Wall clock time and date at job start Mon Mar 30 2020 05:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81389 * 103.00330 * 2 1 4 4 C 1.52998 * 109.47502 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.54657 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46911 * 59.82213 * 5 4 3 7 7 C 1.46496 * 120.00129 * 269.99834 * 6 5 4 8 8 C 1.36938 * 120.00088 * 90.00147 * 6 5 4 9 9 H 1.08002 * 120.00062 * 338.35349 * 8 6 5 10 10 C 1.38814 * 119.99847 * 158.07394 * 8 6 5 11 11 N 1.31623 * 119.99647 * 155.68971 * 10 8 6 12 12 Si 1.86804 * 120.00156 * 335.69216 * 10 8 6 13 13 H 1.48497 * 109.46854 * 84.87093 * 12 10 8 14 14 H 1.48502 * 109.46711 * 204.87323 * 12 10 8 15 15 H 1.48497 * 109.46888 * 324.87016 * 12 10 8 16 16 C 1.53181 * 109.61419 * 300.22497 * 4 3 2 17 17 C 1.53097 * 109.16036 * 176.88995 * 16 4 3 18 18 O 1.42905 * 109.41348 * 302.38691 * 17 16 4 19 19 C 1.42900 * 114.09477 * 61.16281 * 18 17 16 20 20 C 1.53091 * 109.41697 * 298.83826 * 19 18 17 21 21 H 1.09004 * 109.46630 * 60.00072 * 1 2 3 22 22 H 1.08991 * 109.47516 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47248 * 300.00202 * 1 2 3 24 24 H 1.09004 * 109.47260 * 59.99534 * 3 2 1 25 25 H 1.09006 * 109.47302 * 299.99771 * 3 2 1 26 26 H 1.09000 * 109.46769 * 299.82045 * 5 4 3 27 27 H 1.08993 * 109.47060 * 179.82415 * 5 4 3 28 28 H 1.09003 * 109.47456 * 272.51309 * 7 6 5 29 29 H 1.09000 * 109.47284 * 32.50579 * 7 6 5 30 30 H 1.08998 * 109.47774 * 152.50819 * 7 6 5 31 31 H 0.97005 * 119.99437 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.51836 * 296.79364 * 16 4 3 33 33 H 1.08999 * 109.52406 * 56.98418 * 16 4 3 34 34 H 1.09001 * 109.47405 * 182.40596 * 17 16 4 35 35 H 1.08998 * 109.49199 * 62.38189 * 17 16 4 36 36 H 1.09002 * 109.47816 * 178.85396 * 19 18 17 37 37 H 1.09005 * 109.49149 * 58.82983 * 19 18 17 38 38 H 1.09004 * 109.51793 * 297.70760 * 20 19 18 39 39 H 1.08998 * 109.52057 * 177.51768 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9398 0.0006 5 6 4.0885 3.4302 0.0013 6 7 3.5222 4.0625 1.1953 7 6 2.1710 4.6270 1.1542 8 6 4.2559 4.1259 2.3498 9 1 5.0723 3.4371 2.5093 10 6 3.9540 5.0793 3.3125 11 7 4.2876 4.8742 4.5691 12 14 3.0742 6.6533 2.8246 13 1 1.6087 6.4145 2.8020 14 1 3.3869 7.7205 3.8088 15 1 3.5277 7.0760 1.4753 16 6 4.3346 1.2762 1.2477 17 6 5.8608 1.3868 1.1990 18 8 6.3432 0.7777 -0.0003 19 6 5.8600 1.3870 -1.1992 20 6 4.3338 1.2764 -1.2469 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8032 2.2371 0.8900 25 1 1.8033 2.2371 -0.8900 26 1 3.6732 3.9000 -0.8903 27 1 5.1716 3.5516 0.0049 28 1 2.2186 5.6586 0.8056 29 1 1.5532 4.0416 0.4732 30 1 1.7356 4.6008 2.1532 31 1 4.0770 5.5406 5.2418 32 1 3.9612 1.7789 2.1399 33 1 4.0462 0.2253 1.2729 34 1 6.2897 0.8788 2.0627 35 1 6.1499 2.4377 1.2149 36 1 6.2885 0.8791 -2.0633 37 1 6.1490 2.4379 -1.2151 38 1 4.0454 0.2255 -1.2721 39 1 3.9599 1.7792 -2.1388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687797017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:37 Heat of formation + Delta-G solvation = -41.795875 kcal Electronic energy + Delta-G solvation = -19171.172904 eV Core-core repulsion = 16433.179779 eV Total energy + Delta-G solvation = -2737.993125 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03601 -37.88128 -35.52571 -33.33863 -31.95784 -30.15752 -29.25986 -28.56534 -27.39455 -24.49484 -23.86717 -23.18856 -19.54481 -18.76513 -17.72040 -16.97630 -16.84446 -16.50785 -16.23350 -16.04736 -15.57216 -15.09837 -14.84305 -14.49818 -14.35441 -14.25140 -14.07390 -13.71881 -13.49283 -13.04206 -12.90034 -12.80885 -12.48285 -12.13767 -12.08005 -11.95296 -11.86157 -11.59022 -11.26858 -11.09692 -10.77078 -10.48051 -10.24392 -8.92818 -8.51648 -8.09499 -5.35699 0.84885 1.32670 1.44236 1.50897 1.78067 2.47342 3.06225 3.09445 3.39532 3.73768 3.83497 4.03142 4.23753 4.34631 4.36521 4.38166 4.39989 4.47540 4.52697 4.55306 4.64235 4.73783 4.78111 4.84542 4.89475 4.92509 4.95484 5.00921 5.13706 5.22261 5.33453 5.47588 5.51657 5.91795 6.21134 6.37896 6.96885 7.70924 8.04154 9.09155 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.008671 C = 0.006983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.913487 B = 3228.260112 C = 4008.706818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.296 6.296 3 C -0.055 4.055 4 C -0.054 4.054 5 C 0.156 3.844 6 N -0.615 5.615 7 C 0.099 3.901 8 C -0.237 4.237 9 H 0.077 0.923 10 C -0.036 4.036 11 N -0.952 5.952 12 Si 0.937 3.063 13 H -0.275 1.275 14 H -0.321 1.321 15 H -0.276 1.276 16 C -0.129 4.129 17 C 0.067 3.933 18 O -0.401 6.401 19 C 0.054 3.946 20 C -0.136 4.136 21 H 0.087 0.913 22 H 0.111 0.889 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.008 0.992 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.257 0.743 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.112 0.888 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 -7.346 -14.128 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.070 6.070 3 C -0.203 4.203 4 C -0.058 4.058 5 C 0.029 3.971 6 N -0.338 5.338 7 C -0.046 4.046 8 C -0.366 4.366 9 H 0.095 0.905 10 C -0.230 4.230 11 N -0.599 5.599 12 Si 0.768 3.232 13 H -0.201 1.201 14 H -0.251 1.251 15 H -0.201 1.201 16 C -0.167 4.167 17 C -0.009 4.009 18 O -0.320 6.320 19 C -0.022 4.022 20 C -0.174 4.174 21 H 0.106 0.894 22 H 0.129 0.871 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.025 0.975 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.130 0.870 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.564 -8.317 -14.002 16.914 hybrid contribution -1.331 2.334 0.663 2.767 sum -5.895 -5.983 -13.340 15.764 Atomic orbital electron populations 1.23427 0.92871 1.07114 1.05226 1.86869 1.09019 1.13157 1.97965 1.23508 0.99421 0.92827 1.04582 1.20927 0.92007 0.97383 0.95442 1.21130 0.97661 0.90035 0.88258 1.44232 1.12362 1.67623 1.09587 1.21518 0.86498 0.96167 1.00411 1.19067 1.13181 1.11338 0.93027 0.90505 1.25697 1.00980 1.01051 0.95297 1.70008 1.53337 1.35698 1.00866 0.86195 0.78792 0.81868 0.76343 1.20119 1.25116 1.20149 1.22064 0.95478 1.00086 0.99106 1.22506 0.94137 0.97321 0.86957 1.87838 1.71017 1.58628 1.14526 1.22783 0.93774 0.98256 0.87367 1.22231 0.95962 1.01825 0.97413 0.89446 0.87083 0.90924 0.90896 0.89182 0.91561 0.92663 0.97462 0.91085 0.94371 0.93405 0.91600 0.91956 0.89929 0.93684 0.87010 0.92983 0.90687 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 10.76 113.37 1.22 -1.11 16 2 S -0.30 -8.00 19.33 -56.49 -1.09 -9.09 16 3 C -0.06 -1.58 3.70 71.98 0.27 -1.31 16 4 C -0.05 -1.66 0.37 -52.06 -0.02 -1.68 16 5 C 0.16 5.33 4.24 86.38 0.37 5.70 16 6 N -0.61 -26.19 2.26 -726.95 -1.64 -27.83 16 7 C 0.10 3.88 7.31 127.77 0.93 4.81 16 8 C -0.24 -12.36 8.33 84.03 0.70 -11.66 16 9 H 0.08 4.27 5.27 -2.91 -0.02 4.25 16 10 C -0.04 -2.02 5.17 84.86 0.44 -1.58 16 11 N -0.95 -58.36 13.97 21.65 0.30 -58.06 16 12 Si 0.94 45.70 24.02 68.60 1.65 47.35 16 13 H -0.27 -12.59 6.36 99.48 0.63 -11.95 16 14 H -0.32 -16.36 7.11 99.48 0.71 -15.65 16 15 H -0.28 -13.05 6.89 99.48 0.69 -12.37 16 16 C -0.13 -4.70 4.20 30.69 0.13 -4.57 16 17 C 0.07 2.43 6.00 72.01 0.43 2.86 16 18 O -0.40 -13.28 10.77 -148.98 -1.60 -14.89 16 19 C 0.05 1.41 6.57 72.01 0.47 1.89 16 20 C -0.14 -3.44 4.74 30.68 0.15 -3.29 16 21 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.07 2.42 5.96 -2.39 -0.01 2.41 16 25 H 0.09 2.18 8.08 -2.39 -0.02 2.17 16 26 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 27 H 0.06 1.99 4.90 -2.39 -0.01 1.98 16 28 H 0.01 0.30 5.65 -2.39 -0.01 0.29 16 29 H 0.07 2.25 5.95 -2.39 -0.01 2.23 16 30 H 0.04 1.67 5.84 -2.39 -0.01 1.65 16 31 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 32 H 0.07 2.92 5.88 -2.39 -0.01 2.90 16 33 H 0.06 2.27 6.81 -2.39 -0.02 2.25 16 34 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.04 1.78 5.33 -2.39 -0.01 1.76 16 36 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.05 1.34 6.61 -2.38 -0.02 1.33 16 38 H 0.07 2.01 6.81 -2.38 -0.02 1.99 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -62.68 290.43 3.64 -59.05 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.94 Total: 13.41 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 5.08 Total: -9.94 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -1.34 Total: -85.89 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -1.60 Total: -14.89 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.65 Total: 47.35 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.09 Total: -9.09 kcal Total: -62.68 3.64 -59.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687797017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.251 kcal (2) G-P(sol) polarization free energy of solvation -62.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds