Wall clock time and date at job start Mon Mar 30 2020 04:35:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08997 * 109.57543 * 2 1
4 4 C 1.53096 * 109.57878 * 239.61024 * 2 1 3
5 5 C 1.52626 * 109.87147 * 177.13218 * 4 2 1
6 6 C 1.52585 * 110.70415 * 70.82054 * 5 4 2
7 7 H 1.08997 * 109.38884 * 49.27347 * 6 5 4
8 8 N 1.46892 * 109.38937 * 169.07629 * 6 5 4
9 9 C 1.46896 * 111.00060 * 205.19340 * 8 6 5
10 10 C 1.53000 * 109.47288 * 179.97438 * 9 8 6
11 11 O 1.42898 * 109.47053 * 65.00104 * 10 9 8
12 12 C 1.42902 * 113.99850 * 179.97438 * 11 10 9
13 13 C 1.50699 * 109.46730 * 180.02562 * 12 11 10
14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11
15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11
16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12
17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12
18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13
19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13
20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13
21 21 C 1.53097 * 109.87348 * 289.17406 * 6 5 4
22 22 S 1.81746 * 108.84161 * 63.07473 * 21 6 5
23 23 H 1.08998 * 109.47213 * 299.74638 * 1 2 3
24 24 H 1.09000 * 109.47060 * 59.75146 * 1 2 3
25 25 H 1.09008 * 109.46889 * 179.74219 * 1 2 3
26 26 H 1.09006 * 109.38954 * 297.31776 * 4 2 1
27 27 H 1.08996 * 109.39034 * 57.11719 * 4 2 1
28 28 H 1.08996 * 109.31810 * 310.45067 * 5 4 2
29 29 H 1.08999 * 109.15352 * 191.07982 * 5 4 2
30 30 H 1.00907 * 111.00470 * 329.14971 * 8 6 5
31 31 H 1.09006 * 109.46893 * 60.00353 * 9 8 6
32 32 H 1.08992 * 109.47516 * 300.00293 * 9 8 6
33 33 H 1.09000 * 109.47216 * 305.00202 * 10 9 8
34 34 H 1.09006 * 109.47062 * 185.00392 * 10 9 8
35 35 H 1.09004 * 109.46962 * 60.00545 * 12 11 10
36 36 H 1.08997 * 109.47823 * 300.00163 * 12 11 10
37 37 H 0.96998 * 120.00124 * 180.02562 * 16 15 13
38 38 H 1.08998 * 109.57797 * 182.88024 * 21 6 5
39 39 H 1.09004 * 109.57426 * 303.14088 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8952 1.0270 0.0000
4 6 2.0430 -0.7297 -1.2443
5 6 3.5676 -0.6720 -1.2878
6 6 4.1722 -1.5575 -0.2022
7 1 3.7083 -2.5432 -0.2393
8 7 5.6173 -1.6898 -0.4296
9 6 6.1316 -2.9325 0.1612
10 6 7.6364 -3.0350 -0.0960
11 8 8.3105 -1.9810 0.5943
12 6 9.7288 -1.9858 0.4198
13 6 10.3332 -0.8385 1.1876
14 1 9.6980 -0.1726 1.7527
15 6 11.6974 -0.6390 1.1686
16 7 12.2250 0.3619 1.8391
17 14 12.7962 -1.7903 0.1907
18 1 12.9513 -1.2712 -1.1920
19 1 12.1821 -3.1417 0.1460
20 1 14.1289 -1.8736 0.8405
21 6 3.9292 -0.9328 1.1742
22 16 2.1389 -0.8627 1.4793
23 1 -0.3633 0.5099 0.8922
24 1 -0.3633 0.5177 -0.8877
25 1 -0.3633 -1.0277 -0.0046
26 1 1.7197 -1.7702 -1.2126
27 1 1.6384 -0.2520 -2.1365
28 1 3.8940 0.3567 -1.1351
29 1 3.9107 -1.0156 -2.2637
30 1 5.8347 -1.6403 -1.4137
31 1 5.6271 -3.7861 -0.2916
32 1 5.9457 -2.9284 1.2352
33 1 7.8287 -2.9501 -1.1655
34 1 8.0018 -3.9969 0.2637
35 1 9.9649 -1.8793 -0.6390
36 1 10.1374 -2.9258 0.7904
37 1 13.1846 0.5025 1.8255
38 1 4.4068 -1.5422 1.9414
39 1 4.3451 0.0746 1.1966
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000689544159.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:35:12
Heat of formation + Delta-G solvation = -83.581824 kcal
Electronic energy + Delta-G solvation = -17292.761567 eV
Core-core repulsion = 14552.956468 eV
Total energy + Delta-G solvation = -2739.805100 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.41465 -38.39579 -36.08469 -34.84467 -33.00342 -30.47332 -29.60701 -28.51725
-25.43509 -23.95552 -23.08370 -22.26698 -21.57010 -19.06083 -18.11296 -17.48713
-16.81178 -16.59675 -16.26154 -15.97775 -15.68543 -15.08319 -14.93547 -14.70340
-14.56026 -14.17307 -14.03048 -13.69850 -13.28305 -13.07142 -12.83894 -12.61554
-12.54719 -12.26953 -12.11464 -12.07267 -11.91807 -11.81323 -11.49830 -11.31024
-10.91736 -10.64196 -10.30338 -9.35494 -8.73384 -8.36783 -6.44624 0.75912
1.32738 1.36530 1.47390 1.52705 2.29682 2.95601 3.09229 3.19516
3.62103 3.72080 3.81545 3.93956 4.19319 4.23417 4.26869 4.32470
4.43697 4.53062 4.56141 4.57845 4.66911 4.70514 4.78354 4.87636
4.93393 4.98113 4.99654 5.03247 5.06033 5.21456 5.29561 5.45238
5.93927 6.06103 6.46634 6.60147 6.81593 7.20180 8.80734
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.039638 B = 0.003504 C = 0.003407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 706.222254 B = 7988.897019 C = 8216.782298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.047 4.047
3 H 0.086 0.914
4 C -0.107 4.107
5 C -0.128 4.128
6 C 0.097 3.903
7 H 0.060 0.940
8 N -0.693 5.693
9 C 0.072 3.928
10 C 0.051 3.949
11 O -0.395 6.395
12 C 0.179 3.821
13 C -0.544 4.544
14 H 0.026 0.974
15 C 0.010 3.990
16 N -0.944 5.944
17 Si 0.959 3.041
18 H -0.259 1.259
19 H -0.245 1.245
20 H -0.274 1.274
21 C -0.062 4.062
22 S -0.299 6.299
23 H 0.058 0.942
24 H 0.092 0.908
25 H 0.065 0.935
26 H 0.078 0.922
27 H 0.099 0.901
28 H 0.062 0.938
29 H 0.087 0.913
30 H 0.350 0.650
31 H 0.072 0.928
32 H 0.064 0.936
33 H 0.053 0.947
34 H 0.057 0.943
35 H 0.010 0.990
36 H 0.010 0.990
37 H 0.273 0.727
38 H 0.087 0.913
39 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.635 -6.797 -10.421 25.829
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.176 4.176
3 H 0.104 0.896
4 C -0.146 4.146
5 C -0.166 4.166
6 C -0.014 4.014
7 H 0.078 0.922
8 N -0.328 5.328
9 C -0.057 4.057
10 C -0.026 4.026
11 O -0.315 6.315
12 C 0.103 3.897
13 C -0.582 4.582
14 H 0.044 0.956
15 C -0.188 4.188
16 N -0.584 5.584
17 Si 0.780 3.220
18 H -0.183 1.183
19 H -0.168 1.168
20 H -0.199 1.199
21 C -0.211 4.211
22 S -0.073 6.073
23 H 0.077 0.923
24 H 0.110 0.890
25 H 0.084 0.916
26 H 0.097 0.903
27 H 0.117 0.883
28 H 0.081 0.919
29 H 0.105 0.895
30 H 0.170 0.830
31 H 0.090 0.910
32 H 0.082 0.918
33 H 0.071 0.929
34 H 0.075 0.925
35 H 0.028 0.972
36 H 0.028 0.972
37 H 0.082 0.918
38 H 0.106 0.894
39 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -22.977 -6.568 -8.821 25.473
hybrid contribution 1.441 -0.239 -1.346 1.987
sum -21.535 -6.807 -10.168 24.768
Atomic orbital electron populations
1.21614 0.90412 1.03321 1.03400 1.23341 1.00353 1.00654 0.93249
0.89595 1.21782 0.93997 1.01712 0.97095 1.21709 0.96003 1.00250
0.98641 1.21638 0.87688 0.98501 0.93569 0.92196 1.60199 1.13205
1.38336 1.21035 1.21956 0.92280 0.90997 1.00469 1.22696 0.92957
0.90609 0.96345 1.87975 1.19792 1.51302 1.72396 1.20285 0.79105
0.95329 0.94949 1.21182 0.92921 1.12949 1.31149 0.95560 1.25897
0.99158 0.97299 0.96409 1.70047 1.13025 1.31887 1.43434 0.85557
0.77696 0.79774 0.78958 1.18313 1.16819 1.19891 1.23389 0.92532
1.04233 1.00980 1.86955 1.07405 1.78479 1.34443 0.92261 0.88958
0.91554 0.90331 0.88298 0.91944 0.89473 0.82988 0.90982 0.91790
0.92928 0.92506 0.97226 0.97248 0.91827 0.89440 0.90972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.58 9.22 71.98 0.66 -0.91 16
2 C -0.05 -0.77 3.11 30.63 0.10 -0.68 16
3 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
4 C -0.11 -1.43 5.05 30.50 0.15 -1.28 16
5 C -0.13 -2.20 5.01 30.33 0.15 -2.05 16
6 C 0.10 2.14 2.35 44.81 0.11 2.24 16
7 H 0.06 1.24 7.70 -2.39 -0.02 1.22 16
8 N -0.69 -18.48 6.25 -492.15 -3.08 -21.56 16
9 C 0.07 1.93 5.87 86.30 0.51 2.43 16
10 C 0.05 1.67 6.22 71.98 0.45 2.12 16
11 O -0.40 -18.65 10.27 -148.98 -1.53 -20.18 16
12 C 0.18 9.13 4.76 71.24 0.34 9.47 16
13 C -0.54 -33.99 9.99 25.60 0.26 -33.74 16
14 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16
15 C 0.01 0.60 5.47 84.65 0.46 1.06 16
16 N -0.94 -60.55 13.96 21.45 0.30 -60.25 16
17 Si 0.96 43.83 27.47 68.60 1.88 45.71 16
18 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16
19 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16
20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
21 C -0.06 -1.63 5.96 72.01 0.43 -1.20 16
22 S -0.30 -6.92 21.70 -56.49 -1.23 -8.14 16
23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
25 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16
26 H 0.08 1.05 8.05 -2.38 -0.02 1.03 16
27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16
28 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16
29 H 0.09 1.24 7.85 -2.39 -0.02 1.22 16
30 H 0.35 8.22 8.17 -89.69 -0.73 7.49 16
31 H 0.07 1.44 8.05 -2.38 -0.02 1.42 16
32 H 0.06 1.91 7.37 -2.39 -0.02 1.89 16
33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
34 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16
35 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16
36 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16
37 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16
38 H 0.09 2.54 7.38 -2.39 -0.02 2.52 16
39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16
Total: -1.00 -72.56 322.33 0.18 -72.38
By element:
Atomic # 1 Polarization: 14.36 SS G_CDS: 0.22 Total: 14.58 kcal
Atomic # 6 Polarization: -26.14 SS G_CDS: 3.61 Total: -22.53 kcal
Atomic # 7 Polarization: -79.04 SS G_CDS: -2.78 Total: -81.81 kcal
Atomic # 8 Polarization: -18.65 SS G_CDS: -1.53 Total: -20.18 kcal
Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal
Atomic # 16 Polarization: -6.92 SS G_CDS: -1.23 Total: -8.14 kcal
Total: -72.56 0.18 -72.38 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689544159.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.198 kcal
(2) G-P(sol) polarization free energy of solvation -72.561 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.760 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.582 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds