Wall clock time and date at job start Mon Mar 30 2020 05:08:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81400 * 1
3 3 C 1.81389 * 103.00330 * 2 1
4 4 C 1.52998 * 109.47502 * 179.97438 * 3 2 1
5 5 C 1.53003 * 109.54657 * 180.02562 * 4 3 2
6 6 N 1.46496 * 109.46911 * 59.82213 * 5 4 3
7 7 C 1.46496 * 120.00129 * 269.99834 * 6 5 4
8 8 C 1.36938 * 120.00088 * 90.00147 * 6 5 4
9 9 H 1.08002 * 120.00062 * 338.35349 * 8 6 5
10 10 C 1.38814 * 119.99847 * 158.07394 * 8 6 5
11 11 N 1.31623 * 119.99647 * 155.68971 * 10 8 6
12 12 Si 1.86804 * 120.00156 * 335.69216 * 10 8 6
13 13 H 1.48497 * 109.46854 * 84.87093 * 12 10 8
14 14 H 1.48502 * 109.46711 * 204.87323 * 12 10 8
15 15 H 1.48497 * 109.46888 * 324.87016 * 12 10 8
16 16 C 1.53181 * 109.61419 * 300.22497 * 4 3 2
17 17 C 1.53097 * 109.16036 * 176.88995 * 16 4 3
18 18 O 1.42905 * 109.41348 * 302.38691 * 17 16 4
19 19 C 1.42900 * 114.09477 * 61.16281 * 18 17 16
20 20 C 1.53091 * 109.41697 * 298.83826 * 19 18 17
21 21 H 1.09004 * 109.46630 * 60.00072 * 1 2 3
22 22 H 1.08991 * 109.47516 * 179.97438 * 1 2 3
23 23 H 1.09001 * 109.47248 * 300.00202 * 1 2 3
24 24 H 1.09004 * 109.47260 * 59.99534 * 3 2 1
25 25 H 1.09006 * 109.47302 * 299.99771 * 3 2 1
26 26 H 1.09000 * 109.46769 * 299.82045 * 5 4 3
27 27 H 1.08993 * 109.47060 * 179.82415 * 5 4 3
28 28 H 1.09003 * 109.47456 * 272.51309 * 7 6 5
29 29 H 1.09000 * 109.47284 * 32.50579 * 7 6 5
30 30 H 1.08998 * 109.47774 * 152.50819 * 7 6 5
31 31 H 0.97005 * 119.99437 * 179.97438 * 11 10 8
32 32 H 1.09000 * 109.51836 * 296.79364 * 16 4 3
33 33 H 1.08999 * 109.52406 * 56.98418 * 16 4 3
34 34 H 1.09001 * 109.47405 * 182.40596 * 17 16 4
35 35 H 1.08998 * 109.49199 * 62.38189 * 17 16 4
36 36 H 1.09002 * 109.47816 * 178.85396 * 19 18 17
37 37 H 1.09005 * 109.49149 * 58.82983 * 19 18 17
38 38 H 1.09004 * 109.51793 * 297.70760 * 20 19 18
39 39 H 1.08998 * 109.52057 * 177.51768 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7674 0.0000
4 6 3.7424 1.9398 0.0006
5 6 4.0885 3.4302 0.0013
6 7 3.5222 4.0625 1.1953
7 6 2.1710 4.6270 1.1542
8 6 4.2559 4.1259 2.3498
9 1 5.0723 3.4371 2.5093
10 6 3.9540 5.0793 3.3125
11 7 4.2876 4.8742 4.5691
12 14 3.0742 6.6533 2.8246
13 1 1.6087 6.4145 2.8020
14 1 3.3869 7.7205 3.8088
15 1 3.5277 7.0760 1.4753
16 6 4.3346 1.2762 1.2477
17 6 5.8608 1.3868 1.1990
18 8 6.3432 0.7777 -0.0003
19 6 5.8600 1.3870 -1.1992
20 6 4.3338 1.2764 -1.2469
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3634 0.5139 0.8900
24 1 1.8032 2.2371 0.8900
25 1 1.8033 2.2371 -0.8900
26 1 3.6732 3.9000 -0.8903
27 1 5.1716 3.5516 0.0049
28 1 2.2186 5.6586 0.8056
29 1 1.5532 4.0416 0.4732
30 1 1.7356 4.6008 2.1532
31 1 4.0770 5.5406 5.2418
32 1 3.9612 1.7789 2.1399
33 1 4.0462 0.2253 1.2729
34 1 6.2897 0.8788 2.0627
35 1 6.1499 2.4377 1.2149
36 1 6.2885 0.8791 -2.0633
37 1 6.1490 2.4379 -1.2151
38 1 4.0454 0.2255 -1.2721
39 1 3.9599 1.7792 -2.1388
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000687797017.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:37
Heat of formation + Delta-G solvation = -23.721033 kcal
Electronic energy + Delta-G solvation = -19170.389120 eV
Core-core repulsion = 16433.179779 eV
Total energy + Delta-G solvation = -2737.209341 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-39.65793 -36.32016 -33.93964 -31.37624 -30.62505 -29.09843 -28.06775 -27.02066
-25.55296 -23.16288 -22.50684 -21.47331 -18.07480 -16.88565 -16.36981 -15.53844
-15.34157 -15.13833 -14.66928 -14.61964 -14.21977 -13.76096 -13.58077 -13.18414
-12.88193 -12.74586 -12.41212 -12.30111 -12.04294 -11.78477 -11.56238 -11.07743
-10.97529 -10.74619 -10.59793 -10.23000 -10.07942 -10.04532 -9.86300 -9.44004
-9.39095 -8.89002 -8.58695 -7.37562 -7.06964 -5.99094 -3.30806 1.93712
2.86480 3.30939 3.47803 3.49469 4.35080 4.51758 4.81964 5.01059
5.18779 5.21658 5.23372 5.25951 5.39218 5.48725 5.65649 5.67769
5.74275 5.78341 5.94537 6.00156 6.04412 6.11987 6.17906 6.22211
6.30463 6.38492 6.44306 6.60697 6.62925 6.73559 6.84583 7.05454
7.69896 7.87835 8.27301 8.89883 9.69705 10.01126 11.15875
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.018852 B = 0.008671 C = 0.006983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1484.913487 B = 3228.260112 C = 4008.706818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 S -0.267 6.267
3 C -0.061 4.061
4 C -0.060 4.060
5 C 0.158 3.842
6 N -0.606 5.606
7 C 0.099 3.901
8 C -0.267 4.267
9 H 0.097 0.903
10 C 0.026 3.974
11 N -0.901 5.901
12 Si 0.883 3.117
13 H -0.289 1.289
14 H -0.307 1.307
15 H -0.280 1.280
16 C -0.140 4.140
17 C 0.060 3.940
18 O -0.391 6.391
19 C 0.063 3.937
20 C -0.146 4.146
21 H 0.069 0.931
22 H 0.094 0.906
23 H 0.073 0.927
24 H 0.096 0.904
25 H 0.068 0.932
26 H 0.038 0.962
27 H 0.063 0.937
28 H 0.007 0.993
29 H 0.033 0.967
30 H 0.060 0.940
31 H 0.262 0.738
32 H 0.105 0.895
33 H 0.063 0.937
34 H 0.086 0.914
35 H 0.063 0.937
36 H 0.083 0.917
37 H 0.050 0.950
38 H 0.077 0.923
39 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.973 -6.922 -11.084 13.659
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.297 4.297
2 S -0.040 6.040
3 C -0.209 4.209
4 C -0.064 4.064
5 C 0.030 3.970
6 N -0.329 5.329
7 C -0.046 4.046
8 C -0.395 4.395
9 H 0.115 0.885
10 C -0.174 4.174
11 N -0.544 5.544
12 Si 0.714 3.286
13 H -0.217 1.217
14 H -0.235 1.235
15 H -0.207 1.207
16 C -0.178 4.178
17 C -0.016 4.016
18 O -0.310 6.310
19 C -0.014 4.014
20 C -0.184 4.184
21 H 0.088 0.912
22 H 0.113 0.887
23 H 0.092 0.908
24 H 0.114 0.886
25 H 0.087 0.913
26 H 0.057 0.943
27 H 0.082 0.918
28 H 0.024 0.976
29 H 0.052 0.948
30 H 0.078 0.922
31 H 0.072 0.928
32 H 0.123 0.877
33 H 0.082 0.918
34 H 0.105 0.895
35 H 0.081 0.919
36 H 0.101 0.899
37 H 0.068 0.932
38 H 0.096 0.904
39 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -3.202 -7.882 -10.894 13.822
hybrid contribution -1.748 2.351 -0.195 2.936
sum -4.950 -5.531 -11.089 13.344
Atomic orbital electron populations
1.23363 0.96116 1.05732 1.04464 1.86772 1.05435 1.13934 1.97905
1.23662 1.00355 0.92093 1.04795 1.21066 0.91073 0.98904 0.95334
1.20955 0.98005 0.89092 0.88963 1.44138 1.11883 1.67413 1.09437
1.21501 0.86871 0.95559 1.00655 1.19024 1.14736 1.13414 0.92306
0.88535 1.25168 0.98675 0.98256 0.95270 1.69886 1.49807 1.34863
0.99814 0.87095 0.78876 0.85430 0.77216 1.21655 1.23496 1.20653
1.22257 0.95383 1.00519 0.99595 1.22705 0.94263 0.98443 0.86210
1.87848 1.70724 1.58365 1.14072 1.22501 0.93408 0.97735 0.87779
1.22301 0.96336 1.01988 0.97816 0.91160 0.88738 0.90764 0.88599
0.91287 0.94320 0.91838 0.97553 0.94839 0.92179 0.92791 0.87659
0.91805 0.89545 0.91897 0.89861 0.93215 0.90418 0.91631
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.46 10.76 101.05 1.09 -0.38 16
2 S -0.27 -3.91 19.33 -107.50 -2.08 -5.99 16
3 C -0.06 -0.95 3.70 37.16 0.14 -0.82 16
4 C -0.06 -0.98 0.37 -154.32 -0.06 -1.03 16
5 C 0.16 2.88 4.24 -4.04 -0.02 2.86 16
6 N -0.61 -13.24 2.26 -181.12 -0.41 -13.65 16
7 C 0.10 2.06 7.31 59.84 0.44 2.49 16
8 C -0.27 -6.87 8.33 -15.06 -0.13 -6.99 16
9 H 0.10 2.58 5.27 -52.49 -0.28 2.30 16
10 C 0.03 0.71 5.17 -17.43 -0.09 0.62 16
11 N -0.90 -26.58 13.97 55.49 0.78 -25.81 16
12 Si 0.88 21.95 24.02 -169.99 -4.08 17.87 16
13 H -0.29 -6.92 6.36 56.52 0.36 -6.56 16
14 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16
15 H -0.28 -6.98 6.89 56.52 0.39 -6.59 16
16 C -0.14 -2.54 4.20 -26.59 -0.11 -2.65 16
17 C 0.06 1.07 6.00 37.21 0.22 1.29 16
18 O -0.39 -6.72 10.77 -35.23 -0.38 -7.10 16
19 C 0.06 0.90 6.57 37.20 0.24 1.15 16
20 C -0.15 -2.09 4.74 -26.59 -0.13 -2.21 16
21 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16
22 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16
23 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16
24 H 0.10 1.68 5.96 -51.92 -0.31 1.37 16
25 H 0.07 0.99 8.08 -51.92 -0.42 0.57 16
26 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16
27 H 0.06 1.19 4.90 -51.93 -0.25 0.94 16
28 H 0.01 0.14 5.65 -51.93 -0.29 -0.15 16
29 H 0.03 0.58 5.95 -51.93 -0.31 0.28 16
30 H 0.06 1.35 5.84 -51.93 -0.30 1.05 16
31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
32 H 0.11 2.26 5.88 -51.93 -0.31 1.95 16
33 H 0.06 1.16 6.81 -51.93 -0.35 0.81 16
34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16
35 H 0.06 1.21 5.33 -51.93 -0.28 0.93 16
36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16
37 H 0.05 0.71 6.61 -51.93 -0.34 0.36 16
38 H 0.08 1.17 6.81 -51.93 -0.35 0.81 16
39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
LS Contribution 290.43 15.07 4.38 4.38
Total: -1.00 -28.56 290.43 -6.14 -34.70
By element:
Atomic # 1 Polarization: 7.21 SS G_CDS: -5.94 Total: 1.26 kcal
Atomic # 6 Polarization: -7.27 SS G_CDS: 1.60 Total: -5.67 kcal
Atomic # 7 Polarization: -39.82 SS G_CDS: 0.37 Total: -39.46 kcal
Atomic # 8 Polarization: -6.72 SS G_CDS: -0.38 Total: -7.10 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -4.08 Total: 17.87 kcal
Atomic # 16 Polarization: -3.91 SS G_CDS: -2.08 Total: -5.99 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -28.56 -6.14 -34.70 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687797017.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.982 kcal
(2) G-P(sol) polarization free energy of solvation -28.564 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.581 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.703 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds