Wall clock time and date at job start Mon Mar 30 2020 05:44:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.46906 * 110.99555 * 2 1
4 4 H 1.08994 * 109.61563 * 34.77813 * 3 2 1
5 5 C 1.53177 * 109.54398 * 274.55178 * 3 2 1
6 6 C 1.53089 * 109.16177 * 183.15614 * 5 3 2
7 7 O 1.42901 * 109.41731 * 57.60819 * 6 5 3
8 8 C 1.42896 * 114.09996 * 298.84274 * 7 6 5
9 9 C 1.53091 * 109.41660 * 61.15449 * 8 7 6
10 10 H 1.09000 * 109.52566 * 182.41954 * 9 8 7
11 11 O 1.42902 * 109.51822 * 62.29835 * 9 8 7
12 12 C 1.42903 * 114.00103 * 90.00294 * 11 9 8
13 13 C 1.52996 * 109.47290 * 179.97438 * 12 11 9
14 14 O 1.42901 * 109.47091 * 64.99730 * 13 12 11
15 15 C 1.42905 * 113.99785 * 179.97438 * 14 13 12
16 16 C 1.50698 * 109.46972 * 179.97438 * 15 14 13
17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14
18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14
19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15
20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15
21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16
22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16
23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16
24 24 H 1.09001 * 109.47410 * 300.00107 * 1 2 3
25 25 H 1.09000 * 109.46819 * 60.00458 * 1 2 3
26 26 H 1.08997 * 109.46886 * 179.97438 * 1 2 3
27 27 H 1.00903 * 111.00112 * 123.94861 * 2 1 3
28 28 H 1.08994 * 109.51998 * 63.24952 * 5 3 2
29 29 H 1.08997 * 109.52105 * 303.05924 * 5 3 2
30 30 H 1.09005 * 109.48047 * 297.62526 * 6 5 3
31 31 H 1.09001 * 109.49143 * 177.60092 * 6 5 3
32 32 H 1.09001 * 109.47851 * 301.17501 * 8 7 6
33 33 H 1.08996 * 109.49160 * 181.14397 * 8 7 6
34 34 H 1.09002 * 109.46900 * 59.99479 * 12 11 9
35 35 H 1.09004 * 109.46905 * 300.00026 * 12 11 9
36 36 H 1.09003 * 109.47090 * 304.99630 * 13 12 11
37 37 H 1.09002 * 109.47184 * 184.99999 * 13 12 11
38 38 H 1.09001 * 109.47112 * 60.00541 * 15 14 13
39 39 H 1.08993 * 109.47057 * 299.99974 * 15 14 13
40 40 H 0.97001 * 119.99934 * 359.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 1 1.3392 2.0153 0.5856
5 6 2.0720 1.8910 -1.4390
6 6 2.6946 3.2896 -1.4358
7 8 3.9863 3.2332 -0.8274
8 6 3.9716 2.7994 0.5341
9 6 3.4004 1.3811 0.6102
10 1 3.3483 1.0648 1.6519
11 8 4.2437 0.4870 -0.1188
12 6 5.2843 -0.0998 0.6653
13 6 6.1195 -1.0339 -0.2126
14 8 6.7886 -0.2707 -1.2184
15 6 7.6009 -1.0522 -2.0968
16 6 8.2546 -0.1503 -3.1119
17 1 8.0687 0.9134 -3.0882
18 6 9.0908 -0.6829 -4.0700
19 7 9.3176 -1.9780 -4.0984
20 14 9.9017 0.4352 -5.3277
21 1 10.7458 -0.3769 -6.2407
22 1 10.7482 1.4350 -4.6285
23 1 8.8553 1.1362 -6.1144
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3633 -1.0276 -0.0005
27 1 1.8306 -0.5261 0.7814
28 1 1.0689 1.9397 -1.8625
29 1 2.6884 1.2192 -2.0363
30 1 2.0566 3.9702 -0.8720
31 1 2.7909 3.6471 -2.4610
32 1 3.3504 3.4736 1.1236
33 1 4.9879 2.8036 0.9281
34 1 4.8450 -0.6683 1.4850
35 1 5.9221 0.6865 1.0693
36 1 5.4667 -1.7669 -0.6868
37 1 6.8568 -1.5488 0.4034
38 1 6.9792 -1.7857 -2.6102
39 1 8.3689 -1.5669 -1.5196
40 1 8.8969 -2.5585 -3.4451
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000686571557.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:44:26
Heat of formation + Delta-G solvation = -139.214437 kcal
Electronic energy + Delta-G solvation = -20359.529198 eV
Core-core repulsion = 17174.558816 eV
Total energy + Delta-G solvation = -3184.970382 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.93410 -37.37213 -36.37267 -35.85652 -32.91580 -31.46785 -30.72912 -28.94359
-26.21654 -26.03515 -23.62539 -22.99929 -22.43596 -21.92608 -20.12078 -16.96353
-16.77717 -16.70653 -16.33056 -15.86618 -15.31276 -15.15389 -14.80721 -14.15573
-14.08266 -13.83570 -13.69501 -13.61564 -12.97594 -12.69145 -12.48876 -12.11189
-11.84520 -11.62307 -11.49641 -11.33667 -10.99435 -10.68005 -10.64274 -10.49440
-10.12435 -10.00879 -9.93101 -9.02460 -8.76092 -8.59987 -8.53098 -8.14494
-6.37439 -4.04649 3.49993 3.53566 3.63539 3.72002 3.84398 4.13252
4.47334 4.53183 4.72424 4.77904 4.85559 5.01339 5.10799 5.14669
5.19629 5.30790 5.37716 5.38666 5.40618 5.44985 5.55835 5.63610
5.69511 5.75042 5.95246 5.96447 5.99809 6.21339 6.41174 6.82644
6.84746 7.16564 7.19921 7.23332 7.48812 8.00310 8.28341 8.75206
8.91319 9.65600 11.02980
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.023084 B = 0.004663 C = 0.004369
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1212.659182 B = 6003.910006 C = 6407.194220
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.678 5.678
3 C 0.093 3.907
4 H 0.051 0.949
5 C -0.141 4.141
6 C 0.061 3.939
7 O -0.361 6.361
8 C 0.044 3.956
9 C 0.051 3.949
10 H 0.061 0.939
11 O -0.337 6.337
12 C 0.067 3.933
13 C 0.063 3.937
14 O -0.376 6.376
15 C 0.186 3.814
16 C -0.592 4.592
17 H 0.061 0.939
18 C 0.016 3.984
19 N -0.914 5.914
20 Si 1.079 2.921
21 H -0.282 1.282
22 H -0.286 1.286
23 H -0.285 1.285
24 H 0.017 0.983
25 H 0.065 0.935
26 H 0.068 0.932
27 H 0.341 0.659
28 H 0.066 0.934
29 H 0.094 0.906
30 H 0.042 0.958
31 H 0.097 0.903
32 H 0.052 0.948
33 H 0.098 0.902
34 H 0.051 0.949
35 H 0.052 0.948
36 H 0.046 0.954
37 H 0.049 0.951
38 H -0.005 1.005
39 H -0.007 1.007
40 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.443 7.034 12.667 22.676
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.309 5.309
3 C -0.017 4.017
4 H 0.069 0.931
5 C -0.179 4.179
6 C -0.016 4.016
7 O -0.278 6.278
8 C -0.034 4.034
9 C -0.008 4.008
10 H 0.079 0.921
11 O -0.255 6.255
12 C -0.010 4.010
13 C -0.014 4.014
14 O -0.295 6.295
15 C 0.111 3.889
16 C -0.630 4.630
17 H 0.079 0.921
18 C -0.187 4.187
19 N -0.550 5.550
20 Si 0.906 3.094
21 H -0.207 1.207
22 H -0.213 1.213
23 H -0.212 1.212
24 H 0.036 0.964
25 H 0.083 0.917
26 H 0.086 0.914
27 H 0.160 0.840
28 H 0.085 0.915
29 H 0.113 0.887
30 H 0.060 0.940
31 H 0.115 0.885
32 H 0.070 0.930
33 H 0.116 0.884
34 H 0.069 0.931
35 H 0.070 0.930
36 H 0.064 0.936
37 H 0.067 0.933
38 H 0.013 0.987
39 H 0.010 0.990
40 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -16.248 7.171 10.358 20.560
hybrid contribution -1.531 -0.227 2.876 3.266
sum -17.779 6.944 13.234 23.226
Atomic orbital electron populations
1.22261 0.87964 1.01882 1.00087 1.60252 1.07092 1.13260 1.50288
1.21663 0.92833 0.89860 0.97345 0.93111 1.22148 1.01597 0.97599
0.96583 1.22600 0.84750 0.95456 0.98820 1.88082 1.28067 1.86774
1.24906 1.23033 1.02398 0.93380 0.84600 1.22889 0.91024 0.91798
0.95113 0.92066 1.88229 1.42328 1.59909 1.35019 1.22608 0.89129
0.96065 0.93211 1.22250 0.94168 0.93516 0.91497 1.87980 1.63518
1.34483 1.43540 1.20276 0.88269 0.92169 0.88160 1.21916 1.30315
0.95929 1.14834 0.92076 1.25923 0.95487 0.98272 0.98992 1.70798
1.43361 1.03710 1.37160 0.83407 0.76162 0.74377 0.75425 1.20718
1.21252 1.21183 0.96432 0.91659 0.91364 0.84035 0.91524 0.88744
0.94015 0.88535 0.92988 0.88424 0.93093 0.93020 0.93606 0.93301
0.98701 0.98961 0.92398
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 10.50 60.06 0.63 0.87 16
2 N -0.68 -7.68 6.48 -113.81 -0.74 -8.41 16
3 C 0.09 1.06 2.36 -67.52 -0.16 0.90 16
4 H 0.05 0.49 7.80 -51.93 -0.41 0.09 16
5 C -0.14 -1.80 5.47 -26.59 -0.15 -1.95 16
6 C 0.06 0.76 6.84 37.20 0.25 1.02 16
7 O -0.36 -5.75 10.69 -42.73 -0.46 -6.21 16
8 C 0.04 0.56 6.48 37.20 0.24 0.80 16
9 C 0.05 0.64 2.30 -26.59 -0.06 0.58 16
10 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16
11 O -0.34 -5.73 9.18 -51.67 -0.47 -6.20 16
12 C 0.07 1.05 6.13 37.16 0.23 1.28 16
13 C 0.06 1.25 6.32 37.16 0.23 1.48 16
14 O -0.38 -9.84 10.29 -40.08 -0.41 -10.26 16
15 C 0.19 5.37 5.00 36.00 0.18 5.55 16
16 C -0.59 -18.54 9.43 -34.44 -0.32 -18.86 16
17 H 0.06 1.94 7.81 -52.48 -0.41 1.53 16
18 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16
19 N -0.91 -28.95 13.65 55.43 0.76 -28.20 16
20 Si 1.08 26.51 29.90 -169.99 -5.08 21.43 16
21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16
23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
24 H 0.02 0.13 8.06 -51.93 -0.42 -0.29 16
25 H 0.06 0.57 7.54 -51.93 -0.39 0.18 16
26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
27 H 0.34 3.55 8.45 -39.29 -0.33 3.21 16
28 H 0.07 0.73 7.57 -51.93 -0.39 0.33 16
29 H 0.09 1.58 7.83 -51.93 -0.41 1.17 16
30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16
31 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16
32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.10 1.26 7.83 -51.93 -0.41 0.85 16
34 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16
35 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16
36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
38 H 0.00 -0.14 8.01 -51.93 -0.42 -0.55 16
39 H -0.01 -0.21 8.01 -51.93 -0.42 -0.62 16
40 H 0.27 8.38 7.22 -40.82 -0.29 8.08 16
LS Contribution 326.53 15.07 4.92 4.92
Total: -1.00 -35.90 326.53 -7.36 -43.26
By element:
Atomic # 1 Polarization: 4.47 SS G_CDS: -6.85 Total: -2.38 kcal
Atomic # 6 Polarization: -8.93 SS G_CDS: 0.98 Total: -7.95 kcal
Atomic # 7 Polarization: -36.63 SS G_CDS: 0.02 Total: -36.61 kcal
Atomic # 8 Polarization: -21.33 SS G_CDS: -1.34 Total: -22.67 kcal
Atomic # 14 Polarization: 26.51 SS G_CDS: -5.08 Total: 21.43 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -35.90 -7.36 -43.26 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000686571557.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -95.954 kcal
(2) G-P(sol) polarization free energy of solvation -35.901 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.855 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.214 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds