87882 1.19486 1.27939 1.95402
1.23238 0.94934 0.84971 1.00762 1.22042 0.89683 0.95346 0.88689
0.91606 1.22233 0.90693 0.94347 1.00765 1.65285 1.03162 1.17969
1.34699 1.23201 0.98116 0.98733 0.89744 1.22827 0.92135 1.01326
0.99467 1.19256 0.89317 0.82610 0.87962 1.86074 1.39324 1.46818
1.68255 1.21705 0.93368 1.46989 0.93258 0.91853 1.25008 0.98364
0.94345 0.95926 1.69707 1.16432 1.49903 1.18262 0.86420 0.80677
0.77566 0.82632 1.19632 1.21081 1.21024 1.22991 0.95555 0.88395
1.00445 1.87968 1.87720 1.19318 1.32785 1.22766 1.00091 0.81584
1.01761 0.89812 0.94246 0.94114 0.92680 0.92321 0.93884 0.90192
0.91867 0.95521 0.90641 0.93129 0.76699 0.92607 0.95236 0.90402
0.94496 0.93371 0.90431
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 11.01 101.05 1.11 1.38 16
2 O -0.39 -4.80 8.83 -40.08 -0.35 -5.15 16
3 C 0.04 0.47 5.60 37.15 0.21 0.68 16
4 C 0.10 1.51 2.50 -26.74 -0.07 1.45 16
5 H 0.07 1.00 6.90 -51.93 -0.36 0.64 16
6 C 0.05 0.79 4.50 -3.82 -0.02 0.77 16
7 N -0.49 -9.86 5.24 -229.97 -1.20 -11.06 16
8 C 0.03 0.60 5.74 -2.18 -0.01 0.59 16
9 C -0.12 -2.83 5.56 -25.35 -0.14 -2.97 16
10 C 0.25 6.32 1.06 -90.39 -0.10 6.23 16
11 O -0.60 -15.74 12.95 -35.23 -0.46 -16.20 16
12 C -0.51 -14.23 8.09 -34.44 -0.28 -14.51 16
13 H 0.06 1.78 7.53 -52.49 -0.40 1.39 16
14 C 0.06 1.74 5.02 -17.82 -0.09 1.66 16
15 N -0.90 -24.57 10.80 55.43 0.60 -23.98 16
16 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16
17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
20 C 0.05 1.20 5.76 -2.19 -0.01 1.18 16
21 O -0.36 -6.10 10.21 -40.08 -0.41 -6.51 16
22 C 0.03 0.49 10.71 101.05 1.08 1.57 16
23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
24 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16
25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16
26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.04 0.63 7.88 -51.93 -0.41 0.23 16
29 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16
30 H 0.06 1.20 7.76 -51.93 -0.40 0.79 16
31 H 0.03 0.49 7.82 -51.93 -0.41 0.09 16
32 H 0.07 1.97 7.25 -51.93 -0.38 1.59 16
33 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16
34 H 0.38 10.22 7.28 45.56 0.33 10.55 16
35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16
36 H 0.03 0.63 7.94 -51.93 -0.41 0.22 16
37 H 0.08 1.76 7.67 -51.93 -0.40 1.36 16
38 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16
39 H 0.05 0.64 6.40 -51.93 -0.33 0.30 16
40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
LS Contribution 320.24 15.07 4.83 4.83
Total: -1.00 -29.60 320.24 -6.42 -36.02
By element:
Atomic # 1 Polarization: 13.77 SS G_CDS: -6.09 Total: 7.68 kcal
Atomic # 6 Polarization: -3.66 SS G_CDS: 1.69 Total: -1.97 kcal
Atomic # 7 Polarization: -34.43 SS G_CDS: -0.61 Total: -35.04 kcal
Atomic # 8 Polarization: -26.64 SS G_CDS: -1.22 Total: -27.86 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -29.60 -6.42 -36.02 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595557161.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.091 kcal
(2) G-P(sol) polarization free energy of solvation -29.599 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.109 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds