Wall clock time and date at job start Mon Mar 30 2020 04:35:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08997 * 109.57543 * 2 1
4 4 C 1.53096 * 109.57878 * 239.61024 * 2 1 3
5 5 C 1.52626 * 109.87147 * 177.13218 * 4 2 1
6 6 C 1.52585 * 110.70415 * 70.82054 * 5 4 2
7 7 H 1.08997 * 109.38884 * 49.27347 * 6 5 4
8 8 N 1.46892 * 109.38937 * 169.07629 * 6 5 4
9 9 C 1.46896 * 111.00060 * 205.19340 * 8 6 5
10 10 C 1.53000 * 109.47288 * 179.97438 * 9 8 6
11 11 O 1.42898 * 109.47053 * 65.00104 * 10 9 8
12 12 C 1.42902 * 113.99850 * 179.97438 * 11 10 9
13 13 C 1.50699 * 109.46730 * 180.02562 * 12 11 10
14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11
15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11
16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12
17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12
18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13
19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13
20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13
21 21 C 1.53097 * 109.87348 * 289.17406 * 6 5 4
22 22 S 1.81746 * 108.84161 * 63.07473 * 21 6 5
23 23 H 1.08998 * 109.47213 * 299.74638 * 1 2 3
24 24 H 1.09000 * 109.47060 * 59.75146 * 1 2 3
25 25 H 1.09008 * 109.46889 * 179.74219 * 1 2 3
26 26 H 1.09006 * 109.38954 * 297.31776 * 4 2 1
27 27 H 1.08996 * 109.39034 * 57.11719 * 4 2 1
28 28 H 1.08996 * 109.31810 * 310.45067 * 5 4 2
29 29 H 1.08999 * 109.15352 * 191.07982 * 5 4 2
30 30 H 1.00907 * 111.00470 * 329.14971 * 8 6 5
31 31 H 1.09006 * 109.46893 * 60.00353 * 9 8 6
32 32 H 1.08992 * 109.47516 * 300.00293 * 9 8 6
33 33 H 1.09000 * 109.47216 * 305.00202 * 10 9 8
34 34 H 1.09006 * 109.47062 * 185.00392 * 10 9 8
35 35 H 1.09004 * 109.46962 * 60.00545 * 12 11 10
36 36 H 1.08997 * 109.47823 * 300.00163 * 12 11 10
37 37 H 0.96998 * 120.00124 * 180.02562 * 16 15 13
38 38 H 1.08998 * 109.57797 * 182.88024 * 21 6 5
39 39 H 1.09004 * 109.57426 * 303.14088 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8952 1.0270 0.0000
4 6 2.0430 -0.7297 -1.2443
5 6 3.5676 -0.6720 -1.2878
6 6 4.1722 -1.5575 -0.2022
7 1 3.7083 -2.5432 -0.2393
8 7 5.6173 -1.6898 -0.4296
9 6 6.1316 -2.9325 0.1612
10 6 7.6364 -3.0350 -0.0960
11 8 8.3105 -1.9810 0.5943
12 6 9.7288 -1.9858 0.4198
13 6 10.3332 -0.8385 1.1876
14 1 9.6980 -0.1726 1.7527
15 6 11.6974 -0.6390 1.1686
16 7 12.2250 0.3619 1.8391
17 14 12.7962 -1.7903 0.1907
18 1 12.9513 -1.2712 -1.1920
19 1 12.1821 -3.1417 0.1460
20 1 14.1289 -1.8736 0.8405
21 6 3.9292 -0.9328 1.1742
22 16 2.1389 -0.8627 1.4793
23 1 -0.3633 0.5099 0.8922
24 1 -0.3633 0.5177 -0.8877
25 1 -0.3633 -1.0277 -0.0046
26 1 1.7197 -1.7702 -1.2126
27 1 1.6384 -0.2520 -2.1365
28 1 3.8940 0.3567 -1.1351
29 1 3.9107 -1.0156 -2.2637
30 1 5.8347 -1.6403 -1.4137
31 1 5.6271 -3.7861 -0.2916
32 1 5.9457 -2.9284 1.2352
33 1 7.8287 -2.9501 -1.1655
34 1 8.0018 -3.9969 0.2637
35 1 9.9649 -1.8793 -0.6390
36 1 10.1374 -2.9258 0.7904
37 1 13.1846 0.5025 1.8255
38 1 4.4068 -1.5422 1.9414
39 1 4.3451 0.0746 1.1966
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000689544159.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:35:13
Heat of formation + Delta-G solvation = -61.325551 kcal
Electronic energy + Delta-G solvation = -17291.796463 eV
Core-core repulsion = 14552.956468 eV
Total energy + Delta-G solvation = -2738.839995 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-38.38185 -36.89234 -35.12223 -32.71504 -31.89421 -29.09989 -28.33193 -27.02905
-24.60907 -22.13011 -21.80085 -21.28468 -20.69332 -17.23526 -16.83386 -15.87558
-15.59460 -15.37805 -15.06449 -14.69279 -14.26962 -14.16574 -13.97754 -13.35593
-13.18910 -13.02412 -12.66635 -12.38460 -12.14649 -11.87654 -11.66154 -11.50911
-11.29966 -11.18819 -10.93107 -10.90929 -10.65547 -10.38638 -9.84526 -9.79042
-9.14535 -8.81551 -8.43733 -8.33310 -7.79599 -6.08642 -4.07102 1.63475
2.40777 3.25612 3.32510 3.33896 4.10240 4.34185 4.37408 4.53848
4.57943 4.68555 4.75049 4.95675 5.10471 5.21768 5.22550 5.30198
5.35771 5.41067 5.49109 5.53636 5.60634 5.67774 5.68977 5.79041
5.83824 5.91274 5.93816 6.04267 6.16802 6.62311 7.01673 7.05751
7.43210 7.63149 8.07414 8.71256 9.04553 9.50915 11.04546
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.039638 B = 0.003504 C = 0.003407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 706.222254 B = 7988.897019 C = 8216.782298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.054 4.054
3 H 0.089 0.911
4 C -0.113 4.113
5 C -0.132 4.132
6 C 0.090 3.910
7 H 0.052 0.948
8 N -0.671 5.671
9 C 0.065 3.935
10 C 0.061 3.939
11 O -0.365 6.365
12 C 0.168 3.832
13 C -0.515 4.515
14 H 0.083 0.917
15 C 0.071 3.929
16 N -0.896 5.896
17 Si 0.876 3.124
18 H -0.274 1.274
19 H -0.267 1.267
20 H -0.283 1.283
21 C -0.065 4.065
22 S -0.272 6.272
23 H 0.063 0.937
24 H 0.068 0.932
25 H 0.064 0.936
26 H 0.074 0.926
27 H 0.074 0.926
28 H 0.075 0.925
29 H 0.071 0.929
30 H 0.342 0.658
31 H 0.036 0.964
32 H 0.079 0.921
33 H 0.036 0.964
34 H 0.042 0.958
35 H -0.004 1.004
36 H 0.000 1.000
37 H 0.266 0.734
38 H 0.106 0.894
39 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.967 -4.888 -7.775 23.809
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.183 4.183
3 H 0.107 0.893
4 C -0.153 4.153
5 C -0.170 4.170
6 C -0.021 4.021
7 H 0.070 0.930
8 N -0.304 5.304
9 C -0.064 4.064
10 C -0.018 4.018
11 O -0.284 6.284
12 C 0.092 3.908
13 C -0.553 4.553
14 H 0.101 0.899
15 C -0.131 4.131
16 N -0.535 5.535
17 Si 0.703 3.297
18 H -0.200 1.200
19 H -0.192 1.192
20 H -0.208 1.208
21 C -0.214 4.214
22 S -0.046 6.046
23 H 0.083 0.917
24 H 0.087 0.913
25 H 0.083 0.917
26 H 0.093 0.907
27 H 0.093 0.907
28 H 0.094 0.906
29 H 0.089 0.911
30 H 0.162 0.838
31 H 0.054 0.946
32 H 0.098 0.902
33 H 0.054 0.946
34 H 0.060 0.940
35 H 0.014 0.986
36 H 0.018 0.982
37 H 0.076 0.924
38 H 0.124 0.876
39 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -22.275 -4.655 -6.173 23.578
hybrid contribution 1.349 -0.927 -2.238 2.773
sum -20.926 -5.582 -8.411 23.234
Atomic orbital electron populations
1.21606 0.92030 1.02933 1.02531 1.23197 0.99226 1.01246 0.94595
0.89286 1.21806 0.95285 1.01347 0.96841 1.21728 0.94934 1.01535
0.98779 1.21664 0.88802 0.97840 0.93843 0.93001 1.60275 1.11590
1.38092 1.20437 1.22031 0.94005 0.89419 1.00948 1.22316 0.91753
0.91792 0.95895 1.88020 1.20897 1.48503 1.70940 1.20589 0.77701
0.97206 0.95285 1.20899 0.92465 1.11698 1.30266 0.89910 1.24778
0.97536 0.95341 0.95403 1.69880 1.12102 1.29671 1.41846 0.86851
0.80412 0.81845 0.80607 1.19995 1.19181 1.20826 1.23509 0.91792
1.05745 1.00329 1.86892 1.08308 1.77829 1.31530 0.91748 0.91279
0.91710 0.90741 0.90745 0.90627 0.91053 0.83822 0.94553 0.90223
0.94623 0.93965 0.98600 0.98228 0.92419 0.87612 0.88858
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.95 9.22 37.16 0.34 -0.61 16
2 C -0.05 -0.48 3.11 -26.68 -0.08 -0.56 16
3 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16
4 C -0.11 -0.91 5.05 -26.87 -0.14 -1.04 16
5 C -0.13 -1.24 5.01 -27.14 -0.14 -1.38 16
6 C 0.09 1.02 2.35 -67.88 -0.16 0.86 16
7 H 0.05 0.58 7.70 -51.93 -0.40 0.18 16
8 N -0.67 -9.18 6.25 -106.91 -0.67 -9.85 16
9 C 0.07 0.91 5.87 -3.83 -0.02 0.89 16
10 C 0.06 1.04 6.22 37.16 0.23 1.27 16
11 O -0.36 -8.57 10.27 -35.23 -0.36 -8.93 16
12 C 0.17 4.32 4.76 36.00 0.17 4.49 16
13 C -0.52 -15.58 9.99 -34.44 -0.34 -15.92 16
14 H 0.08 2.75 8.06 -52.49 -0.42 2.33 16
15 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16
16 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16
17 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16
18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
19 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16
20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
21 C -0.06 -0.82 5.96 37.21 0.22 -0.59 16
22 S -0.27 -3.14 21.70 -107.50 -2.33 -5.47 16
23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
25 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16
26 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16
27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16
29 H 0.07 0.60 7.85 -51.93 -0.41 0.20 16
30 H 0.34 4.28 8.17 -39.29 -0.32 3.96 16
31 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16
32 H 0.08 1.18 7.37 -51.93 -0.38 0.80 16
33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.00 -0.09 7.57 -51.93 -0.39 -0.48 16
36 H 0.00 0.00 7.20 -51.93 -0.37 -0.37 16
37 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16
38 H 0.11 1.43 7.38 -51.93 -0.38 1.05 16
39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
LS Contribution 322.33 15.07 4.86 4.86
Total: -1.00 -32.18 322.33 -9.30 -41.48
By element:
Atomic # 1 Polarization: 5.67 SS G_CDS: -6.89 Total: -1.22 kcal
Atomic # 6 Polarization: -10.57 SS G_CDS: -0.01 Total: -10.58 kcal
Atomic # 7 Polarization: -37.19 SS G_CDS: 0.11 Total: -37.08 kcal
Atomic # 8 Polarization: -8.57 SS G_CDS: -0.36 Total: -8.93 kcal
Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal
Atomic # 16 Polarization: -3.14 SS G_CDS: -2.33 Total: -5.47 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -32.18 -9.30 -41.48 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689544159.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.842 kcal
(2) G-P(sol) polarization free energy of solvation -32.182 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.326 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds