Wall clock time and date at job start Mon Mar 30 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 110.99555 * 2 1 4 4 H 1.08994 * 109.61563 * 34.77813 * 3 2 1 5 5 C 1.53177 * 109.54398 * 274.55178 * 3 2 1 6 6 C 1.53089 * 109.16177 * 183.15614 * 5 3 2 7 7 O 1.42901 * 109.41731 * 57.60819 * 6 5 3 8 8 C 1.42896 * 114.09996 * 298.84274 * 7 6 5 9 9 C 1.53091 * 109.41660 * 61.15449 * 8 7 6 10 10 H 1.09000 * 109.52566 * 182.41954 * 9 8 7 11 11 O 1.42902 * 109.51822 * 62.29835 * 9 8 7 12 12 C 1.42903 * 114.00103 * 90.00294 * 11 9 8 13 13 C 1.52996 * 109.47290 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.47091 * 64.99730 * 13 12 11 15 15 C 1.42905 * 113.99785 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46972 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 H 1.09001 * 109.47410 * 300.00107 * 1 2 3 25 25 H 1.09000 * 109.46819 * 60.00458 * 1 2 3 26 26 H 1.08997 * 109.46886 * 179.97438 * 1 2 3 27 27 H 1.00903 * 111.00112 * 123.94861 * 2 1 3 28 28 H 1.08994 * 109.51998 * 63.24952 * 5 3 2 29 29 H 1.08997 * 109.52105 * 303.05924 * 5 3 2 30 30 H 1.09005 * 109.48047 * 297.62526 * 6 5 3 31 31 H 1.09001 * 109.49143 * 177.60092 * 6 5 3 32 32 H 1.09001 * 109.47851 * 301.17501 * 8 7 6 33 33 H 1.08996 * 109.49160 * 181.14397 * 8 7 6 34 34 H 1.09002 * 109.46900 * 59.99479 * 12 11 9 35 35 H 1.09004 * 109.46905 * 300.00026 * 12 11 9 36 36 H 1.09003 * 109.47090 * 304.99630 * 13 12 11 37 37 H 1.09002 * 109.47184 * 184.99999 * 13 12 11 38 38 H 1.09001 * 109.47112 * 60.00541 * 15 14 13 39 39 H 1.08993 * 109.47057 * 299.99974 * 15 14 13 40 40 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 1.3392 2.0153 0.5856 5 6 2.0720 1.8910 -1.4390 6 6 2.6946 3.2896 -1.4358 7 8 3.9863 3.2332 -0.8274 8 6 3.9716 2.7994 0.5341 9 6 3.4004 1.3811 0.6102 10 1 3.3483 1.0648 1.6519 11 8 4.2437 0.4870 -0.1188 12 6 5.2843 -0.0998 0.6653 13 6 6.1195 -1.0339 -0.2126 14 8 6.7886 -0.2707 -1.2184 15 6 7.6009 -1.0522 -2.0968 16 6 8.2546 -0.1503 -3.1119 17 1 8.0687 0.9134 -3.0882 18 6 9.0908 -0.6829 -4.0700 19 7 9.3176 -1.9780 -4.0984 20 14 9.9017 0.4352 -5.3277 21 1 10.7458 -0.3769 -6.2407 22 1 10.7482 1.4350 -4.6285 23 1 8.8553 1.1362 -6.1144 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8306 -0.5261 0.7814 28 1 1.0689 1.9397 -1.8625 29 1 2.6884 1.2192 -2.0363 30 1 2.0566 3.9702 -0.8720 31 1 2.7909 3.6471 -2.4610 32 1 3.3504 3.4736 1.1236 33 1 4.9879 2.8036 0.9281 34 1 4.8450 -0.6683 1.4850 35 1 5.9221 0.6865 1.0693 36 1 5.4667 -1.7669 -0.6868 37 1 6.8568 -1.5488 0.4034 38 1 6.9792 -1.7857 -2.6102 39 1 8.3689 -1.5669 -1.5196 40 1 8.8969 -2.5585 -3.4451 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686571557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:25 Heat of formation + Delta-G solvation = -167.473242 kcal Electronic energy + Delta-G solvation = -20360.754591 eV Core-core repulsion = 17174.558816 eV Total energy + Delta-G solvation = -3186.195776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93375 -38.98202 -37.77119 -36.89500 -35.22103 -32.43069 -31.87672 -30.37825 -28.39393 -26.84971 -24.76673 -24.57602 -23.96854 -23.29815 -21.08711 -19.21876 -17.95593 -17.79248 -17.61919 -17.18323 -16.48391 -16.39690 -16.19580 -15.71217 -15.38306 -15.29574 -14.98378 -14.72746 -14.39111 -14.10606 -13.66087 -13.52430 -13.29298 -13.10585 -12.78841 -12.56704 -12.49908 -12.30416 -11.96383 -11.87069 -11.60701 -11.46570 -11.01349 -10.86898 -10.83395 -10.36178 -10.07509 -9.36916 -8.84743 -6.54735 1.51829 1.61501 1.83157 2.49539 2.59460 2.96315 3.02650 3.05247 3.25524 3.58720 3.83606 3.87494 4.08255 4.14191 4.19098 4.28334 4.31139 4.43312 4.44215 4.49784 4.52406 4.55640 4.58244 4.64222 4.69790 4.76076 4.81529 4.89545 5.01420 5.04474 5.35560 5.67268 5.91212 6.02376 6.22133 6.32303 6.41748 6.46911 6.67998 7.25861 8.56605 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.004663 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.659182 B = 6003.910006 C = 6407.194220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.700 5.700 3 C 0.097 3.903 4 H 0.081 0.919 5 C -0.138 4.138 6 C 0.058 3.942 7 O -0.403 6.403 8 C 0.037 3.963 9 C 0.046 3.954 10 H 0.094 0.906 11 O -0.374 6.374 12 C 0.073 3.927 13 C 0.051 3.949 14 O -0.399 6.399 15 C 0.197 3.803 16 C -0.624 4.624 17 H 0.049 0.951 18 C -0.027 4.027 19 N -0.927 5.927 20 Si 1.128 2.872 21 H -0.272 1.272 22 H -0.266 1.266 23 H -0.270 1.270 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.346 0.654 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.068 0.932 38 H -0.022 1.022 39 H -0.013 1.013 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.584 8.196 13.903 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.332 5.332 3 C -0.013 4.013 4 H 0.098 0.902 5 C -0.176 4.176 6 C -0.019 4.019 7 O -0.322 6.322 8 C -0.040 4.040 9 C -0.012 4.012 10 H 0.112 0.888 11 O -0.294 6.294 12 C -0.003 4.003 13 C -0.026 4.026 14 O -0.319 6.319 15 C 0.121 3.879 16 C -0.662 4.662 17 H 0.067 0.933 18 C -0.225 4.225 19 N -0.563 5.563 20 Si 0.947 3.053 21 H -0.197 1.197 22 H -0.190 1.190 23 H -0.195 1.195 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.165 0.835 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.086 0.914 38 H -0.005 1.005 39 H 0.004 0.996 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.423 8.319 11.639 22.544 hybrid contribution -1.271 -0.629 2.567 2.933 sum -18.693 7.690 14.206 24.706 Atomic orbital electron populations 1.22280 0.86487 1.02489 1.00733 1.60205 1.08657 1.13390 1.50981 1.21656 0.92752 0.90525 0.96379 0.90185 1.22075 1.01364 0.96861 0.97314 1.22736 0.84124 0.95835 0.99159 1.88012 1.30229 1.87194 1.26810 1.23218 1.02797 0.94327 0.83658 1.23157 0.90692 0.90865 0.96504 0.88803 1.88186 1.43028 1.61074 1.37065 1.22596 0.88960 0.95921 0.92859 1.22677 0.94706 0.94501 0.90715 1.87926 1.63609 1.35676 1.44673 1.19950 0.88081 0.91540 0.88290 1.22259 1.31668 0.95743 1.16487 0.93306 1.27632 0.95336 0.98882 1.00616 1.70923 1.43804 1.04429 1.37157 0.82832 0.76044 0.73090 0.73373 1.19676 1.19045 1.19534 0.94604 0.92016 0.90888 0.83494 0.89854 0.93770 0.90636 0.88989 0.89388 0.89393 0.88468 0.92918 0.94180 0.91427 1.00488 0.99589 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.50 127.69 1.34 1.78 16 2 N -0.70 -14.58 6.48 -513.98 -3.33 -17.91 16 3 C 0.10 2.00 2.36 45.03 0.11 2.11 16 4 H 0.08 1.22 7.80 -2.39 -0.02 1.20 16 5 C -0.14 -3.45 5.47 30.68 0.17 -3.28 16 6 C 0.06 1.40 6.84 72.01 0.49 1.89 16 7 O -0.40 -12.78 10.69 -141.81 -1.52 -14.30 16 8 C 0.04 0.89 6.48 72.01 0.47 1.35 16 9 C 0.05 1.06 2.30 30.69 0.07 1.14 16 10 H 0.09 1.52 7.79 -2.39 -0.02 1.50 16 11 O -0.37 -12.57 9.18 -133.26 -1.22 -13.79 16 12 C 0.07 2.20 6.13 71.98 0.44 2.64 16 13 C 0.05 2.01 6.32 71.98 0.45 2.47 16 14 O -0.40 -21.54 10.29 -144.34 -1.49 -23.03 16 15 C 0.20 11.78 5.00 71.24 0.36 12.13 16 16 C -0.62 -40.09 9.43 25.60 0.24 -39.85 16 17 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 18 C -0.03 -1.68 5.46 84.65 0.46 -1.22 16 19 N -0.93 -59.40 13.65 21.45 0.29 -59.11 16 20 Si 1.13 52.85 29.90 68.60 2.05 54.90 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H 0.04 0.42 8.06 -2.39 -0.02 0.40 16 25 H 0.06 0.96 7.54 -2.39 -0.02 0.95 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.35 6.43 8.45 -89.69 -0.76 5.67 16 28 H 0.08 1.73 7.57 -2.39 -0.02 1.71 16 29 H 0.04 1.55 7.83 -2.39 -0.02 1.53 16 30 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 2.19 7.83 -2.39 -0.02 2.17 16 34 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 35 H 0.05 1.56 7.83 -2.38 -0.02 1.55 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H -0.02 -1.39 8.01 -2.39 -0.02 -1.41 16 39 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 40 H 0.26 16.50 7.22 -92.71 -0.67 15.83 16 Total: -1.00 -80.17 326.53 -0.26 -80.43 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.35 Total: 11.65 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 4.60 Total: -18.84 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -3.04 Total: -77.02 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -4.23 Total: -51.12 kcal Atomic # 14 Polarization: 52.85 SS G_CDS: 2.05 Total: 54.90 kcal Total: -80.17 -0.26 -80.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686571557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.043 kcal (2) G-P(sol) polarization free energy of solvation -80.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds