Wall clock time and date at job start Mon Mar 30 2020 05:44:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.46906 * 110.99555 * 2 1
4 4 H 1.08994 * 109.61563 * 34.77813 * 3 2 1
5 5 C 1.53177 * 109.54398 * 274.55178 * 3 2 1
6 6 C 1.53089 * 109.16177 * 183.15614 * 5 3 2
7 7 O 1.42901 * 109.41731 * 57.60819 * 6 5 3
8 8 C 1.42896 * 114.09996 * 298.84274 * 7 6 5
9 9 C 1.53091 * 109.41660 * 61.15449 * 8 7 6
10 10 H 1.09000 * 109.52566 * 182.41954 * 9 8 7
11 11 O 1.42902 * 109.51822 * 62.29835 * 9 8 7
12 12 C 1.42903 * 114.00103 * 90.00294 * 11 9 8
13 13 C 1.52996 * 109.47290 * 179.97438 * 12 11 9
14 14 O 1.42901 * 109.47091 * 64.99730 * 13 12 11
15 15 C 1.42905 * 113.99785 * 179.97438 * 14 13 12
16 16 C 1.50698 * 109.46972 * 179.97438 * 15 14 13
17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14
18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14
19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15
20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15
21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16
22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16
23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16
24 24 H 1.09001 * 109.47410 * 300.00107 * 1 2 3
25 25 H 1.09000 * 109.46819 * 60.00458 * 1 2 3
26 26 H 1.08997 * 109.46886 * 179.97438 * 1 2 3
27 27 H 1.00903 * 111.00112 * 123.94861 * 2 1 3
28 28 H 1.08994 * 109.51998 * 63.24952 * 5 3 2
29 29 H 1.08997 * 109.52105 * 303.05924 * 5 3 2
30 30 H 1.09005 * 109.48047 * 297.62526 * 6 5 3
31 31 H 1.09001 * 109.49143 * 177.60092 * 6 5 3
32 32 H 1.09001 * 109.47851 * 301.17501 * 8 7 6
33 33 H 1.08996 * 109.49160 * 181.14397 * 8 7 6
34 34 H 1.09002 * 109.46900 * 59.99479 * 12 11 9
35 35 H 1.09004 * 109.46905 * 300.00026 * 12 11 9
36 36 H 1.09003 * 109.47090 * 304.99630 * 13 12 11
37 37 H 1.09002 * 109.47184 * 184.99999 * 13 12 11
38 38 H 1.09001 * 109.47112 * 60.00541 * 15 14 13
39 39 H 1.08993 * 109.47057 * 299.99974 * 15 14 13
40 40 H 0.97001 * 119.99934 * 359.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 1 1.3392 2.0153 0.5856
5 6 2.0720 1.8910 -1.4390
6 6 2.6946 3.2896 -1.4358
7 8 3.9863 3.2332 -0.8274
8 6 3.9716 2.7994 0.5341
9 6 3.4004 1.3811 0.6102
10 1 3.3483 1.0648 1.6519
11 8 4.2437 0.4870 -0.1188
12 6 5.2843 -0.0998 0.6653
13 6 6.1195 -1.0339 -0.2126
14 8 6.7886 -0.2707 -1.2184
15 6 7.6009 -1.0522 -2.0968
16 6 8.2546 -0.1503 -3.1119
17 1 8.0687 0.9134 -3.0882
18 6 9.0908 -0.6829 -4.0700
19 7 9.3176 -1.9780 -4.0984
20 14 9.9017 0.4352 -5.3277
21 1 10.7458 -0.3769 -6.2407
22 1 10.7482 1.4350 -4.6285
23 1 8.8553 1.1362 -6.1144
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3633 -1.0276 -0.0005
27 1 1.8306 -0.5261 0.7814
28 1 1.0689 1.9397 -1.8625
29 1 2.6884 1.2192 -2.0363
30 1 2.0566 3.9702 -0.8720
31 1 2.7909 3.6471 -2.4610
32 1 3.3504 3.4736 1.1236
33 1 4.9879 2.8036 0.9281
34 1 4.8450 -0.6683 1.4850
35 1 5.9221 0.6865 1.0693
36 1 5.4667 -1.7669 -0.6868
37 1 6.8568 -1.5488 0.4034
38 1 6.9792 -1.7857 -2.6102
39 1 8.3689 -1.5669 -1.5196
40 1 8.8969 -2.5585 -3.4451
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000686571557.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:44:25
Heat of formation + Delta-G solvation = -167.473242 kcal
Electronic energy + Delta-G solvation = -20360.754591 eV
Core-core repulsion = 17174.558816 eV
Total energy + Delta-G solvation = -3186.195776 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.162 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.93375 -38.98202 -37.77119 -36.89500 -35.22103 -32.43069 -31.87672 -30.37825
-28.39393 -26.84971 -24.76673 -24.57602 -23.96854 -23.29815 -21.08711 -19.21876
-17.95593 -17.79248 -17.61919 -17.18323 -16.48391 -16.39690 -16.19580 -15.71217
-15.38306 -15.29574 -14.98378 -14.72746 -14.39111 -14.10606 -13.66087 -13.52430
-13.29298 -13.10585 -12.78841 -12.56704 -12.49908 -12.30416 -11.96383 -11.87069
-11.60701 -11.46570 -11.01349 -10.86898 -10.83395 -10.36178 -10.07509 -9.36916
-8.84743 -6.54735 1.51829 1.61501 1.83157 2.49539 2.59460 2.96315
3.02650 3.05247 3.25524 3.58720 3.83606 3.87494 4.08255 4.14191
4.19098 4.28334 4.31139 4.43312 4.44215 4.49784 4.52406 4.55640
4.58244 4.64222 4.69790 4.76076 4.81529 4.89545 5.01420 5.04474
5.35560 5.67268 5.91212 6.02376 6.22133 6.32303 6.41748 6.46911
6.67998 7.25861 8.56605
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.023084 B = 0.004663 C = 0.004369
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1212.659182 B = 6003.910006 C = 6407.194220
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 N -0.700 5.700
3 C 0.097 3.903
4 H 0.081 0.919
5 C -0.138 4.138
6 C 0.058 3.942
7 O -0.403 6.403
8 C 0.037 3.963
9 C 0.046 3.954
10 H 0.094 0.906
11 O -0.374 6.374
12 C 0.073 3.927
13 C 0.051 3.949
14 O -0.399 6.399
15 C 0.197 3.803
16 C -0.624 4.624
17 H 0.049 0.951
18 C -0.027 4.027
19 N -0.927 5.927
20 Si 1.128 2.872
21 H -0.272 1.272
22 H -0.266 1.266
23 H -0.270 1.270
24 H 0.035 0.965
25 H 0.061 0.939
26 H 0.072 0.928
27 H 0.346 0.654
28 H 0.083 0.917
29 H 0.043 0.957
30 H 0.076 0.924
31 H 0.092 0.908
32 H 0.088 0.912
33 H 0.088 0.912
34 H 0.098 0.902
35 H 0.053 0.947
36 H 0.040 0.960
37 H 0.068 0.932
38 H -0.022 1.022
39 H -0.013 1.013
40 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.584 8.196 13.903 24.614
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.332 5.332
3 C -0.013 4.013
4 H 0.098 0.902
5 C -0.176 4.176
6 C -0.019 4.019
7 O -0.322 6.322
8 C -0.040 4.040
9 C -0.012 4.012
10 H 0.112 0.888
11 O -0.294 6.294
12 C -0.003 4.003
13 C -0.026 4.026
14 O -0.319 6.319
15 C 0.121 3.879
16 C -0.662 4.662
17 H 0.067 0.933
18 C -0.225 4.225
19 N -0.563 5.563
20 Si 0.947 3.053
21 H -0.197 1.197
22 H -0.190 1.190
23 H -0.195 1.195
24 H 0.054 0.946
25 H 0.080 0.920
26 H 0.091 0.909
27 H 0.165 0.835
28 H 0.101 0.899
29 H 0.062 0.938
30 H 0.094 0.906
31 H 0.110 0.890
32 H 0.106 0.894
33 H 0.106 0.894
34 H 0.115 0.885
35 H 0.071 0.929
36 H 0.058 0.942
37 H 0.086 0.914
38 H -0.005 1.005
39 H 0.004 0.996
40 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -17.423 8.319 11.639 22.544
hybrid contribution -1.271 -0.629 2.567 2.933
sum -18.693 7.690 14.206 24.706
Atomic orbital electron populations
1.22280 0.86487 1.02489 1.00733 1.60205 1.08657 1.13390 1.50981
1.21656 0.92752 0.90525 0.96379 0.90185 1.22075 1.01364 0.96861
0.97314 1.22736 0.84124 0.95835 0.99159 1.88012 1.30229 1.87194
1.26810 1.23218 1.02797 0.94327 0.83658 1.23157 0.90692 0.90865
0.96504 0.88803 1.88186 1.43028 1.61074 1.37065 1.22596 0.88960
0.95921 0.92859 1.22677 0.94706 0.94501 0.90715 1.87926 1.63609
1.35676 1.44673 1.19950 0.88081 0.91540 0.88290 1.22259 1.31668
0.95743 1.16487 0.93306 1.27632 0.95336 0.98882 1.00616 1.70923
1.43804 1.04429 1.37157 0.82832 0.76044 0.73090 0.73373 1.19676
1.19045 1.19534 0.94604 0.92016 0.90888 0.83494 0.89854 0.93770
0.90636 0.88989 0.89388 0.89393 0.88468 0.92918 0.94180 0.91427
1.00488 0.99589 0.93578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.44 10.50 127.69 1.34 1.78 16
2 N -0.70 -14.58 6.48 -513.98 -3.33 -17.91 16
3 C 0.10 2.00 2.36 45.03 0.11 2.11 16
4 H 0.08 1.22 7.80 -2.39 -0.02 1.20 16
5 C -0.14 -3.45 5.47 30.68 0.17 -3.28 16
6 C 0.06 1.40 6.84 72.01 0.49 1.89 16
7 O -0.40 -12.78 10.69 -141.81 -1.52 -14.30 16
8 C 0.04 0.89 6.48 72.01 0.47 1.35 16
9 C 0.05 1.06 2.30 30.69 0.07 1.14 16
10 H 0.09 1.52 7.79 -2.39 -0.02 1.50 16
11 O -0.37 -12.57 9.18 -133.26 -1.22 -13.79 16
12 C 0.07 2.20 6.13 71.98 0.44 2.64 16
13 C 0.05 2.01 6.32 71.98 0.45 2.47 16
14 O -0.40 -21.54 10.29 -144.34 -1.49 -23.03 16
15 C 0.20 11.78 5.00 71.24 0.36 12.13 16
16 C -0.62 -40.09 9.43 25.60 0.24 -39.85 16
17 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16
18 C -0.03 -1.68 5.46 84.65 0.46 -1.22 16
19 N -0.93 -59.40 13.65 21.45 0.29 -59.11 16
20 Si 1.13 52.85 29.90 68.60 2.05 54.90 16
21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
24 H 0.04 0.42 8.06 -2.39 -0.02 0.40 16
25 H 0.06 0.96 7.54 -2.39 -0.02 0.95 16
26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
27 H 0.35 6.43 8.45 -89.69 -0.76 5.67 16
28 H 0.08 1.73 7.57 -2.39 -0.02 1.71 16
29 H 0.04 1.55 7.83 -2.39 -0.02 1.53 16
30 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16
31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16
32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16
33 H 0.09 2.19 7.83 -2.39 -0.02 2.17 16
34 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16
35 H 0.05 1.56 7.83 -2.38 -0.02 1.55 16
36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16
37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16
38 H -0.02 -1.39 8.01 -2.39 -0.02 -1.41 16
39 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16
40 H 0.26 16.50 7.22 -92.71 -0.67 15.83 16
Total: -1.00 -80.17 326.53 -0.26 -80.43
By element:
Atomic # 1 Polarization: 11.30 SS G_CDS: 0.35 Total: 11.65 kcal
Atomic # 6 Polarization: -23.44 SS G_CDS: 4.60 Total: -18.84 kcal
Atomic # 7 Polarization: -73.98 SS G_CDS: -3.04 Total: -77.02 kcal
Atomic # 8 Polarization: -46.89 SS G_CDS: -4.23 Total: -51.12 kcal
Atomic # 14 Polarization: 52.85 SS G_CDS: 2.05 Total: 54.90 kcal
Total: -80.17 -0.26 -80.43 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000686571557.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.043 kcal
(2) G-P(sol) polarization free energy of solvation -80.167 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.211 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.430 kcal
(6) G-S(sol) free energy of system = (1) + (5) -167.473 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds