Wall clock time and date at job start Mon Mar 30 2020 05:08:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81400 * 1
3 3 C 1.81389 * 103.00330 * 2 1
4 4 C 1.52998 * 109.47502 * 179.97438 * 3 2 1
5 5 C 1.53003 * 109.54657 * 180.02562 * 4 3 2
6 6 N 1.46496 * 109.46911 * 59.82213 * 5 4 3
7 7 C 1.46496 * 120.00129 * 269.99834 * 6 5 4
8 8 C 1.36938 * 120.00088 * 90.00147 * 6 5 4
9 9 H 1.08002 * 120.00062 * 338.35349 * 8 6 5
10 10 C 1.38814 * 119.99847 * 158.07394 * 8 6 5
11 11 N 1.31623 * 119.99647 * 155.68971 * 10 8 6
12 12 Si 1.86804 * 120.00156 * 335.69216 * 10 8 6
13 13 H 1.48497 * 109.46854 * 84.87093 * 12 10 8
14 14 H 1.48502 * 109.46711 * 204.87323 * 12 10 8
15 15 H 1.48497 * 109.46888 * 324.87016 * 12 10 8
16 16 C 1.53181 * 109.61419 * 300.22497 * 4 3 2
17 17 C 1.53097 * 109.16036 * 176.88995 * 16 4 3
18 18 O 1.42905 * 109.41348 * 302.38691 * 17 16 4
19 19 C 1.42900 * 114.09477 * 61.16281 * 18 17 16
20 20 C 1.53091 * 109.41697 * 298.83826 * 19 18 17
21 21 H 1.09004 * 109.46630 * 60.00072 * 1 2 3
22 22 H 1.08991 * 109.47516 * 179.97438 * 1 2 3
23 23 H 1.09001 * 109.47248 * 300.00202 * 1 2 3
24 24 H 1.09004 * 109.47260 * 59.99534 * 3 2 1
25 25 H 1.09006 * 109.47302 * 299.99771 * 3 2 1
26 26 H 1.09000 * 109.46769 * 299.82045 * 5 4 3
27 27 H 1.08993 * 109.47060 * 179.82415 * 5 4 3
28 28 H 1.09003 * 109.47456 * 272.51309 * 7 6 5
29 29 H 1.09000 * 109.47284 * 32.50579 * 7 6 5
30 30 H 1.08998 * 109.47774 * 152.50819 * 7 6 5
31 31 H 0.97005 * 119.99437 * 179.97438 * 11 10 8
32 32 H 1.09000 * 109.51836 * 296.79364 * 16 4 3
33 33 H 1.08999 * 109.52406 * 56.98418 * 16 4 3
34 34 H 1.09001 * 109.47405 * 182.40596 * 17 16 4
35 35 H 1.08998 * 109.49199 * 62.38189 * 17 16 4
36 36 H 1.09002 * 109.47816 * 178.85396 * 19 18 17
37 37 H 1.09005 * 109.49149 * 58.82983 * 19 18 17
38 38 H 1.09004 * 109.51793 * 297.70760 * 20 19 18
39 39 H 1.08998 * 109.52057 * 177.51768 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7674 0.0000
4 6 3.7424 1.9398 0.0006
5 6 4.0885 3.4302 0.0013
6 7 3.5222 4.0625 1.1953
7 6 2.1710 4.6270 1.1542
8 6 4.2559 4.1259 2.3498
9 1 5.0723 3.4371 2.5093
10 6 3.9540 5.0793 3.3125
11 7 4.2876 4.8742 4.5691
12 14 3.0742 6.6533 2.8246
13 1 1.6087 6.4145 2.8020
14 1 3.3869 7.7205 3.8088
15 1 3.5277 7.0760 1.4753
16 6 4.3346 1.2762 1.2477
17 6 5.8608 1.3868 1.1990
18 8 6.3432 0.7777 -0.0003
19 6 5.8600 1.3870 -1.1992
20 6 4.3338 1.2764 -1.2469
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3634 0.5139 0.8900
24 1 1.8032 2.2371 0.8900
25 1 1.8033 2.2371 -0.8900
26 1 3.6732 3.9000 -0.8903
27 1 5.1716 3.5516 0.0049
28 1 2.2186 5.6586 0.8056
29 1 1.5532 4.0416 0.4732
30 1 1.7356 4.6008 2.1532
31 1 4.0770 5.5406 5.2418
32 1 3.9612 1.7789 2.1399
33 1 4.0462 0.2253 1.2729
34 1 6.2897 0.8788 2.0627
35 1 6.1499 2.4377 1.2149
36 1 6.2885 0.8791 -2.0633
37 1 6.1490 2.4379 -1.2151
38 1 4.0454 0.2255 -1.2721
39 1 3.9599 1.7792 -2.1388
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000687797017.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:37
Heat of formation + Delta-G solvation = -41.795875 kcal
Electronic energy + Delta-G solvation = -19171.172904 eV
Core-core repulsion = 16433.179779 eV
Total energy + Delta-G solvation = -2737.993125 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.03601 -37.88128 -35.52571 -33.33863 -31.95784 -30.15752 -29.25986 -28.56534
-27.39455 -24.49484 -23.86717 -23.18856 -19.54481 -18.76513 -17.72040 -16.97630
-16.84446 -16.50785 -16.23350 -16.04736 -15.57216 -15.09837 -14.84305 -14.49818
-14.35441 -14.25140 -14.07390 -13.71881 -13.49283 -13.04206 -12.90034 -12.80885
-12.48285 -12.13767 -12.08005 -11.95296 -11.86157 -11.59022 -11.26858 -11.09692
-10.77078 -10.48051 -10.24392 -8.92818 -8.51648 -8.09499 -5.35699 0.84885
1.32670 1.44236 1.50897 1.78067 2.47342 3.06225 3.09445 3.39532
3.73768 3.83497 4.03142 4.23753 4.34631 4.36521 4.38166 4.39989
4.47540 4.52697 4.55306 4.64235 4.73783 4.78111 4.84542 4.89475
4.92509 4.95484 5.00921 5.13706 5.22261 5.33453 5.47588 5.51657
5.91795 6.21134 6.37896 6.96885 7.70924 8.04154 9.09155
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.018852 B = 0.008671 C = 0.006983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1484.913487 B = 3228.260112 C = 4008.706818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 S -0.296 6.296
3 C -0.055 4.055
4 C -0.054 4.054
5 C 0.156 3.844
6 N -0.615 5.615
7 C 0.099 3.901
8 C -0.237 4.237
9 H 0.077 0.923
10 C -0.036 4.036
11 N -0.952 5.952
12 Si 0.937 3.063
13 H -0.275 1.275
14 H -0.321 1.321
15 H -0.276 1.276
16 C -0.129 4.129
17 C 0.067 3.933
18 O -0.401 6.401
19 C 0.054 3.946
20 C -0.136 4.136
21 H 0.087 0.913
22 H 0.111 0.889
23 H 0.072 0.928
24 H 0.072 0.928
25 H 0.090 0.910
26 H 0.066 0.934
27 H 0.055 0.945
28 H 0.008 0.992
29 H 0.071 0.929
30 H 0.038 0.962
31 H 0.257 0.743
32 H 0.065 0.935
33 H 0.062 0.938
34 H 0.082 0.918
35 H 0.045 0.955
36 H 0.112 0.888
37 H 0.052 0.948
38 H 0.075 0.925
39 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.317 -7.346 -14.128 16.788
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.286 4.286
2 S -0.070 6.070
3 C -0.203 4.203
4 C -0.058 4.058
5 C 0.029 3.971
6 N -0.338 5.338
7 C -0.046 4.046
8 C -0.366 4.366
9 H 0.095 0.905
10 C -0.230 4.230
11 N -0.599 5.599
12 Si 0.768 3.232
13 H -0.201 1.201
14 H -0.251 1.251
15 H -0.201 1.201
16 C -0.167 4.167
17 C -0.009 4.009
18 O -0.320 6.320
19 C -0.022 4.022
20 C -0.174 4.174
21 H 0.106 0.894
22 H 0.129 0.871
23 H 0.091 0.909
24 H 0.091 0.909
25 H 0.108 0.892
26 H 0.084 0.916
27 H 0.073 0.927
28 H 0.025 0.975
29 H 0.089 0.911
30 H 0.056 0.944
31 H 0.066 0.934
32 H 0.084 0.916
33 H 0.080 0.920
34 H 0.101 0.899
35 H 0.063 0.937
36 H 0.130 0.870
37 H 0.070 0.930
38 H 0.093 0.907
39 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -4.564 -8.317 -14.002 16.914
hybrid contribution -1.331 2.334 0.663 2.767
sum -5.895 -5.983 -13.340 15.764
Atomic orbital electron populations
1.23427 0.92871 1.07114 1.05226 1.86869 1.09019 1.13157 1.97965
1.23508 0.99421 0.92827 1.04582 1.20927 0.92007 0.97383 0.95442
1.21130 0.97661 0.90035 0.88258 1.44232 1.12362 1.67623 1.09587
1.21518 0.86498 0.96167 1.00411 1.19067 1.13181 1.11338 0.93027
0.90505 1.25697 1.00980 1.01051 0.95297 1.70008 1.53337 1.35698
1.00866 0.86195 0.78792 0.81868 0.76343 1.20119 1.25116 1.20149
1.22064 0.95478 1.00086 0.99106 1.22506 0.94137 0.97321 0.86957
1.87838 1.71017 1.58628 1.14526 1.22783 0.93774 0.98256 0.87367
1.22231 0.95962 1.01825 0.97413 0.89446 0.87083 0.90924 0.90896
0.89182 0.91561 0.92663 0.97462 0.91085 0.94371 0.93405 0.91600
0.91956 0.89929 0.93684 0.87010 0.92983 0.90687 0.88940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.33 10.76 113.37 1.22 -1.11 16
2 S -0.30 -8.00 19.33 -56.49 -1.09 -9.09 16
3 C -0.06 -1.58 3.70 71.98 0.27 -1.31 16
4 C -0.05 -1.66 0.37 -52.06 -0.02 -1.68 16
5 C 0.16 5.33 4.24 86.38 0.37 5.70 16
6 N -0.61 -26.19 2.26 -726.95 -1.64 -27.83 16
7 C 0.10 3.88 7.31 127.77 0.93 4.81 16
8 C -0.24 -12.36 8.33 84.03 0.70 -11.66 16
9 H 0.08 4.27 5.27 -2.91 -0.02 4.25 16
10 C -0.04 -2.02 5.17 84.86 0.44 -1.58 16
11 N -0.95 -58.36 13.97 21.65 0.30 -58.06 16
12 Si 0.94 45.70 24.02 68.60 1.65 47.35 16
13 H -0.27 -12.59 6.36 99.48 0.63 -11.95 16
14 H -0.32 -16.36 7.11 99.48 0.71 -15.65 16
15 H -0.28 -13.05 6.89 99.48 0.69 -12.37 16
16 C -0.13 -4.70 4.20 30.69 0.13 -4.57 16
17 C 0.07 2.43 6.00 72.01 0.43 2.86 16
18 O -0.40 -13.28 10.77 -148.98 -1.60 -14.89 16
19 C 0.05 1.41 6.57 72.01 0.47 1.89 16
20 C -0.14 -3.44 4.74 30.68 0.15 -3.29 16
21 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16
22 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16
23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
24 H 0.07 2.42 5.96 -2.39 -0.01 2.41 16
25 H 0.09 2.18 8.08 -2.39 -0.02 2.17 16
26 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16
27 H 0.06 1.99 4.90 -2.39 -0.01 1.98 16
28 H 0.01 0.30 5.65 -2.39 -0.01 0.29 16
29 H 0.07 2.25 5.95 -2.39 -0.01 2.23 16
30 H 0.04 1.67 5.84 -2.39 -0.01 1.65 16
31 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16
32 H 0.07 2.92 5.88 -2.39 -0.01 2.90 16
33 H 0.06 2.27 6.81 -2.39 -0.02 2.25 16
34 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16
35 H 0.04 1.78 5.33 -2.39 -0.01 1.76 16
36 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16
37 H 0.05 1.34 6.61 -2.38 -0.02 1.33 16
38 H 0.07 2.01 6.81 -2.38 -0.02 1.99 16
39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
Total: -1.00 -62.68 290.43 3.64 -59.05
By element:
Atomic # 1 Polarization: 12.47 SS G_CDS: 0.94 Total: 13.41 kcal
Atomic # 6 Polarization: -15.02 SS G_CDS: 5.08 Total: -9.94 kcal
Atomic # 7 Polarization: -84.55 SS G_CDS: -1.34 Total: -85.89 kcal
Atomic # 8 Polarization: -13.28 SS G_CDS: -1.60 Total: -14.89 kcal
Atomic # 14 Polarization: 45.70 SS G_CDS: 1.65 Total: 47.35 kcal
Atomic # 16 Polarization: -8.00 SS G_CDS: -1.09 Total: -9.09 kcal
Total: -62.68 3.64 -59.05 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687797017.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.251 kcal
(2) G-P(sol) polarization free energy of solvation -62.685 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.433 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.047 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.796 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds