Wall clock time and date at job start Mon Mar 30 2020 05:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99984 * 2 1 4 4 H 1.48504 * 109.47055 * 269.99848 * 3 2 1 5 5 H 1.48501 * 109.47157 * 30.00125 * 3 2 1 6 6 H 1.48507 * 109.46975 * 150.00077 * 3 2 1 7 7 C 1.37880 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53517 * 114.16669 * 180.02562 * 9 7 2 11 11 N 1.47477 * 87.93050 * 220.32804 * 10 9 7 12 12 C 1.38539 * 111.00252 * 138.70332 * 11 10 9 13 13 N 1.32859 * 120.44571 * 359.96994 * 12 11 10 14 14 C 1.31753 * 120.50017 * 179.97438 * 13 12 11 15 15 N 1.31604 * 121.74861 * 0.12997 * 14 13 12 16 16 C 1.33117 * 121.28169 * 0.02562 * 15 14 13 17 17 C 1.37309 * 118.93293 * 359.74631 * 16 15 14 18 18 C 1.50337 * 122.87429 * 180.45507 * 17 16 15 19 19 C 1.52827 * 110.45410 * 342.28405 * 18 17 16 20 20 C 1.53319 * 108.45366 * 50.81391 * 19 18 17 21 21 C 1.50456 * 118.46544 * 179.37376 * 16 15 14 22 22 C 1.47472 * 87.83856 * 27.00907 * 11 10 9 23 23 H 0.97003 * 119.99741 * 359.97438 * 1 2 3 24 24 H 1.09000 * 113.38520 * 313.07382 * 9 7 2 25 25 H 1.09001 * 113.48059 * 105.55689 * 10 9 7 26 26 H 1.09006 * 113.53124 * 335.09944 * 10 9 7 27 27 H 1.07998 * 119.12779 * 180.41421 * 14 13 12 28 28 H 1.08994 * 109.30658 * 102.58825 * 18 17 16 29 29 H 1.08996 * 109.29998 * 221.98422 * 18 17 16 30 30 H 1.08993 * 109.63980 * 170.50943 * 19 18 17 31 31 H 1.09007 * 109.63797 * 290.91878 * 19 18 17 32 32 H 1.09006 * 109.62499 * 50.08814 * 20 19 18 33 33 H 1.09003 * 109.63076 * 170.47221 * 20 19 18 34 34 H 1.08998 * 109.30656 * 282.87218 * 21 16 15 35 35 H 1.09003 * 109.30094 * 42.25545 * 21 16 15 36 36 H 1.09005 * 113.48092 * 87.75693 * 22 11 10 37 37 H 1.08998 * 113.47952 * 218.22789 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.1496 -3.7438 0.0018 11 7 1.2082 -4.3587 -0.9525 12 6 1.8863 -5.0457 -1.9462 13 7 3.2143 -5.0855 -1.9510 14 6 3.8604 -5.7389 -2.8952 15 7 3.2250 -6.3683 -3.8607 16 6 1.8954 -6.3716 -3.9257 17 6 1.1814 -5.7070 -2.9593 18 6 -0.3212 -5.6617 -2.9411 19 6 -0.8836 -6.0435 -4.3098 20 6 -0.2369 -7.3622 -4.7496 21 6 1.2349 -7.0994 -5.0648 22 6 0.8565 -2.9973 -1.3969 23 1 -0.4850 0.8401 0.0004 24 1 0.4426 -2.5319 0.7310 25 1 2.1856 -4.2525 0.9652 26 1 3.1396 -3.5662 -0.4183 27 1 4.9399 -5.7625 -2.8738 28 1 -0.6936 -6.3594 -2.1911 29 1 -0.6482 -4.6539 -2.6854 30 1 -1.9638 -6.1707 -4.2395 31 1 -0.6532 -5.2601 -5.0320 32 1 -0.3142 -8.0940 -3.9455 33 1 -0.7429 -7.7398 -5.6382 34 1 1.3074 -6.4950 -5.9690 35 1 1.7435 -8.0495 -5.2285 36 1 1.5010 -2.6194 -2.1906 37 1 -0.2034 -2.8731 -1.6188 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596433443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:08 Heat of formation + Delta-G solvation = 75.836667 kcal Electronic energy + Delta-G solvation = -19370.543757 eV Core-core repulsion = 16534.500361 eV Total energy + Delta-G solvation = -2836.043395 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.35405 -38.95869 -36.92878 -33.71735 -32.41340 -31.32642 -30.02445 -28.10687 -25.19304 -24.98185 -23.86456 -23.40459 -21.53079 -19.94546 -18.82103 -17.46775 -17.26734 -16.02733 -15.44473 -14.91127 -14.59751 -14.28245 -14.20988 -14.04431 -13.91485 -13.23107 -12.99861 -12.70887 -12.11660 -12.07476 -11.66572 -11.34088 -11.27262 -11.01813 -10.92943 -10.80692 -10.55749 -10.29575 -10.06218 -9.85765 -9.49020 -9.16849 -9.03703 -8.77241 -8.52860 -8.11908 -6.13415 -4.17721 1.23994 1.34754 3.25869 3.33097 3.36860 3.94823 4.17041 4.23889 4.38177 4.49512 4.82972 4.83997 4.88591 5.06775 5.16030 5.37493 5.41280 5.52748 5.57765 5.67728 5.78935 5.88268 5.96131 6.00712 6.04236 6.21045 6.26732 6.33785 6.37354 6.43133 6.65328 6.75567 6.84899 6.88496 7.40560 7.62662 7.79224 7.90541 8.27202 8.44190 8.86235 9.47961 10.96174 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.005472 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.785463 B = 5115.365173 C = 5559.083246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.043 3.957 10 C 0.006 3.994 11 N -0.444 5.444 12 C 0.338 3.662 13 N -0.550 5.550 14 C 0.304 3.696 15 N -0.549 5.549 16 C 0.175 3.825 17 C -0.180 4.180 18 C -0.064 4.064 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.067 4.067 22 C 0.027 3.973 23 H 0.263 0.737 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.190 0.810 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 -12.138 -8.575 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.024 3.976 10 C -0.121 4.121 11 N -0.163 5.163 12 C 0.098 3.902 13 N -0.269 5.269 14 C 0.014 3.986 15 N -0.265 5.265 16 C 0.034 3.966 17 C -0.187 4.187 18 C -0.102 4.102 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.105 4.105 22 C -0.099 4.099 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.206 0.794 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.110 -12.493 -8.327 15.014 hybrid contribution 0.334 1.282 -0.316 1.362 sum 0.224 -11.210 -8.643 14.157 Atomic orbital electron populations 1.69958 1.06017 1.26956 1.49409 1.25029 0.94856 0.99300 0.94377 0.86577 0.80009 0.83169 0.78199 1.20637 1.21074 1.19662 1.20999 0.92958 0.89845 1.51416 0.92065 1.20179 0.94504 0.91476 0.91433 1.24092 0.97329 0.96035 0.94660 1.66346 1.27028 1.14876 1.08079 1.21172 0.87974 0.91119 0.89949 1.68504 1.09146 1.21148 1.28064 1.24611 1.00692 0.88173 0.85142 1.68313 1.09578 1.22298 1.26318 1.21064 0.89264 0.92309 0.94006 1.20684 0.98511 1.02259 0.97233 1.20199 0.89176 1.03479 0.97355 1.21612 1.00048 0.97233 0.97020 1.21580 0.94281 0.98066 1.01714 1.20324 0.95045 1.00213 0.94873 1.24201 1.00775 0.82098 1.02846 0.92742 0.91320 0.91664 0.89237 0.79351 0.90355 0.89769 0.91059 0.91638 0.91480 0.90937 0.89639 0.89650 0.92250 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 13.26 55.43 0.74 -24.08 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.51 -13.75 8.82 -34.44 -0.30 -14.06 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.04 1.06 3.77 -91.24 -0.34 0.72 16 10 C 0.01 0.14 6.96 -7.55 -0.05 0.09 16 11 N -0.44 -9.15 5.75 -182.43 -1.05 -10.20 16 12 C 0.34 6.56 5.84 -154.74 -0.90 5.65 16 13 N -0.55 -10.50 8.36 -13.78 -0.12 -10.62 16 14 C 0.30 4.98 12.28 -92.35 -1.13 3.85 16 15 N -0.55 -8.89 10.31 -11.07 -0.11 -9.01 16 16 C 0.18 2.69 6.62 -82.49 -0.55 2.15 16 17 C -0.18 -3.02 5.75 -104.47 -0.60 -3.62 16 18 C -0.06 -0.91 5.32 -28.15 -0.15 -1.06 16 19 C -0.12 -1.33 5.98 -26.65 -0.16 -1.49 16 20 C -0.12 -1.14 5.97 -26.67 -0.16 -1.30 16 21 C -0.07 -0.76 5.96 -28.11 -0.17 -0.92 16 22 C 0.03 0.59 6.33 -7.56 -0.05 0.55 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.07 1.81 8.11 -51.93 -0.42 1.39 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.09 2.01 6.64 -51.93 -0.34 1.67 16 27 H 0.19 2.40 8.06 -52.49 -0.42 1.98 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.33 6.30 -51.93 -0.33 1.00 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 32 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.40 7.85 -51.93 -0.41 0.99 16 37 H 0.07 1.66 7.48 -51.93 -0.39 1.27 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -28.90 299.22 -10.96 -39.86 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.23 Total: 1.50 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -4.67 Total: -7.73 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.54 Total: -53.90 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.90 -10.96 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596433443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.696 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds