Wall clock time and date at job start Mon Mar 30 2020 04:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.57543 * 2 1 4 4 C 1.53096 * 109.57878 * 239.61024 * 2 1 3 5 5 C 1.52626 * 109.87147 * 177.13218 * 4 2 1 6 6 C 1.52585 * 110.70415 * 70.82054 * 5 4 2 7 7 H 1.08997 * 109.38884 * 49.27347 * 6 5 4 8 8 N 1.46892 * 109.38937 * 169.07629 * 6 5 4 9 9 C 1.46896 * 111.00060 * 205.19340 * 8 6 5 10 10 C 1.53000 * 109.47288 * 179.97438 * 9 8 6 11 11 O 1.42898 * 109.47053 * 65.00104 * 10 9 8 12 12 C 1.42902 * 113.99850 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46730 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.53097 * 109.87348 * 289.17406 * 6 5 4 22 22 S 1.81746 * 108.84161 * 63.07473 * 21 6 5 23 23 H 1.08998 * 109.47213 * 299.74638 * 1 2 3 24 24 H 1.09000 * 109.47060 * 59.75146 * 1 2 3 25 25 H 1.09008 * 109.46889 * 179.74219 * 1 2 3 26 26 H 1.09006 * 109.38954 * 297.31776 * 4 2 1 27 27 H 1.08996 * 109.39034 * 57.11719 * 4 2 1 28 28 H 1.08996 * 109.31810 * 310.45067 * 5 4 2 29 29 H 1.08999 * 109.15352 * 191.07982 * 5 4 2 30 30 H 1.00907 * 111.00470 * 329.14971 * 8 6 5 31 31 H 1.09006 * 109.46893 * 60.00353 * 9 8 6 32 32 H 1.08992 * 109.47516 * 300.00293 * 9 8 6 33 33 H 1.09000 * 109.47216 * 305.00202 * 10 9 8 34 34 H 1.09006 * 109.47062 * 185.00392 * 10 9 8 35 35 H 1.09004 * 109.46962 * 60.00545 * 12 11 10 36 36 H 1.08997 * 109.47823 * 300.00163 * 12 11 10 37 37 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.57797 * 182.88024 * 21 6 5 39 39 H 1.09004 * 109.57426 * 303.14088 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0430 -0.7297 -1.2443 5 6 3.5676 -0.6720 -1.2878 6 6 4.1722 -1.5575 -0.2022 7 1 3.7083 -2.5432 -0.2393 8 7 5.6173 -1.6898 -0.4296 9 6 6.1316 -2.9325 0.1612 10 6 7.6364 -3.0350 -0.0960 11 8 8.3105 -1.9810 0.5943 12 6 9.7288 -1.9858 0.4198 13 6 10.3332 -0.8385 1.1876 14 1 9.6980 -0.1726 1.7527 15 6 11.6974 -0.6390 1.1686 16 7 12.2250 0.3619 1.8391 17 14 12.7962 -1.7903 0.1907 18 1 12.9513 -1.2712 -1.1920 19 1 12.1821 -3.1417 0.1460 20 1 14.1289 -1.8736 0.8405 21 6 3.9292 -0.9328 1.1742 22 16 2.1389 -0.8627 1.4793 23 1 -0.3633 0.5099 0.8922 24 1 -0.3633 0.5177 -0.8877 25 1 -0.3633 -1.0277 -0.0046 26 1 1.7197 -1.7702 -1.2126 27 1 1.6384 -0.2520 -2.1365 28 1 3.8940 0.3567 -1.1351 29 1 3.9107 -1.0156 -2.2637 30 1 5.8347 -1.6403 -1.4137 31 1 5.6271 -3.7861 -0.2916 32 1 5.9457 -2.9284 1.2352 33 1 7.8287 -2.9501 -1.1655 34 1 8.0018 -3.9969 0.2637 35 1 9.9649 -1.8793 -0.6390 36 1 10.1374 -2.9258 0.7904 37 1 13.1846 0.5025 1.8255 38 1 4.4068 -1.5422 1.9414 39 1 4.3451 0.0746 1.1966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689544159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:13 Heat of formation + Delta-G solvation = -61.325551 kcal Electronic energy + Delta-G solvation = -17291.796463 eV Core-core repulsion = 14552.956468 eV Total energy + Delta-G solvation = -2738.839995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.38185 -36.89234 -35.12223 -32.71504 -31.89421 -29.09989 -28.33193 -27.02905 -24.60907 -22.13011 -21.80085 -21.28468 -20.69332 -17.23526 -16.83386 -15.87558 -15.59460 -15.37805 -15.06449 -14.69279 -14.26962 -14.16574 -13.97754 -13.35593 -13.18910 -13.02412 -12.66635 -12.38460 -12.14649 -11.87654 -11.66154 -11.50911 -11.29966 -11.18819 -10.93107 -10.90929 -10.65547 -10.38638 -9.84526 -9.79042 -9.14535 -8.81551 -8.43733 -8.33310 -7.79599 -6.08642 -4.07102 1.63475 2.40777 3.25612 3.32510 3.33896 4.10240 4.34185 4.37408 4.53848 4.57943 4.68555 4.75049 4.95675 5.10471 5.21768 5.22550 5.30198 5.35771 5.41067 5.49109 5.53636 5.60634 5.67774 5.68977 5.79041 5.83824 5.91274 5.93816 6.04267 6.16802 6.62311 7.01673 7.05751 7.43210 7.63149 8.07414 8.71256 9.04553 9.50915 11.04546 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.039638 B = 0.003504 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.222254 B = 7988.897019 C = 8216.782298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 H 0.089 0.911 4 C -0.113 4.113 5 C -0.132 4.132 6 C 0.090 3.910 7 H 0.052 0.948 8 N -0.671 5.671 9 C 0.065 3.935 10 C 0.061 3.939 11 O -0.365 6.365 12 C 0.168 3.832 13 C -0.515 4.515 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.896 5.896 17 Si 0.876 3.124 18 H -0.274 1.274 19 H -0.267 1.267 20 H -0.283 1.283 21 C -0.065 4.065 22 S -0.272 6.272 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.342 0.658 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.042 0.958 35 H -0.004 1.004 36 H 0.000 1.000 37 H 0.266 0.734 38 H 0.106 0.894 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.967 -4.888 -7.775 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.183 4.183 3 H 0.107 0.893 4 C -0.153 4.153 5 C -0.170 4.170 6 C -0.021 4.021 7 H 0.070 0.930 8 N -0.304 5.304 9 C -0.064 4.064 10 C -0.018 4.018 11 O -0.284 6.284 12 C 0.092 3.908 13 C -0.553 4.553 14 H 0.101 0.899 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.703 3.297 18 H -0.200 1.200 19 H -0.192 1.192 20 H -0.208 1.208 21 C -0.214 4.214 22 S -0.046 6.046 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.014 0.986 36 H 0.018 0.982 37 H 0.076 0.924 38 H 0.124 0.876 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.275 -4.655 -6.173 23.578 hybrid contribution 1.349 -0.927 -2.238 2.773 sum -20.926 -5.582 -8.411 23.234 Atomic orbital electron populations 1.21606 0.92030 1.02933 1.02531 1.23197 0.99226 1.01246 0.94595 0.89286 1.21806 0.95285 1.01347 0.96841 1.21728 0.94934 1.01535 0.98779 1.21664 0.88802 0.97840 0.93843 0.93001 1.60275 1.11590 1.38092 1.20437 1.22031 0.94005 0.89419 1.00948 1.22316 0.91753 0.91792 0.95895 1.88020 1.20897 1.48503 1.70940 1.20589 0.77701 0.97206 0.95285 1.20899 0.92465 1.11698 1.30266 0.89910 1.24778 0.97536 0.95341 0.95403 1.69880 1.12102 1.29671 1.41846 0.86851 0.80412 0.81845 0.80607 1.19995 1.19181 1.20826 1.23509 0.91792 1.05745 1.00329 1.86892 1.08308 1.77829 1.31530 0.91748 0.91279 0.91710 0.90741 0.90745 0.90627 0.91053 0.83822 0.94553 0.90223 0.94623 0.93965 0.98600 0.98228 0.92419 0.87612 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.22 37.16 0.34 -0.61 16 2 C -0.05 -0.48 3.11 -26.68 -0.08 -0.56 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.11 -0.91 5.05 -26.87 -0.14 -1.04 16 5 C -0.13 -1.24 5.01 -27.14 -0.14 -1.38 16 6 C 0.09 1.02 2.35 -67.88 -0.16 0.86 16 7 H 0.05 0.58 7.70 -51.93 -0.40 0.18 16 8 N -0.67 -9.18 6.25 -106.91 -0.67 -9.85 16 9 C 0.07 0.91 5.87 -3.83 -0.02 0.89 16 10 C 0.06 1.04 6.22 37.16 0.23 1.27 16 11 O -0.36 -8.57 10.27 -35.23 -0.36 -8.93 16 12 C 0.17 4.32 4.76 36.00 0.17 4.49 16 13 C -0.52 -15.58 9.99 -34.44 -0.34 -15.92 16 14 H 0.08 2.75 8.06 -52.49 -0.42 2.33 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 16 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 17 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.06 -0.82 5.96 37.21 0.22 -0.59 16 22 S -0.27 -3.14 21.70 -107.50 -2.33 -5.47 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 26 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.07 0.60 7.85 -51.93 -0.41 0.20 16 30 H 0.34 4.28 8.17 -39.29 -0.32 3.96 16 31 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16 32 H 0.08 1.18 7.37 -51.93 -0.38 0.80 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.00 -0.09 7.57 -51.93 -0.39 -0.48 16 36 H 0.00 0.00 7.20 -51.93 -0.37 -0.37 16 37 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.11 1.43 7.38 -51.93 -0.38 1.05 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 322.33 15.07 4.86 4.86 Total: -1.00 -32.18 322.33 -9.30 -41.48 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.89 Total: -1.22 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -0.01 Total: -10.58 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.11 Total: -37.08 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.36 Total: -8.93 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.33 Total: -5.47 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.18 -9.30 -41.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689544159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.842 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds