Wall clock time and date at job start Mon Mar 30 2020 05:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81389 * 103.00330 * 2 1 4 4 C 1.52998 * 109.47502 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.54657 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46911 * 59.82213 * 5 4 3 7 7 C 1.46496 * 120.00129 * 269.99834 * 6 5 4 8 8 C 1.36938 * 120.00088 * 90.00147 * 6 5 4 9 9 H 1.08002 * 120.00062 * 338.35349 * 8 6 5 10 10 C 1.38814 * 119.99847 * 158.07394 * 8 6 5 11 11 N 1.31623 * 119.99647 * 155.68971 * 10 8 6 12 12 Si 1.86804 * 120.00156 * 335.69216 * 10 8 6 13 13 H 1.48497 * 109.46854 * 84.87093 * 12 10 8 14 14 H 1.48502 * 109.46711 * 204.87323 * 12 10 8 15 15 H 1.48497 * 109.46888 * 324.87016 * 12 10 8 16 16 C 1.53181 * 109.61419 * 300.22497 * 4 3 2 17 17 C 1.53097 * 109.16036 * 176.88995 * 16 4 3 18 18 O 1.42905 * 109.41348 * 302.38691 * 17 16 4 19 19 C 1.42900 * 114.09477 * 61.16281 * 18 17 16 20 20 C 1.53091 * 109.41697 * 298.83826 * 19 18 17 21 21 H 1.09004 * 109.46630 * 60.00072 * 1 2 3 22 22 H 1.08991 * 109.47516 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47248 * 300.00202 * 1 2 3 24 24 H 1.09004 * 109.47260 * 59.99534 * 3 2 1 25 25 H 1.09006 * 109.47302 * 299.99771 * 3 2 1 26 26 H 1.09000 * 109.46769 * 299.82045 * 5 4 3 27 27 H 1.08993 * 109.47060 * 179.82415 * 5 4 3 28 28 H 1.09003 * 109.47456 * 272.51309 * 7 6 5 29 29 H 1.09000 * 109.47284 * 32.50579 * 7 6 5 30 30 H 1.08998 * 109.47774 * 152.50819 * 7 6 5 31 31 H 0.97005 * 119.99437 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.51836 * 296.79364 * 16 4 3 33 33 H 1.08999 * 109.52406 * 56.98418 * 16 4 3 34 34 H 1.09001 * 109.47405 * 182.40596 * 17 16 4 35 35 H 1.08998 * 109.49199 * 62.38189 * 17 16 4 36 36 H 1.09002 * 109.47816 * 178.85396 * 19 18 17 37 37 H 1.09005 * 109.49149 * 58.82983 * 19 18 17 38 38 H 1.09004 * 109.51793 * 297.70760 * 20 19 18 39 39 H 1.08998 * 109.52057 * 177.51768 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9398 0.0006 5 6 4.0885 3.4302 0.0013 6 7 3.5222 4.0625 1.1953 7 6 2.1710 4.6270 1.1542 8 6 4.2559 4.1259 2.3498 9 1 5.0723 3.4371 2.5093 10 6 3.9540 5.0793 3.3125 11 7 4.2876 4.8742 4.5691 12 14 3.0742 6.6533 2.8246 13 1 1.6087 6.4145 2.8020 14 1 3.3869 7.7205 3.8088 15 1 3.5277 7.0760 1.4753 16 6 4.3346 1.2762 1.2477 17 6 5.8608 1.3868 1.1990 18 8 6.3432 0.7777 -0.0003 19 6 5.8600 1.3870 -1.1992 20 6 4.3338 1.2764 -1.2469 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8032 2.2371 0.8900 25 1 1.8033 2.2371 -0.8900 26 1 3.6732 3.9000 -0.8903 27 1 5.1716 3.5516 0.0049 28 1 2.2186 5.6586 0.8056 29 1 1.5532 4.0416 0.4732 30 1 1.7356 4.6008 2.1532 31 1 4.0770 5.5406 5.2418 32 1 3.9612 1.7789 2.1399 33 1 4.0462 0.2253 1.2729 34 1 6.2897 0.8788 2.0627 35 1 6.1499 2.4377 1.2149 36 1 6.2885 0.8791 -2.0633 37 1 6.1490 2.4379 -1.2151 38 1 4.0454 0.2255 -1.2721 39 1 3.9599 1.7792 -2.1388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687797017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:37 Heat of formation + Delta-G solvation = -23.721033 kcal Electronic energy + Delta-G solvation = -19170.389120 eV Core-core repulsion = 16433.179779 eV Total energy + Delta-G solvation = -2737.209341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.65793 -36.32016 -33.93964 -31.37624 -30.62505 -29.09843 -28.06775 -27.02066 -25.55296 -23.16288 -22.50684 -21.47331 -18.07480 -16.88565 -16.36981 -15.53844 -15.34157 -15.13833 -14.66928 -14.61964 -14.21977 -13.76096 -13.58077 -13.18414 -12.88193 -12.74586 -12.41212 -12.30111 -12.04294 -11.78477 -11.56238 -11.07743 -10.97529 -10.74619 -10.59793 -10.23000 -10.07942 -10.04532 -9.86300 -9.44004 -9.39095 -8.89002 -8.58695 -7.37562 -7.06964 -5.99094 -3.30806 1.93712 2.86480 3.30939 3.47803 3.49469 4.35080 4.51758 4.81964 5.01059 5.18779 5.21658 5.23372 5.25951 5.39218 5.48725 5.65649 5.67769 5.74275 5.78341 5.94537 6.00156 6.04412 6.11987 6.17906 6.22211 6.30463 6.38492 6.44306 6.60697 6.62925 6.73559 6.84583 7.05454 7.69896 7.87835 8.27301 8.89883 9.69705 10.01126 11.15875 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.008671 C = 0.006983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.913487 B = 3228.260112 C = 4008.706818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.267 6.267 3 C -0.061 4.061 4 C -0.060 4.060 5 C 0.158 3.842 6 N -0.606 5.606 7 C 0.099 3.901 8 C -0.267 4.267 9 H 0.097 0.903 10 C 0.026 3.974 11 N -0.901 5.901 12 Si 0.883 3.117 13 H -0.289 1.289 14 H -0.307 1.307 15 H -0.280 1.280 16 C -0.140 4.140 17 C 0.060 3.940 18 O -0.391 6.391 19 C 0.063 3.937 20 C -0.146 4.146 21 H 0.069 0.931 22 H 0.094 0.906 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.007 0.993 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.262 0.738 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 -6.922 -11.084 13.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S -0.040 6.040 3 C -0.209 4.209 4 C -0.064 4.064 5 C 0.030 3.970 6 N -0.329 5.329 7 C -0.046 4.046 8 C -0.395 4.395 9 H 0.115 0.885 10 C -0.174 4.174 11 N -0.544 5.544 12 Si 0.714 3.286 13 H -0.217 1.217 14 H -0.235 1.235 15 H -0.207 1.207 16 C -0.178 4.178 17 C -0.016 4.016 18 O -0.310 6.310 19 C -0.014 4.014 20 C -0.184 4.184 21 H 0.088 0.912 22 H 0.113 0.887 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.024 0.976 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.202 -7.882 -10.894 13.822 hybrid contribution -1.748 2.351 -0.195 2.936 sum -4.950 -5.531 -11.089 13.344 Atomic orbital electron populations 1.23363 0.96116 1.05732 1.04464 1.86772 1.05435 1.13934 1.97905 1.23662 1.00355 0.92093 1.04795 1.21066 0.91073 0.98904 0.95334 1.20955 0.98005 0.89092 0.88963 1.44138 1.11883 1.67413 1.09437 1.21501 0.86871 0.95559 1.00655 1.19024 1.14736 1.13414 0.92306 0.88535 1.25168 0.98675 0.98256 0.95270 1.69886 1.49807 1.34863 0.99814 0.87095 0.78876 0.85430 0.77216 1.21655 1.23496 1.20653 1.22257 0.95383 1.00519 0.99595 1.22705 0.94263 0.98443 0.86210 1.87848 1.70724 1.58365 1.14072 1.22501 0.93408 0.97735 0.87779 1.22301 0.96336 1.01988 0.97816 0.91160 0.88738 0.90764 0.88599 0.91287 0.94320 0.91838 0.97553 0.94839 0.92179 0.92791 0.87659 0.91805 0.89545 0.91897 0.89861 0.93215 0.90418 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 10.76 101.05 1.09 -0.38 16 2 S -0.27 -3.91 19.33 -107.50 -2.08 -5.99 16 3 C -0.06 -0.95 3.70 37.16 0.14 -0.82 16 4 C -0.06 -0.98 0.37 -154.32 -0.06 -1.03 16 5 C 0.16 2.88 4.24 -4.04 -0.02 2.86 16 6 N -0.61 -13.24 2.26 -181.12 -0.41 -13.65 16 7 C 0.10 2.06 7.31 59.84 0.44 2.49 16 8 C -0.27 -6.87 8.33 -15.06 -0.13 -6.99 16 9 H 0.10 2.58 5.27 -52.49 -0.28 2.30 16 10 C 0.03 0.71 5.17 -17.43 -0.09 0.62 16 11 N -0.90 -26.58 13.97 55.49 0.78 -25.81 16 12 Si 0.88 21.95 24.02 -169.99 -4.08 17.87 16 13 H -0.29 -6.92 6.36 56.52 0.36 -6.56 16 14 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 15 H -0.28 -6.98 6.89 56.52 0.39 -6.59 16 16 C -0.14 -2.54 4.20 -26.59 -0.11 -2.65 16 17 C 0.06 1.07 6.00 37.21 0.22 1.29 16 18 O -0.39 -6.72 10.77 -35.23 -0.38 -7.10 16 19 C 0.06 0.90 6.57 37.20 0.24 1.15 16 20 C -0.15 -2.09 4.74 -26.59 -0.13 -2.21 16 21 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 24 H 0.10 1.68 5.96 -51.92 -0.31 1.37 16 25 H 0.07 0.99 8.08 -51.92 -0.42 0.57 16 26 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 27 H 0.06 1.19 4.90 -51.93 -0.25 0.94 16 28 H 0.01 0.14 5.65 -51.93 -0.29 -0.15 16 29 H 0.03 0.58 5.95 -51.93 -0.31 0.28 16 30 H 0.06 1.35 5.84 -51.93 -0.30 1.05 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.11 2.26 5.88 -51.93 -0.31 1.95 16 33 H 0.06 1.16 6.81 -51.93 -0.35 0.81 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.06 1.21 5.33 -51.93 -0.28 0.93 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.71 6.61 -51.93 -0.34 0.36 16 38 H 0.08 1.17 6.81 -51.93 -0.35 0.81 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 290.43 15.07 4.38 4.38 Total: -1.00 -28.56 290.43 -6.14 -34.70 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.94 Total: 1.26 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 1.60 Total: -5.67 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.37 Total: -39.46 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.38 Total: -7.10 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.08 Total: 17.87 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -2.08 Total: -5.99 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.56 -6.14 -34.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687797017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.982 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds