Wall clock time and date at job start Mon Mar 30 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 110.99555 * 2 1 4 4 H 1.08994 * 109.61563 * 34.77813 * 3 2 1 5 5 C 1.53177 * 109.54398 * 274.55178 * 3 2 1 6 6 C 1.53089 * 109.16177 * 183.15614 * 5 3 2 7 7 O 1.42901 * 109.41731 * 57.60819 * 6 5 3 8 8 C 1.42896 * 114.09996 * 298.84274 * 7 6 5 9 9 C 1.53091 * 109.41660 * 61.15449 * 8 7 6 10 10 H 1.09000 * 109.52566 * 182.41954 * 9 8 7 11 11 O 1.42902 * 109.51822 * 62.29835 * 9 8 7 12 12 C 1.42903 * 114.00103 * 90.00294 * 11 9 8 13 13 C 1.52996 * 109.47290 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.47091 * 64.99730 * 13 12 11 15 15 C 1.42905 * 113.99785 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46972 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 H 1.09001 * 109.47410 * 300.00107 * 1 2 3 25 25 H 1.09000 * 109.46819 * 60.00458 * 1 2 3 26 26 H 1.08997 * 109.46886 * 179.97438 * 1 2 3 27 27 H 1.00903 * 111.00112 * 123.94861 * 2 1 3 28 28 H 1.08994 * 109.51998 * 63.24952 * 5 3 2 29 29 H 1.08997 * 109.52105 * 303.05924 * 5 3 2 30 30 H 1.09005 * 109.48047 * 297.62526 * 6 5 3 31 31 H 1.09001 * 109.49143 * 177.60092 * 6 5 3 32 32 H 1.09001 * 109.47851 * 301.17501 * 8 7 6 33 33 H 1.08996 * 109.49160 * 181.14397 * 8 7 6 34 34 H 1.09002 * 109.46900 * 59.99479 * 12 11 9 35 35 H 1.09004 * 109.46905 * 300.00026 * 12 11 9 36 36 H 1.09003 * 109.47090 * 304.99630 * 13 12 11 37 37 H 1.09002 * 109.47184 * 184.99999 * 13 12 11 38 38 H 1.09001 * 109.47112 * 60.00541 * 15 14 13 39 39 H 1.08993 * 109.47057 * 299.99974 * 15 14 13 40 40 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 1.3392 2.0153 0.5856 5 6 2.0720 1.8910 -1.4390 6 6 2.6946 3.2896 -1.4358 7 8 3.9863 3.2332 -0.8274 8 6 3.9716 2.7994 0.5341 9 6 3.4004 1.3811 0.6102 10 1 3.3483 1.0648 1.6519 11 8 4.2437 0.4870 -0.1188 12 6 5.2843 -0.0998 0.6653 13 6 6.1195 -1.0339 -0.2126 14 8 6.7886 -0.2707 -1.2184 15 6 7.6009 -1.0522 -2.0968 16 6 8.2546 -0.1503 -3.1119 17 1 8.0687 0.9134 -3.0882 18 6 9.0908 -0.6829 -4.0700 19 7 9.3176 -1.9780 -4.0984 20 14 9.9017 0.4352 -5.3277 21 1 10.7458 -0.3769 -6.2407 22 1 10.7482 1.4350 -4.6285 23 1 8.8553 1.1362 -6.1144 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8306 -0.5261 0.7814 28 1 1.0689 1.9397 -1.8625 29 1 2.6884 1.2192 -2.0363 30 1 2.0566 3.9702 -0.8720 31 1 2.7909 3.6471 -2.4610 32 1 3.3504 3.4736 1.1236 33 1 4.9879 2.8036 0.9281 34 1 4.8450 -0.6683 1.4850 35 1 5.9221 0.6865 1.0693 36 1 5.4667 -1.7669 -0.6868 37 1 6.8568 -1.5488 0.4034 38 1 6.9792 -1.7857 -2.6102 39 1 8.3689 -1.5669 -1.5196 40 1 8.8969 -2.5585 -3.4451 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686571557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:26 Heat of formation + Delta-G solvation = -139.214437 kcal Electronic energy + Delta-G solvation = -20359.529198 eV Core-core repulsion = 17174.558816 eV Total energy + Delta-G solvation = -3184.970382 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93410 -37.37213 -36.37267 -35.85652 -32.91580 -31.46785 -30.72912 -28.94359 -26.21654 -26.03515 -23.62539 -22.99929 -22.43596 -21.92608 -20.12078 -16.96353 -16.77717 -16.70653 -16.33056 -15.86618 -15.31276 -15.15389 -14.80721 -14.15573 -14.08266 -13.83570 -13.69501 -13.61564 -12.97594 -12.69145 -12.48876 -12.11189 -11.84520 -11.62307 -11.49641 -11.33667 -10.99435 -10.68005 -10.64274 -10.49440 -10.12435 -10.00879 -9.93101 -9.02460 -8.76092 -8.59987 -8.53098 -8.14494 -6.37439 -4.04649 3.49993 3.53566 3.63539 3.72002 3.84398 4.13252 4.47334 4.53183 4.72424 4.77904 4.85559 5.01339 5.10799 5.14669 5.19629 5.30790 5.37716 5.38666 5.40618 5.44985 5.55835 5.63610 5.69511 5.75042 5.95246 5.96447 5.99809 6.21339 6.41174 6.82644 6.84746 7.16564 7.19921 7.23332 7.48812 8.00310 8.28341 8.75206 8.91319 9.65600 11.02980 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.004663 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.659182 B = 6003.910006 C = 6407.194220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.678 5.678 3 C 0.093 3.907 4 H 0.051 0.949 5 C -0.141 4.141 6 C 0.061 3.939 7 O -0.361 6.361 8 C 0.044 3.956 9 C 0.051 3.949 10 H 0.061 0.939 11 O -0.337 6.337 12 C 0.067 3.933 13 C 0.063 3.937 14 O -0.376 6.376 15 C 0.186 3.814 16 C -0.592 4.592 17 H 0.061 0.939 18 C 0.016 3.984 19 N -0.914 5.914 20 Si 1.079 2.921 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.285 1.285 24 H 0.017 0.983 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.341 0.659 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.049 0.951 38 H -0.005 1.005 39 H -0.007 1.007 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.443 7.034 12.667 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.309 5.309 3 C -0.017 4.017 4 H 0.069 0.931 5 C -0.179 4.179 6 C -0.016 4.016 7 O -0.278 6.278 8 C -0.034 4.034 9 C -0.008 4.008 10 H 0.079 0.921 11 O -0.255 6.255 12 C -0.010 4.010 13 C -0.014 4.014 14 O -0.295 6.295 15 C 0.111 3.889 16 C -0.630 4.630 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.550 5.550 20 Si 0.906 3.094 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.212 1.212 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.160 0.840 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.013 0.987 39 H 0.010 0.990 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.248 7.171 10.358 20.560 hybrid contribution -1.531 -0.227 2.876 3.266 sum -17.779 6.944 13.234 23.226 Atomic orbital electron populations 1.22261 0.87964 1.01882 1.00087 1.60252 1.07092 1.13260 1.50288 1.21663 0.92833 0.89860 0.97345 0.93111 1.22148 1.01597 0.97599 0.96583 1.22600 0.84750 0.95456 0.98820 1.88082 1.28067 1.86774 1.24906 1.23033 1.02398 0.93380 0.84600 1.22889 0.91024 0.91798 0.95113 0.92066 1.88229 1.42328 1.59909 1.35019 1.22608 0.89129 0.96065 0.93211 1.22250 0.94168 0.93516 0.91497 1.87980 1.63518 1.34483 1.43540 1.20276 0.88269 0.92169 0.88160 1.21916 1.30315 0.95929 1.14834 0.92076 1.25923 0.95487 0.98272 0.98992 1.70798 1.43361 1.03710 1.37160 0.83407 0.76162 0.74377 0.75425 1.20718 1.21252 1.21183 0.96432 0.91659 0.91364 0.84035 0.91524 0.88744 0.94015 0.88535 0.92988 0.88424 0.93093 0.93020 0.93606 0.93301 0.98701 0.98961 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.50 60.06 0.63 0.87 16 2 N -0.68 -7.68 6.48 -113.81 -0.74 -8.41 16 3 C 0.09 1.06 2.36 -67.52 -0.16 0.90 16 4 H 0.05 0.49 7.80 -51.93 -0.41 0.09 16 5 C -0.14 -1.80 5.47 -26.59 -0.15 -1.95 16 6 C 0.06 0.76 6.84 37.20 0.25 1.02 16 7 O -0.36 -5.75 10.69 -42.73 -0.46 -6.21 16 8 C 0.04 0.56 6.48 37.20 0.24 0.80 16 9 C 0.05 0.64 2.30 -26.59 -0.06 0.58 16 10 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 11 O -0.34 -5.73 9.18 -51.67 -0.47 -6.20 16 12 C 0.07 1.05 6.13 37.16 0.23 1.28 16 13 C 0.06 1.25 6.32 37.16 0.23 1.48 16 14 O -0.38 -9.84 10.29 -40.08 -0.41 -10.26 16 15 C 0.19 5.37 5.00 36.00 0.18 5.55 16 16 C -0.59 -18.54 9.43 -34.44 -0.32 -18.86 16 17 H 0.06 1.94 7.81 -52.48 -0.41 1.53 16 18 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 19 N -0.91 -28.95 13.65 55.43 0.76 -28.20 16 20 Si 1.08 26.51 29.90 -169.99 -5.08 21.43 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.02 0.13 8.06 -51.93 -0.42 -0.29 16 25 H 0.06 0.57 7.54 -51.93 -0.39 0.18 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.34 3.55 8.45 -39.29 -0.33 3.21 16 28 H 0.07 0.73 7.57 -51.93 -0.39 0.33 16 29 H 0.09 1.58 7.83 -51.93 -0.41 1.17 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 1.26 7.83 -51.93 -0.41 0.85 16 34 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.00 -0.14 8.01 -51.93 -0.42 -0.55 16 39 H -0.01 -0.21 8.01 -51.93 -0.42 -0.62 16 40 H 0.27 8.38 7.22 -40.82 -0.29 8.08 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -35.90 326.53 -7.36 -43.26 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.85 Total: -2.38 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 0.98 Total: -7.95 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.02 Total: -36.61 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -1.34 Total: -22.67 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -5.08 Total: 21.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.90 -7.36 -43.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686571557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.954 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds