Wall clock time and date at job start Mon Mar 30 2020 04:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.57543 * 2 1 4 4 C 1.53096 * 109.57878 * 239.61024 * 2 1 3 5 5 C 1.52626 * 109.87147 * 177.13218 * 4 2 1 6 6 C 1.52585 * 110.70415 * 70.82054 * 5 4 2 7 7 H 1.08997 * 109.38884 * 49.27347 * 6 5 4 8 8 N 1.46892 * 109.38937 * 169.07629 * 6 5 4 9 9 C 1.46896 * 111.00060 * 205.19340 * 8 6 5 10 10 C 1.53000 * 109.47288 * 179.97438 * 9 8 6 11 11 O 1.42898 * 109.47053 * 65.00104 * 10 9 8 12 12 C 1.42902 * 113.99850 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46730 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.53097 * 109.87348 * 289.17406 * 6 5 4 22 22 S 1.81746 * 108.84161 * 63.07473 * 21 6 5 23 23 H 1.08998 * 109.47213 * 299.74638 * 1 2 3 24 24 H 1.09000 * 109.47060 * 59.75146 * 1 2 3 25 25 H 1.09008 * 109.46889 * 179.74219 * 1 2 3 26 26 H 1.09006 * 109.38954 * 297.31776 * 4 2 1 27 27 H 1.08996 * 109.39034 * 57.11719 * 4 2 1 28 28 H 1.08996 * 109.31810 * 310.45067 * 5 4 2 29 29 H 1.08999 * 109.15352 * 191.07982 * 5 4 2 30 30 H 1.00907 * 111.00470 * 329.14971 * 8 6 5 31 31 H 1.09006 * 109.46893 * 60.00353 * 9 8 6 32 32 H 1.08992 * 109.47516 * 300.00293 * 9 8 6 33 33 H 1.09000 * 109.47216 * 305.00202 * 10 9 8 34 34 H 1.09006 * 109.47062 * 185.00392 * 10 9 8 35 35 H 1.09004 * 109.46962 * 60.00545 * 12 11 10 36 36 H 1.08997 * 109.47823 * 300.00163 * 12 11 10 37 37 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.57797 * 182.88024 * 21 6 5 39 39 H 1.09004 * 109.57426 * 303.14088 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0430 -0.7297 -1.2443 5 6 3.5676 -0.6720 -1.2878 6 6 4.1722 -1.5575 -0.2022 7 1 3.7083 -2.5432 -0.2393 8 7 5.6173 -1.6898 -0.4296 9 6 6.1316 -2.9325 0.1612 10 6 7.6364 -3.0350 -0.0960 11 8 8.3105 -1.9810 0.5943 12 6 9.7288 -1.9858 0.4198 13 6 10.3332 -0.8385 1.1876 14 1 9.6980 -0.1726 1.7527 15 6 11.6974 -0.6390 1.1686 16 7 12.2250 0.3619 1.8391 17 14 12.7962 -1.7903 0.1907 18 1 12.9513 -1.2712 -1.1920 19 1 12.1821 -3.1417 0.1460 20 1 14.1289 -1.8736 0.8405 21 6 3.9292 -0.9328 1.1742 22 16 2.1389 -0.8627 1.4793 23 1 -0.3633 0.5099 0.8922 24 1 -0.3633 0.5177 -0.8877 25 1 -0.3633 -1.0277 -0.0046 26 1 1.7197 -1.7702 -1.2126 27 1 1.6384 -0.2520 -2.1365 28 1 3.8940 0.3567 -1.1351 29 1 3.9107 -1.0156 -2.2637 30 1 5.8347 -1.6403 -1.4137 31 1 5.6271 -3.7861 -0.2916 32 1 5.9457 -2.9284 1.2352 33 1 7.8287 -2.9501 -1.1655 34 1 8.0018 -3.9969 0.2637 35 1 9.9649 -1.8793 -0.6390 36 1 10.1374 -2.9258 0.7904 37 1 13.1846 0.5025 1.8255 38 1 4.4068 -1.5422 1.9414 39 1 4.3451 0.0746 1.1966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689544159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:12 Heat of formation + Delta-G solvation = -83.581824 kcal Electronic energy + Delta-G solvation = -17292.761567 eV Core-core repulsion = 14552.956468 eV Total energy + Delta-G solvation = -2739.805100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.41465 -38.39579 -36.08469 -34.84467 -33.00342 -30.47332 -29.60701 -28.51725 -25.43509 -23.95552 -23.08370 -22.26698 -21.57010 -19.06083 -18.11296 -17.48713 -16.81178 -16.59675 -16.26154 -15.97775 -15.68543 -15.08319 -14.93547 -14.70340 -14.56026 -14.17307 -14.03048 -13.69850 -13.28305 -13.07142 -12.83894 -12.61554 -12.54719 -12.26953 -12.11464 -12.07267 -11.91807 -11.81323 -11.49830 -11.31024 -10.91736 -10.64196 -10.30338 -9.35494 -8.73384 -8.36783 -6.44624 0.75912 1.32738 1.36530 1.47390 1.52705 2.29682 2.95601 3.09229 3.19516 3.62103 3.72080 3.81545 3.93956 4.19319 4.23417 4.26869 4.32470 4.43697 4.53062 4.56141 4.57845 4.66911 4.70514 4.78354 4.87636 4.93393 4.98113 4.99654 5.03247 5.06033 5.21456 5.29561 5.45238 5.93927 6.06103 6.46634 6.60147 6.81593 7.20180 8.80734 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.039638 B = 0.003504 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.222254 B = 7988.897019 C = 8216.782298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.047 4.047 3 H 0.086 0.914 4 C -0.107 4.107 5 C -0.128 4.128 6 C 0.097 3.903 7 H 0.060 0.940 8 N -0.693 5.693 9 C 0.072 3.928 10 C 0.051 3.949 11 O -0.395 6.395 12 C 0.179 3.821 13 C -0.544 4.544 14 H 0.026 0.974 15 C 0.010 3.990 16 N -0.944 5.944 17 Si 0.959 3.041 18 H -0.259 1.259 19 H -0.245 1.245 20 H -0.274 1.274 21 C -0.062 4.062 22 S -0.299 6.299 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.350 0.650 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.010 0.990 36 H 0.010 0.990 37 H 0.273 0.727 38 H 0.087 0.913 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.635 -6.797 -10.421 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.176 4.176 3 H 0.104 0.896 4 C -0.146 4.146 5 C -0.166 4.166 6 C -0.014 4.014 7 H 0.078 0.922 8 N -0.328 5.328 9 C -0.057 4.057 10 C -0.026 4.026 11 O -0.315 6.315 12 C 0.103 3.897 13 C -0.582 4.582 14 H 0.044 0.956 15 C -0.188 4.188 16 N -0.584 5.584 17 Si 0.780 3.220 18 H -0.183 1.183 19 H -0.168 1.168 20 H -0.199 1.199 21 C -0.211 4.211 22 S -0.073 6.073 23 H 0.077 0.923 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.170 0.830 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.977 -6.568 -8.821 25.473 hybrid contribution 1.441 -0.239 -1.346 1.987 sum -21.535 -6.807 -10.168 24.768 Atomic orbital electron populations 1.21614 0.90412 1.03321 1.03400 1.23341 1.00353 1.00654 0.93249 0.89595 1.21782 0.93997 1.01712 0.97095 1.21709 0.96003 1.00250 0.98641 1.21638 0.87688 0.98501 0.93569 0.92196 1.60199 1.13205 1.38336 1.21035 1.21956 0.92280 0.90997 1.00469 1.22696 0.92957 0.90609 0.96345 1.87975 1.19792 1.51302 1.72396 1.20285 0.79105 0.95329 0.94949 1.21182 0.92921 1.12949 1.31149 0.95560 1.25897 0.99158 0.97299 0.96409 1.70047 1.13025 1.31887 1.43434 0.85557 0.77696 0.79774 0.78958 1.18313 1.16819 1.19891 1.23389 0.92532 1.04233 1.00980 1.86955 1.07405 1.78479 1.34443 0.92261 0.88958 0.91554 0.90331 0.88298 0.91944 0.89473 0.82988 0.90982 0.91790 0.92928 0.92506 0.97226 0.97248 0.91827 0.89440 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.22 71.98 0.66 -0.91 16 2 C -0.05 -0.77 3.11 30.63 0.10 -0.68 16 3 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.11 -1.43 5.05 30.50 0.15 -1.28 16 5 C -0.13 -2.20 5.01 30.33 0.15 -2.05 16 6 C 0.10 2.14 2.35 44.81 0.11 2.24 16 7 H 0.06 1.24 7.70 -2.39 -0.02 1.22 16 8 N -0.69 -18.48 6.25 -492.15 -3.08 -21.56 16 9 C 0.07 1.93 5.87 86.30 0.51 2.43 16 10 C 0.05 1.67 6.22 71.98 0.45 2.12 16 11 O -0.40 -18.65 10.27 -148.98 -1.53 -20.18 16 12 C 0.18 9.13 4.76 71.24 0.34 9.47 16 13 C -0.54 -33.99 9.99 25.60 0.26 -33.74 16 14 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 15 C 0.01 0.60 5.47 84.65 0.46 1.06 16 16 N -0.94 -60.55 13.96 21.45 0.30 -60.25 16 17 Si 0.96 43.83 27.47 68.60 1.88 45.71 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 19 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 C -0.06 -1.63 5.96 72.01 0.43 -1.20 16 22 S -0.30 -6.92 21.70 -56.49 -1.23 -8.14 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.08 1.05 8.05 -2.38 -0.02 1.03 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16 29 H 0.09 1.24 7.85 -2.39 -0.02 1.22 16 30 H 0.35 8.22 8.17 -89.69 -0.73 7.49 16 31 H 0.07 1.44 8.05 -2.38 -0.02 1.42 16 32 H 0.06 1.91 7.37 -2.39 -0.02 1.89 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 36 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 37 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 38 H 0.09 2.54 7.38 -2.39 -0.02 2.52 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -72.56 322.33 0.18 -72.38 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.22 Total: 14.58 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 3.61 Total: -22.53 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.78 Total: -81.81 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -1.53 Total: -20.18 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Atomic # 16 Polarization: -6.92 SS G_CDS: -1.23 Total: -8.14 kcal Total: -72.56 0.18 -72.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689544159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.198 kcal (2) G-P(sol) polarization free energy of solvation -72.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds