Wall clock time and date at job start Mon Mar 30 2020 04:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47228 * 240.00367 * 2 1 3 5 5 C 1.50692 * 109.46942 * 174.99973 * 4 2 1 6 6 H 1.08004 * 120.00731 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99936 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99585 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00441 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46703 * 59.99906 * 9 7 5 11 11 H 1.48492 * 109.47406 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47025 * 300.00157 * 9 7 5 13 13 N 1.46897 * 109.47571 * 120.00087 * 2 1 3 14 14 C 1.46903 * 111.00031 * 275.00270 * 13 2 1 15 15 C 1.53001 * 109.47457 * 174.60979 * 14 13 2 16 16 S 1.81406 * 112.84987 * 292.62906 * 15 14 13 17 17 C 1.81405 * 102.99512 * 306.90731 * 16 15 14 18 18 O 1.42104 * 109.47047 * 63.29491 * 16 15 14 19 19 C 1.53785 * 113.61338 * 63.81601 * 15 14 13 20 20 C 1.53785 * 87.07643 * 89.11991 * 19 15 14 21 21 C 1.53780 * 87.17265 * 25.39147 * 20 19 15 22 22 H 1.09000 * 109.47148 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47586 * 299.99842 * 1 2 3 24 24 H 1.08999 * 109.47622 * 60.00347 * 1 2 3 25 25 H 1.08994 * 109.46675 * 294.99876 * 4 2 1 26 26 H 1.08996 * 109.46819 * 54.99811 * 4 2 1 27 27 H 0.97003 * 119.99401 * 179.97438 * 8 7 5 28 28 H 1.00898 * 111.00677 * 151.04589 * 13 2 1 29 29 H 1.09004 * 109.46862 * 54.60957 * 14 13 2 30 30 H 1.08995 * 109.47399 * 294.61217 * 14 13 2 31 31 H 1.09000 * 109.46852 * 65.77138 * 17 16 15 32 32 H 1.09006 * 109.46811 * 185.76102 * 17 16 15 33 33 H 1.08997 * 109.47507 * 305.76616 * 17 16 15 34 34 H 1.09004 * 113.61400 * 334.57405 * 19 15 14 35 35 H 1.08991 * 113.69063 * 203.67831 * 19 15 14 36 36 H 1.08997 * 113.61455 * 139.98082 * 20 19 15 37 37 H 1.09005 * 113.61141 * 270.80346 * 20 19 15 38 38 H 1.08994 * 113.61582 * 89.15658 * 21 20 19 39 39 H 1.09002 * 113.61170 * 220.06030 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1934 -2.3578 8 7 3.5764 -1.8385 -3.2991 9 14 6.0920 -1.0610 -2.4369 10 1 6.6845 -1.6861 -1.2272 11 1 6.5872 -1.7620 -3.6487 12 1 6.4844 0.3700 -2.4973 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.4663 -0.5610 3.6037 16 16 1.1788 -1.7264 4.1279 17 6 -0.2997 -0.6806 4.2335 18 8 0.9919 -2.7105 3.1199 19 6 3.8707 -1.1841 3.5362 20 6 4.3975 0.1324 4.1315 21 6 2.9998 0.3268 4.7427 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.7516 -1.7714 -1.2057 26 1 1.6053 -0.2616 -2.1370 27 1 4.0609 -2.2452 -4.0345 28 1 2.9173 -1.1205 1.0287 29 1 1.1083 0.6893 2.4930 30 1 2.8296 0.9931 2.1568 31 1 -0.5641 -0.3237 3.2380 32 1 -1.1267 -1.2609 4.6429 33 1 -0.0968 0.1710 4.8828 34 1 4.2162 -1.3728 2.5198 35 1 4.0005 -2.0434 4.1939 36 1 5.1831 -0.0076 4.8740 37 1 4.6533 0.8797 3.3803 38 1 2.8899 -0.1186 5.7314 39 1 2.6434 1.3559 4.6989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810293.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:07 Heat of formation + Delta-G solvation = -53.318017 kcal Electronic energy + Delta-G solvation = -18485.363141 eV Core-core repulsion = 15746.870379 eV Total energy + Delta-G solvation = -2738.492762 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14836 -37.82170 -36.41718 -34.84594 -32.25934 -29.79131 -29.41774 -27.55123 -26.37865 -25.26682 -23.95109 -21.24210 -19.84162 -18.62032 -18.15735 -17.33948 -16.71265 -16.49162 -16.21700 -15.49925 -15.33067 -14.96550 -14.78409 -14.19479 -13.92479 -13.65994 -13.57529 -13.40511 -13.22507 -13.13473 -13.01266 -12.70379 -12.66897 -12.50847 -12.39091 -12.20048 -12.00209 -11.56319 -11.22581 -11.17550 -11.02776 -10.66683 -10.41190 -9.28587 -8.94639 -8.27807 -6.40156 1.01423 1.30970 1.34916 1.42797 1.93609 2.32473 2.98362 3.06915 3.33861 3.66334 3.82210 3.98103 4.03483 4.13869 4.40176 4.41920 4.48407 4.53939 4.56724 4.65129 4.70494 4.82097 4.91286 4.99397 5.04385 5.15338 5.16754 5.23281 5.26060 5.35150 5.35526 5.42226 5.62586 5.72008 6.09580 6.33301 6.52324 6.73642 7.28598 8.84276 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.021742 B = 0.006652 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.498706 B = 4208.409212 C = 4867.992436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.097 3.903 3 H 0.026 0.974 4 C 0.030 3.970 5 C -0.537 4.537 6 H 0.055 0.945 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.266 1.266 13 N -0.685 5.685 14 C 0.082 3.918 15 C -0.406 4.406 16 S 1.300 4.700 17 C -0.487 4.487 18 O -0.906 6.906 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.076 4.076 22 H 0.036 0.964 23 H 0.059 0.941 24 H 0.057 0.943 25 H -0.014 1.014 26 H -0.005 1.005 27 H 0.265 0.735 28 H 0.340 0.660 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.144 0.856 34 H 0.031 0.969 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.141 0.859 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 6.022 24.059 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.013 4.013 3 H 0.044 0.956 4 C -0.007 4.007 5 C -0.575 4.575 6 H 0.073 0.927 7 C -0.196 4.196 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.190 1.190 13 N -0.318 5.318 14 C -0.048 4.048 15 C -0.504 4.504 16 S 1.500 4.500 17 C -0.645 4.645 18 O -0.902 6.902 19 C -0.157 4.157 20 C -0.170 4.170 21 C -0.115 4.115 22 H 0.056 0.944 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.004 0.996 26 H 0.013 0.987 27 H 0.073 0.927 28 H 0.160 0.840 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.163 0.837 34 H 0.050 0.950 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.159 0.841 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.333 4.686 24.204 24.764 hybrid contribution 0.938 1.190 -3.443 3.762 sum -1.394 5.876 20.761 21.622 Atomic orbital electron populations 1.21706 0.95034 1.00698 1.00926 1.21382 0.94720 0.94713 0.90455 0.95565 1.19092 0.95292 0.94123 0.92238 1.21412 0.92942 1.34649 1.08526 0.92672 1.25996 1.04008 0.94507 0.95135 1.70111 1.37918 1.36371 1.12697 0.85485 0.78922 0.78706 0.77850 1.19188 1.20584 1.19034 1.60575 1.34145 1.32485 1.04626 1.21768 1.00007 0.93287 0.89692 1.28760 1.09632 1.10165 1.01840 1.69079 0.87311 0.81751 1.11878 1.27615 1.16595 1.14012 1.06326 1.93083 1.84171 1.48427 1.64510 1.22658 0.92921 0.99290 1.00805 1.22765 0.98537 0.95643 1.00088 1.22731 0.93311 0.99216 0.96197 0.94439 0.92171 0.92406 0.99590 0.98654 0.92670 0.83996 0.90761 0.96029 0.92524 0.86941 0.83741 0.95010 0.87311 0.88743 0.92480 0.84140 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.41 71.98 0.68 -4.47 16 2 C 0.10 4.54 2.59 44.92 0.12 4.65 16 3 H 0.03 1.22 7.86 -2.39 -0.02 1.20 16 4 C 0.03 1.73 4.57 29.85 0.14 1.87 16 5 C -0.54 -32.08 8.12 25.60 0.21 -31.87 16 6 H 0.06 3.15 7.49 -2.91 -0.02 3.13 16 7 C 0.00 0.11 5.46 84.65 0.46 0.57 16 8 N -0.93 -59.60 13.29 21.45 0.28 -59.31 16 9 Si 0.97 46.07 29.54 68.60 2.03 48.10 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 N -0.69 -29.81 5.75 -491.57 -2.82 -32.64 16 14 C 0.08 2.63 4.64 86.30 0.40 3.03 16 15 C -0.41 -9.41 0.97 -10.21 -0.01 -9.42 16 16 S 1.30 28.79 13.20 -56.49 -0.75 28.05 16 17 C -0.49 -8.82 10.01 113.37 1.14 -7.68 16 18 O -0.91 -36.57 17.69 -148.98 -2.63 -39.21 16 19 C -0.12 -2.92 7.13 31.12 0.22 -2.70 16 20 C -0.13 -2.39 7.72 31.12 0.24 -2.15 16 21 C -0.08 -0.95 7.27 31.18 0.23 -0.72 16 22 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 2.09 7.38 -2.39 -0.02 2.07 16 24 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 25 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 28 H 0.34 16.61 5.80 -89.70 -0.52 16.09 16 29 H 0.07 2.18 5.83 -2.38 -0.01 2.16 16 30 H 0.02 0.71 7.32 -2.39 -0.02 0.70 16 31 H 0.06 1.42 7.30 -2.39 -0.02 1.40 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.03 1.07 6.79 -2.39 -0.02 1.05 16 35 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.29 7.62 -2.38 -0.02 1.27 16 38 H 0.14 0.50 8.10 -2.39 -0.02 0.48 16 39 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 Total: -1.00 -85.00 321.67 0.42 -84.58 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.49 Total: 19.33 kcal Atomic # 6 Polarization: -52.71 SS G_CDS: 3.82 Total: -48.90 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -2.54 Total: -91.95 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -2.63 Total: -39.21 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: 28.79 SS G_CDS: -0.75 Total: 28.05 kcal Total: -85.00 0.42 -84.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810293.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.264 kcal (2) G-P(sol) polarization free energy of solvation -84.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds