Wall clock time and date at job start Mon Mar 30 2020 04:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47228 * 240.00367 * 2 1 3 5 5 C 1.50692 * 109.46942 * 174.99973 * 4 2 1 6 6 H 1.08004 * 120.00731 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99936 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99585 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00441 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46703 * 59.99906 * 9 7 5 11 11 H 1.48492 * 109.47406 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47025 * 300.00157 * 9 7 5 13 13 N 1.46897 * 109.47571 * 120.00087 * 2 1 3 14 14 C 1.46903 * 111.00031 * 275.00270 * 13 2 1 15 15 C 1.53001 * 109.47457 * 174.60979 * 14 13 2 16 16 S 1.81406 * 112.84987 * 292.62906 * 15 14 13 17 17 C 1.81405 * 102.99512 * 306.90731 * 16 15 14 18 18 O 1.42104 * 109.47047 * 63.29491 * 16 15 14 19 19 C 1.53785 * 113.61338 * 63.81601 * 15 14 13 20 20 C 1.53785 * 87.07643 * 89.11991 * 19 15 14 21 21 C 1.53780 * 87.17265 * 25.39147 * 20 19 15 22 22 H 1.09000 * 109.47148 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47586 * 299.99842 * 1 2 3 24 24 H 1.08999 * 109.47622 * 60.00347 * 1 2 3 25 25 H 1.08994 * 109.46675 * 294.99876 * 4 2 1 26 26 H 1.08996 * 109.46819 * 54.99811 * 4 2 1 27 27 H 0.97003 * 119.99401 * 179.97438 * 8 7 5 28 28 H 1.00898 * 111.00677 * 151.04589 * 13 2 1 29 29 H 1.09004 * 109.46862 * 54.60957 * 14 13 2 30 30 H 1.08995 * 109.47399 * 294.61217 * 14 13 2 31 31 H 1.09000 * 109.46852 * 65.77138 * 17 16 15 32 32 H 1.09006 * 109.46811 * 185.76102 * 17 16 15 33 33 H 1.08997 * 109.47507 * 305.76616 * 17 16 15 34 34 H 1.09004 * 113.61400 * 334.57405 * 19 15 14 35 35 H 1.08991 * 113.69063 * 203.67831 * 19 15 14 36 36 H 1.08997 * 113.61455 * 139.98082 * 20 19 15 37 37 H 1.09005 * 113.61141 * 270.80346 * 20 19 15 38 38 H 1.08994 * 113.61582 * 89.15658 * 21 20 19 39 39 H 1.09002 * 113.61170 * 220.06030 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1934 -2.3578 8 7 3.5764 -1.8385 -3.2991 9 14 6.0920 -1.0610 -2.4369 10 1 6.6845 -1.6861 -1.2272 11 1 6.5872 -1.7620 -3.6487 12 1 6.4844 0.3700 -2.4973 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.4663 -0.5610 3.6037 16 16 1.1788 -1.7264 4.1279 17 6 -0.2997 -0.6806 4.2335 18 8 0.9919 -2.7105 3.1199 19 6 3.8707 -1.1841 3.5362 20 6 4.3975 0.1324 4.1315 21 6 2.9998 0.3268 4.7427 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.7516 -1.7714 -1.2057 26 1 1.6053 -0.2616 -2.1370 27 1 4.0609 -2.2452 -4.0345 28 1 2.9173 -1.1205 1.0287 29 1 1.1083 0.6893 2.4930 30 1 2.8296 0.9931 2.1568 31 1 -0.5641 -0.3237 3.2380 32 1 -1.1267 -1.2609 4.6429 33 1 -0.0968 0.1710 4.8828 34 1 4.2162 -1.3728 2.5198 35 1 4.0005 -2.0434 4.1939 36 1 5.1831 -0.0076 4.8740 37 1 4.6533 0.8797 3.3803 38 1 2.8899 -0.1186 5.7314 39 1 2.6434 1.3559 4.6989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695810293.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:07 Heat of formation + Delta-G solvation = -25.918931 kcal Electronic energy + Delta-G solvation = -18484.175028 eV Core-core repulsion = 15746.870379 eV Total energy + Delta-G solvation = -2737.304649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.10070 -36.12973 -35.12227 -32.68755 -30.59635 -28.82877 -27.36391 -26.31063 -25.50710 -23.43657 -22.47609 -19.38807 -18.86312 -17.09660 -16.34745 -16.18565 -15.31659 -14.89194 -14.52775 -14.30305 -14.06381 -13.63597 -13.38618 -12.79047 -12.64577 -12.40658 -12.27290 -11.94078 -11.77355 -11.64710 -11.44470 -11.20128 -11.08782 -10.96042 -10.70002 -10.53342 -10.32887 -10.21929 -10.16636 -9.35416 -9.20859 -9.04622 -8.36926 -7.95782 -7.51894 -5.99909 -4.03177 1.97078 2.87627 3.31140 3.36102 3.37479 4.04124 4.44300 4.56048 4.61047 4.83155 4.88583 5.21232 5.30646 5.37645 5.39775 5.58571 5.61155 5.70865 5.76661 5.89415 5.97421 5.98896 6.10490 6.19028 6.24356 6.26617 6.35286 6.44487 6.52305 6.96548 6.97760 7.55927 7.66364 7.99635 8.10980 8.32948 8.40176 9.02371 9.60246 11.11154 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.021742 B = 0.006652 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.498706 B = 4208.409212 C = 4867.992436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.090 3.910 3 H 0.026 0.974 4 C 0.021 3.979 5 C -0.523 4.523 6 H 0.049 0.951 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.890 3.110 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.675 5.675 14 C 0.086 3.914 15 C -0.398 4.398 16 S 1.248 4.752 17 C -0.492 4.492 18 O -0.819 6.819 19 C -0.104 4.104 20 C -0.134 4.134 21 C -0.099 4.099 22 H 0.056 0.944 23 H 0.030 0.970 24 H 0.048 0.952 25 H 0.027 0.973 26 H 0.020 0.980 27 H 0.261 0.739 28 H 0.357 0.643 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 4.277 20.735 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.019 4.019 3 H 0.044 0.956 4 C -0.016 4.016 5 C -0.562 4.562 6 H 0.068 0.932 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.045 4.045 15 C -0.496 4.496 16 S 1.445 4.555 17 C -0.649 4.649 18 O -0.814 6.814 19 C -0.143 4.143 20 C -0.173 4.173 21 C -0.139 4.139 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.179 0.821 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.097 2.938 20.860 21.292 hybrid contribution 1.239 1.684 -2.433 3.208 sum -1.858 4.622 18.427 19.089 Atomic orbital electron populations 1.21807 0.97002 1.01414 0.99073 1.21568 0.93160 0.95594 0.91609 0.95603 1.19257 0.95375 0.96333 0.90617 1.21102 0.92200 1.34577 1.08302 0.93250 1.24992 0.98224 0.95164 0.95714 1.69960 1.35578 1.35427 1.11935 0.86691 0.85932 0.78066 0.77505 1.20200 1.21199 1.20414 1.60530 1.35162 1.31272 1.04045 1.21608 0.99427 0.93635 0.89800 1.28706 1.09653 1.09467 1.01736 1.70215 0.87556 0.83256 1.14501 1.27661 1.17437 1.12842 1.06942 1.93212 1.82288 1.43545 1.62322 1.22512 0.92329 0.96853 1.02587 1.22790 0.96321 0.98069 1.00084 1.22606 0.96205 0.99072 0.95978 0.92481 0.95056 0.93294 0.95472 0.96153 0.92890 0.82120 0.91909 0.95518 0.89661 0.88474 0.87963 0.90420 0.89720 0.91388 0.90271 0.88965 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.41 37.15 0.35 -2.37 16 2 C 0.09 2.03 2.59 -67.71 -0.18 1.86 16 3 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 4 C 0.02 0.59 4.57 -27.88 -0.13 0.46 16 5 C -0.52 -15.06 8.12 -34.44 -0.28 -15.34 16 6 H 0.05 1.37 7.49 -52.48 -0.39 0.98 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.68 -14.20 5.75 -106.73 -0.61 -14.81 16 14 C 0.09 1.40 4.64 -3.82 -0.02 1.39 16 15 C -0.40 -5.00 0.97 -89.72 -0.09 -5.08 16 16 S 1.25 14.88 13.20 -107.50 -1.42 13.46 16 17 C -0.49 -5.25 10.01 101.05 1.01 -4.24 16 18 O -0.82 -16.12 17.69 -35.23 -0.62 -16.75 16 19 C -0.10 -1.34 7.13 -25.91 -0.18 -1.52 16 20 C -0.13 -1.41 7.72 -25.92 -0.20 -1.61 16 21 C -0.10 -0.86 7.27 -25.83 -0.19 -1.05 16 22 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.03 0.55 7.38 -51.93 -0.38 0.17 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.36 8.23 5.80 -39.29 -0.23 8.00 16 29 H 0.06 0.98 5.83 -51.93 -0.30 0.68 16 30 H 0.03 0.45 7.32 -51.93 -0.38 0.07 16 31 H 0.08 1.17 7.30 -51.92 -0.38 0.79 16 32 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.26 6.79 -51.93 -0.35 0.91 16 35 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.95 7.62 -51.93 -0.40 0.55 16 38 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 39 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -36.26 321.67 -8.67 -44.93 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.58 Total: 3.86 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 0.00 Total: -25.81 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.12 Total: -41.59 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.62 Total: -16.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 14.88 SS G_CDS: -1.42 Total: 13.46 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.26 -8.67 -44.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810293.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.010 kcal (2) G-P(sol) polarization free energy of solvation -36.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds