Wall clock time and date at job start Mon Mar 30 2020 04:41:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09000 * 109.47148 * 2 1
4 4 C 1.53006 * 109.47228 * 240.00367 * 2 1 3
5 5 C 1.50692 * 109.46942 * 174.99973 * 4 2 1
6 6 H 1.08004 * 120.00731 * 359.97438 * 5 4 2
7 7 C 1.37880 * 119.99936 * 179.97438 * 5 4 2
8 8 N 1.31520 * 119.99585 * 359.97438 * 7 5 4
9 9 Si 1.86804 * 120.00441 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.46703 * 59.99906 * 9 7 5
11 11 H 1.48492 * 109.47406 * 179.97438 * 9 7 5
12 12 H 1.48504 * 109.47025 * 300.00157 * 9 7 5
13 13 N 1.46897 * 109.47571 * 120.00087 * 2 1 3
14 14 C 1.46903 * 111.00031 * 275.00270 * 13 2 1
15 15 C 1.53001 * 109.47457 * 174.60979 * 14 13 2
16 16 S 1.81406 * 112.84987 * 292.62906 * 15 14 13
17 17 C 1.81405 * 102.99512 * 306.90731 * 16 15 14
18 18 O 1.42104 * 109.47047 * 63.29491 * 16 15 14
19 19 C 1.53785 * 113.61338 * 63.81601 * 15 14 13
20 20 C 1.53785 * 87.07643 * 89.11991 * 19 15 14
21 21 C 1.53780 * 87.17265 * 25.39147 * 20 19 15
22 22 H 1.09000 * 109.47148 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47586 * 299.99842 * 1 2 3
24 24 H 1.08999 * 109.47622 * 60.00347 * 1 2 3
25 25 H 1.08994 * 109.46675 * 294.99876 * 4 2 1
26 26 H 1.08996 * 109.46819 * 54.99811 * 4 2 1
27 27 H 0.97003 * 119.99401 * 179.97438 * 8 7 5
28 28 H 1.00898 * 111.00677 * 151.04589 * 13 2 1
29 29 H 1.09004 * 109.46862 * 54.60957 * 14 13 2
30 30 H 1.08995 * 109.47399 * 294.61217 * 14 13 2
31 31 H 1.09000 * 109.46852 * 65.77138 * 17 16 15
32 32 H 1.09006 * 109.46811 * 185.76102 * 17 16 15
33 33 H 1.08997 * 109.47507 * 305.76616 * 17 16 15
34 34 H 1.09004 * 113.61400 * 334.57405 * 19 15 14
35 35 H 1.08991 * 113.69063 * 203.67831 * 19 15 14
36 36 H 1.08997 * 113.61455 * 139.98082 * 20 19 15
37 37 H 1.09005 * 113.61141 * 270.80346 * 20 19 15
38 38 H 1.08994 * 113.61582 * 89.15658 * 21 20 19
39 39 H 1.09002 * 113.61170 * 220.06030 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 3.5418 -0.6148 -1.3127
6 1 4.0789 -0.0854 -0.5396
7 6 4.2304 -1.1934 -2.3578
8 7 3.5764 -1.8385 -3.2991
9 14 6.0920 -1.0610 -2.4369
10 1 6.6845 -1.6861 -1.2272
11 1 6.5872 -1.7620 -3.6487
12 1 6.4844 0.3700 -2.4973
13 7 2.0197 -0.6925 1.1994
14 6 2.0825 0.2226 2.3469
15 6 2.4663 -0.5610 3.6037
16 16 1.1788 -1.7264 4.1279
17 6 -0.2997 -0.6806 4.2335
18 8 0.9919 -2.7105 3.1199
19 6 3.8707 -1.1841 3.5362
20 6 4.3975 0.1324 4.1315
21 6 2.9998 0.3268 4.7427
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 1.7516 -1.7714 -1.2057
26 1 1.6053 -0.2616 -2.1370
27 1 4.0609 -2.2452 -4.0345
28 1 2.9173 -1.1205 1.0287
29 1 1.1083 0.6893 2.4930
30 1 2.8296 0.9931 2.1568
31 1 -0.5641 -0.3237 3.2380
32 1 -1.1267 -1.2609 4.6429
33 1 -0.0968 0.1710 4.8828
34 1 4.2162 -1.3728 2.5198
35 1 4.0005 -2.0434 4.1939
36 1 5.1831 -0.0076 4.8740
37 1 4.6533 0.8797 3.3803
38 1 2.8899 -0.1186 5.7314
39 1 2.6434 1.3559 4.6989
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695810293.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:07
Heat of formation + Delta-G solvation = -53.318017 kcal
Electronic energy + Delta-G solvation = -18485.363141 eV
Core-core repulsion = 15746.870379 eV
Total energy + Delta-G solvation = -2738.492762 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 259.135 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.14836 -37.82170 -36.41718 -34.84594 -32.25934 -29.79131 -29.41774 -27.55123
-26.37865 -25.26682 -23.95109 -21.24210 -19.84162 -18.62032 -18.15735 -17.33948
-16.71265 -16.49162 -16.21700 -15.49925 -15.33067 -14.96550 -14.78409 -14.19479
-13.92479 -13.65994 -13.57529 -13.40511 -13.22507 -13.13473 -13.01266 -12.70379
-12.66897 -12.50847 -12.39091 -12.20048 -12.00209 -11.56319 -11.22581 -11.17550
-11.02776 -10.66683 -10.41190 -9.28587 -8.94639 -8.27807 -6.40156 1.01423
1.30970 1.34916 1.42797 1.93609 2.32473 2.98362 3.06915 3.33861
3.66334 3.82210 3.98103 4.03483 4.13869 4.40176 4.41920 4.48407
4.53939 4.56724 4.65129 4.70494 4.82097 4.91286 4.99397 5.04385
5.15338 5.16754 5.23281 5.26060 5.35150 5.35526 5.42226 5.62586
5.72008 6.09580 6.33301 6.52324 6.73642 7.28598 8.84276
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.021742 B = 0.006652 C = 0.005750
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1287.498706 B = 4208.409212 C = 4867.992436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.097 3.903
3 H 0.026 0.974
4 C 0.030 3.970
5 C -0.537 4.537
6 H 0.055 0.945
7 C 0.002 3.998
8 N -0.931 5.931
9 Si 0.966 3.034
10 H -0.267 1.267
11 H -0.281 1.281
12 H -0.266 1.266
13 N -0.685 5.685
14 C 0.082 3.918
15 C -0.406 4.406
16 S 1.300 4.700
17 C -0.487 4.487
18 O -0.906 6.906
19 C -0.118 4.118
20 C -0.132 4.132
21 C -0.076 4.076
22 H 0.036 0.964
23 H 0.059 0.941
24 H 0.057 0.943
25 H -0.014 1.014
26 H -0.005 1.005
27 H 0.265 0.735
28 H 0.340 0.660
29 H 0.074 0.926
30 H 0.022 0.978
31 H 0.055 0.945
32 H 0.112 0.888
33 H 0.144 0.856
34 H 0.031 0.969
35 H 0.109 0.891
36 H 0.094 0.906
37 H 0.056 0.944
38 H 0.141 0.859
39 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.779 6.022 24.059 24.865
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.013 4.013
3 H 0.044 0.956
4 C -0.007 4.007
5 C -0.575 4.575
6 H 0.073 0.927
7 C -0.196 4.196
8 N -0.571 5.571
9 Si 0.790 3.210
10 H -0.192 1.192
11 H -0.206 1.206
12 H -0.190 1.190
13 N -0.318 5.318
14 C -0.048 4.048
15 C -0.504 4.504
16 S 1.500 4.500
17 C -0.645 4.645
18 O -0.902 6.902
19 C -0.157 4.157
20 C -0.170 4.170
21 C -0.115 4.115
22 H 0.056 0.944
23 H 0.078 0.922
24 H 0.076 0.924
25 H 0.004 0.996
26 H 0.013 0.987
27 H 0.073 0.927
28 H 0.160 0.840
29 H 0.092 0.908
30 H 0.040 0.960
31 H 0.075 0.925
32 H 0.131 0.869
33 H 0.163 0.837
34 H 0.050 0.950
35 H 0.127 0.873
36 H 0.113 0.887
37 H 0.075 0.925
38 H 0.159 0.841
39 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -2.333 4.686 24.204 24.764
hybrid contribution 0.938 1.190 -3.443 3.762
sum -1.394 5.876 20.761 21.622
Atomic orbital electron populations
1.21706 0.95034 1.00698 1.00926 1.21382 0.94720 0.94713 0.90455
0.95565 1.19092 0.95292 0.94123 0.92238 1.21412 0.92942 1.34649
1.08526 0.92672 1.25996 1.04008 0.94507 0.95135 1.70111 1.37918
1.36371 1.12697 0.85485 0.78922 0.78706 0.77850 1.19188 1.20584
1.19034 1.60575 1.34145 1.32485 1.04626 1.21768 1.00007 0.93287
0.89692 1.28760 1.09632 1.10165 1.01840 1.69079 0.87311 0.81751
1.11878 1.27615 1.16595 1.14012 1.06326 1.93083 1.84171 1.48427
1.64510 1.22658 0.92921 0.99290 1.00805 1.22765 0.98537 0.95643
1.00088 1.22731 0.93311 0.99216 0.96197 0.94439 0.92171 0.92406
0.99590 0.98654 0.92670 0.83996 0.90761 0.96029 0.92524 0.86941
0.83741 0.95010 0.87311 0.88743 0.92480 0.84140 0.89832
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.15 9.41 71.98 0.68 -4.47 16
2 C 0.10 4.54 2.59 44.92 0.12 4.65 16
3 H 0.03 1.22 7.86 -2.39 -0.02 1.20 16
4 C 0.03 1.73 4.57 29.85 0.14 1.87 16
5 C -0.54 -32.08 8.12 25.60 0.21 -31.87 16
6 H 0.06 3.15 7.49 -2.91 -0.02 3.13 16
7 C 0.00 0.11 5.46 84.65 0.46 0.57 16
8 N -0.93 -59.60 13.29 21.45 0.28 -59.31 16
9 Si 0.97 46.07 29.54 68.60 2.03 48.10 16
10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16
11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16
12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
13 N -0.69 -29.81 5.75 -491.57 -2.82 -32.64 16
14 C 0.08 2.63 4.64 86.30 0.40 3.03 16
15 C -0.41 -9.41 0.97 -10.21 -0.01 -9.42 16
16 S 1.30 28.79 13.20 -56.49 -0.75 28.05 16
17 C -0.49 -8.82 10.01 113.37 1.14 -7.68 16
18 O -0.91 -36.57 17.69 -148.98 -2.63 -39.21 16
19 C -0.12 -2.92 7.13 31.12 0.22 -2.70 16
20 C -0.13 -2.39 7.72 31.12 0.24 -2.15 16
21 C -0.08 -0.95 7.27 31.18 0.23 -0.72 16
22 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16
23 H 0.06 2.09 7.38 -2.39 -0.02 2.07 16
24 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
25 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16
26 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16
27 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16
28 H 0.34 16.61 5.80 -89.70 -0.52 16.09 16
29 H 0.07 2.18 5.83 -2.38 -0.01 2.16 16
30 H 0.02 0.71 7.32 -2.39 -0.02 0.70 16
31 H 0.06 1.42 7.30 -2.39 -0.02 1.40 16
32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16
33 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16
34 H 0.03 1.07 6.79 -2.39 -0.02 1.05 16
35 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16
36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
37 H 0.06 1.29 7.62 -2.38 -0.02 1.27 16
38 H 0.14 0.50 8.10 -2.39 -0.02 0.48 16
39 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16
Total: -1.00 -85.00 321.67 0.42 -84.58
By element:
Atomic # 1 Polarization: 18.83 SS G_CDS: 0.49 Total: 19.33 kcal
Atomic # 6 Polarization: -52.71 SS G_CDS: 3.82 Total: -48.90 kcal
Atomic # 7 Polarization: -89.41 SS G_CDS: -2.54 Total: -91.95 kcal
Atomic # 8 Polarization: -36.57 SS G_CDS: -2.63 Total: -39.21 kcal
Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal
Atomic # 16 Polarization: 28.79 SS G_CDS: -0.75 Total: 28.05 kcal
Total: -85.00 0.42 -84.58 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695810293.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.264 kcal
(2) G-P(sol) polarization free energy of solvation -84.998 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.733 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.582 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.318 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds