Wall clock time and date at job start Mon Mar 30 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99984 * 2 1 4 4 H 1.48504 * 109.47055 * 269.99848 * 3 2 1 5 5 H 1.48501 * 109.47157 * 30.00125 * 3 2 1 6 6 H 1.48507 * 109.46975 * 150.00077 * 3 2 1 7 7 C 1.37880 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53517 * 114.16669 * 180.02562 * 9 7 2 11 11 N 1.47477 * 87.93050 * 220.32804 * 10 9 7 12 12 C 1.38539 * 111.00252 * 138.70332 * 11 10 9 13 13 N 1.32859 * 120.44571 * 359.96994 * 12 11 10 14 14 C 1.31753 * 120.50017 * 179.97438 * 13 12 11 15 15 N 1.31604 * 121.74861 * 0.12997 * 14 13 12 16 16 C 1.33117 * 121.28169 * 0.02562 * 15 14 13 17 17 C 1.37309 * 118.93293 * 359.74631 * 16 15 14 18 18 C 1.50337 * 122.87429 * 180.45507 * 17 16 15 19 19 C 1.52827 * 110.45410 * 342.28405 * 18 17 16 20 20 C 1.53319 * 108.45366 * 50.81391 * 19 18 17 21 21 C 1.50456 * 118.46544 * 179.37376 * 16 15 14 22 22 C 1.47472 * 87.83856 * 27.00907 * 11 10 9 23 23 H 0.97003 * 119.99741 * 359.97438 * 1 2 3 24 24 H 1.09000 * 113.38520 * 313.07382 * 9 7 2 25 25 H 1.09001 * 113.48059 * 105.55689 * 10 9 7 26 26 H 1.09006 * 113.53124 * 335.09944 * 10 9 7 27 27 H 1.07998 * 119.12779 * 180.41421 * 14 13 12 28 28 H 1.08994 * 109.30658 * 102.58825 * 18 17 16 29 29 H 1.08996 * 109.29998 * 221.98422 * 18 17 16 30 30 H 1.08993 * 109.63980 * 170.50943 * 19 18 17 31 31 H 1.09007 * 109.63797 * 290.91878 * 19 18 17 32 32 H 1.09006 * 109.62499 * 50.08814 * 20 19 18 33 33 H 1.09003 * 109.63076 * 170.47221 * 20 19 18 34 34 H 1.08998 * 109.30656 * 282.87218 * 21 16 15 35 35 H 1.09003 * 109.30094 * 42.25545 * 21 16 15 36 36 H 1.09005 * 113.48092 * 87.75693 * 22 11 10 37 37 H 1.08998 * 113.47952 * 218.22789 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.1496 -3.7438 0.0018 11 7 1.2082 -4.3587 -0.9525 12 6 1.8863 -5.0457 -1.9462 13 7 3.2143 -5.0855 -1.9510 14 6 3.8604 -5.7389 -2.8952 15 7 3.2250 -6.3683 -3.8607 16 6 1.8954 -6.3716 -3.9257 17 6 1.1814 -5.7070 -2.9593 18 6 -0.3212 -5.6617 -2.9411 19 6 -0.8836 -6.0435 -4.3098 20 6 -0.2369 -7.3622 -4.7496 21 6 1.2349 -7.0994 -5.0648 22 6 0.8565 -2.9973 -1.3969 23 1 -0.4850 0.8401 0.0004 24 1 0.4426 -2.5319 0.7310 25 1 2.1856 -4.2525 0.9652 26 1 3.1396 -3.5662 -0.4183 27 1 4.9399 -5.7625 -2.8738 28 1 -0.6936 -6.3594 -2.1911 29 1 -0.6482 -4.6539 -2.6854 30 1 -1.9638 -6.1707 -4.2395 31 1 -0.6532 -5.2601 -5.0320 32 1 -0.3142 -8.0940 -3.9455 33 1 -0.7429 -7.7398 -5.6382 34 1 1.3074 -6.4950 -5.9690 35 1 1.7435 -8.0495 -5.2285 36 1 1.5010 -2.6194 -2.1906 37 1 -0.2034 -2.8731 -1.6188 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596433443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:07 Heat of formation + Delta-G solvation = 59.832264 kcal Electronic energy + Delta-G solvation = -19371.237760 eV Core-core repulsion = 16534.500361 eV Total energy + Delta-G solvation = -2836.737398 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.74867 -40.55250 -37.99241 -35.32927 -34.20522 -32.52489 -31.18340 -29.78770 -26.89607 -26.75558 -25.13879 -24.60860 -22.90607 -21.11414 -20.50595 -19.06078 -18.80262 -17.69279 -16.69293 -16.56191 -16.26090 -15.74252 -15.63827 -15.28176 -14.93073 -14.45726 -14.33306 -14.05024 -13.82670 -13.35773 -13.21940 -13.05543 -12.86117 -12.49723 -12.41293 -12.05429 -11.82170 -11.69273 -11.54452 -11.28049 -11.24449 -10.99742 -10.58301 -10.50858 -10.16836 -9.67615 -8.19983 -6.31026 -0.10757 0.02149 1.41208 1.42659 1.53236 2.39321 2.58827 2.83219 3.06510 3.09162 3.23220 3.64666 3.80713 3.86109 3.99332 4.14849 4.21921 4.33797 4.35204 4.47820 4.57199 4.61475 4.72538 4.76551 4.83527 4.91827 4.97450 5.01116 5.02020 5.16213 5.19194 5.27302 5.41955 5.49193 5.56712 5.77649 6.05267 6.18324 6.23402 6.76720 7.11000 7.37675 8.89744 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.005472 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.785463 B = 5115.365173 C = 5559.083246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.030 3.970 10 C 0.019 3.981 11 N -0.436 5.436 12 C 0.305 3.695 13 N -0.574 5.574 14 C 0.297 3.703 15 N -0.548 5.548 16 C 0.176 3.824 17 C -0.186 4.186 18 C -0.064 4.064 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.066 4.066 22 C 0.045 3.955 23 H 0.265 0.735 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.221 0.779 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.043 0.957 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 -13.311 -10.356 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.179 4.179 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.011 3.989 10 C -0.109 4.109 11 N -0.155 5.155 12 C 0.066 3.934 13 N -0.293 5.293 14 C 0.008 3.992 15 N -0.264 5.264 16 C 0.033 3.967 17 C -0.192 4.192 18 C -0.102 4.102 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.104 4.104 22 C -0.082 4.082 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.237 0.763 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.061 0.939 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.099 -13.686 -10.110 17.015 hybrid contribution 0.312 1.551 0.189 1.593 sum 0.411 -12.135 -9.920 15.679 Atomic orbital electron populations 1.70059 1.07312 1.27840 1.50256 1.25771 0.95651 1.02506 0.93994 0.85579 0.78863 0.79108 0.78284 1.20203 1.20498 1.19122 1.21256 0.92929 0.91152 1.51574 0.92556 1.20087 0.94534 0.92106 0.92175 1.23852 0.96661 0.94917 0.95428 1.66284 1.27042 1.13806 1.08404 1.21279 0.88644 0.92537 0.90930 1.68443 1.09261 1.22214 1.29366 1.25257 1.02053 0.87449 0.84484 1.68448 1.10087 1.21909 1.25947 1.21808 0.89087 0.91370 0.94392 1.20987 0.99782 1.01763 0.96630 1.20246 0.87822 1.02340 0.99825 1.21619 1.01232 0.98023 0.94580 1.21590 0.93086 0.97098 1.03135 1.20514 0.95928 1.00481 0.93428 1.23769 1.00005 0.83577 1.00858 0.92569 0.93742 0.90865 0.89953 0.76265 0.90181 0.91971 0.89063 0.91829 0.91453 0.87703 0.88252 0.88123 0.93905 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.35 13.26 21.45 0.28 -52.06 16 2 C 0.02 1.15 5.46 84.65 0.46 1.61 16 3 Si 0.96 42.97 29.54 68.60 2.03 44.99 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.53 -29.16 8.82 25.60 0.23 -28.93 16 8 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.03 1.54 3.77 -11.19 -0.04 1.50 16 10 C 0.02 0.87 6.96 83.57 0.58 1.45 16 11 N -0.44 -18.46 5.75 -731.08 -4.21 -22.67 16 12 C 0.31 11.93 5.84 133.30 0.78 12.70 16 13 N -0.57 -21.89 8.36 -197.52 -1.65 -23.54 16 14 C 0.30 9.38 12.28 180.95 2.22 11.61 16 15 N -0.55 -16.72 10.31 -188.95 -1.95 -18.67 16 16 C 0.18 5.07 6.62 42.07 0.28 5.35 16 17 C -0.19 -6.07 5.75 -19.76 -0.11 -6.19 16 18 C -0.06 -1.78 5.32 29.68 0.16 -1.63 16 19 C -0.12 -2.27 5.98 30.64 0.18 -2.08 16 20 C -0.11 -1.73 5.97 30.63 0.18 -1.54 16 21 C -0.07 -1.26 5.96 29.70 0.18 -1.09 16 22 C 0.04 2.07 6.33 83.57 0.53 2.60 16 23 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 24 H 0.04 2.46 8.11 -2.39 -0.02 2.44 16 25 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 26 H 0.08 3.80 6.64 -2.38 -0.02 3.79 16 27 H 0.22 5.21 8.06 -2.91 -0.02 5.18 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.00 6.30 -2.39 -0.02 1.98 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.27 8.11 -2.38 -0.02 1.25 16 32 H 0.07 1.08 8.10 -2.38 -0.02 1.06 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 2.10 7.85 -2.38 -0.02 2.08 16 37 H 0.07 3.32 7.48 -2.39 -0.02 3.30 16 Total: -1.00 -63.04 299.22 1.19 -61.85 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.06 Total: 14.73 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.62 Total: -4.64 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -7.52 Total: -116.94 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -63.04 1.19 -61.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596433443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.686 kcal (2) G-P(sol) polarization free energy of solvation -63.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds