Wall clock time and date at job start Mon Mar 30 2020 04:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46421 * 2 1 4 4 C 1.52999 * 109.46756 * 240.00571 * 2 1 3 5 5 C 1.50701 * 109.46815 * 172.83193 * 4 2 1 6 6 H 1.07998 * 120.00037 * 355.27275 * 5 4 2 7 7 C 1.37878 * 119.99931 * 175.26723 * 5 4 2 8 8 N 1.31508 * 120.00372 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99916 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47095 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.46812 * 60.00694 * 9 7 5 12 12 H 1.48493 * 109.47304 * 300.00567 * 9 7 5 13 13 N 1.46894 * 109.47028 * 120.00558 * 2 1 3 14 14 C 1.46466 * 111.00342 * 71.71569 * 13 2 1 15 15 C 1.53245 * 109.86254 * 197.76355 * 14 13 2 16 16 S 1.81901 * 108.50497 * 297.99993 * 15 14 13 17 17 C 1.81894 * 101.91514 * 51.30499 * 16 15 14 18 18 C 1.46475 * 110.99742 * 197.69883 * 13 2 1 19 19 H 1.08993 * 109.40362 * 282.35283 * 18 13 2 20 20 C 1.52999 * 109.40420 * 42.11330 * 18 13 2 21 21 C 1.53004 * 109.47054 * 178.94975 * 20 18 13 22 22 O 1.42898 * 109.47480 * 184.69585 * 21 20 18 23 23 H 1.08999 * 109.47195 * 304.89608 * 1 2 3 24 24 H 1.09000 * 109.47217 * 64.89672 * 1 2 3 25 25 H 1.08999 * 109.46847 * 184.89934 * 1 2 3 26 26 H 1.08994 * 109.47321 * 52.83464 * 4 2 1 27 27 H 1.08998 * 109.47117 * 292.82607 * 4 2 1 28 28 H 0.97007 * 120.00051 * 0.02562 * 8 7 5 29 29 H 1.09001 * 109.40336 * 317.88621 * 14 13 2 30 30 H 1.09007 * 109.40262 * 77.64618 * 14 13 2 31 31 H 1.09000 * 109.63414 * 178.29419 * 15 14 13 32 32 H 1.08999 * 109.79213 * 57.79800 * 15 14 13 33 33 H 1.09008 * 109.63193 * 188.98949 * 17 16 15 34 34 H 1.09003 * 109.80139 * 68.49680 * 17 16 15 35 35 H 1.08998 * 109.47447 * 298.95132 * 20 18 13 36 36 H 1.09004 * 109.47233 * 58.95520 * 20 18 13 37 37 H 1.08998 * 109.47086 * 304.70459 * 21 20 18 38 38 H 1.09005 * 109.46686 * 64.69494 * 21 20 18 39 39 H 0.96698 * 113.99870 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5365 -0.5694 -1.3412 6 1 4.0614 0.0487 -0.6279 7 6 4.2356 -1.2199 -2.3358 8 7 3.5965 -1.9723 -3.2046 9 14 6.0906 -1.0313 -2.4501 10 1 6.5992 -1.8261 -3.5967 11 1 6.7159 -1.5188 -1.1944 12 1 6.4312 0.4002 -2.6494 13 7 2.0197 -0.6926 1.1993 14 6 1.7902 -2.1359 1.1025 15 6 1.8876 -2.7730 2.4928 16 16 3.5701 -2.5096 3.1320 17 6 3.7809 -0.7169 2.9071 18 6 3.4229 -0.3629 1.4597 19 1 4.0600 -0.9289 0.7802 20 6 3.6439 1.1340 1.2329 21 6 5.1033 1.4848 1.5298 22 8 5.2844 2.8983 1.4243 23 1 -0.3633 0.5879 0.8429 24 1 -0.3634 0.4360 -0.9306 25 1 -0.3633 -1.0239 0.0878 26 1 1.5758 -0.2866 -2.1346 27 1 1.7852 -1.7791 -1.1876 28 1 2.6331 -2.0694 -3.1460 29 1 0.7981 -2.3179 0.6893 30 1 2.5408 -2.5788 0.4477 31 1 1.6865 -3.8419 2.4208 32 1 1.1644 -2.3086 3.1631 33 1 4.8169 -0.4422 3.1058 34 1 3.1223 -0.1793 3.5893 35 1 3.4141 1.3823 0.1968 36 1 2.9915 1.7022 1.8960 37 1 5.3569 1.1602 2.5389 38 1 5.7512 0.9809 0.8125 39 1 6.1883 3.1932 1.6005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695845438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:38 Heat of formation + Delta-G solvation = -44.629682 kcal Electronic energy + Delta-G solvation = -19244.971729 eV Core-core repulsion = 16506.855721 eV Total energy + Delta-G solvation = -2738.116008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.21526 -36.63902 -33.74403 -33.01500 -31.81887 -28.51405 -27.71937 -26.99321 -24.08301 -23.05592 -21.78043 -20.55881 -18.59536 -17.25026 -17.01378 -16.27886 -15.65562 -15.03147 -14.74205 -14.01374 -13.75225 -13.70798 -13.41241 -12.98765 -12.71054 -12.46942 -12.30559 -11.98131 -11.81156 -11.38716 -11.12050 -11.05936 -10.92479 -10.70537 -10.53876 -10.46703 -10.24981 -10.14066 -9.69098 -9.51305 -9.24148 -8.48036 -8.37787 -7.57415 -7.30506 -6.37576 -4.08597 2.13714 2.84161 3.37868 3.38957 3.56501 4.19699 4.48606 4.61459 5.12107 5.26088 5.36101 5.40556 5.46175 5.55644 5.61839 5.64211 5.70700 5.79445 5.83837 5.98857 6.04711 6.12017 6.17792 6.23201 6.46276 6.53675 6.61595 6.68721 6.71913 6.91710 7.20447 7.28797 7.74145 7.79381 7.83746 8.14715 8.40822 8.82947 9.62287 10.99969 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.010206 C = 0.008683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.353352 B = 2742.840585 C = 3224.070317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.083 0.917 4 C -0.019 4.019 5 C -0.611 4.611 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 1.053 2.947 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.530 5.530 14 C 0.056 3.944 15 C -0.068 4.068 16 S -0.289 6.289 17 C -0.070 4.070 18 C 0.084 3.916 19 H 0.098 0.902 20 C -0.118 4.118 21 C 0.075 3.925 22 O -0.574 6.574 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.006 0.994 27 H 0.015 0.985 28 H 0.268 0.732 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.049 0.951 39 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 3.185 10.981 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 H 0.101 0.899 4 C -0.057 4.057 5 C -0.649 4.649 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.546 5.546 9 Si 0.882 3.118 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.255 5.255 14 C -0.074 4.074 15 C -0.217 4.217 16 S -0.062 6.062 17 C -0.218 4.218 18 C -0.026 4.026 19 H 0.116 0.884 20 C -0.157 4.157 21 C -0.003 4.003 22 O -0.379 6.379 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.024 0.976 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.529 2.065 10.805 11.013 hybrid contribution -1.139 0.953 -0.137 1.491 sum -0.609 3.018 10.668 11.103 Atomic orbital electron populations 1.21852 0.96436 1.00942 1.00471 1.21846 0.93077 0.98840 0.89185 0.89902 1.19903 0.97303 0.95652 0.92844 1.22394 0.92249 1.33202 1.17064 0.91274 1.25685 1.06257 0.93639 0.92842 1.70773 1.11005 1.36983 1.35850 0.83756 0.75194 0.76321 0.76525 1.20747 1.21230 1.21338 1.61519 1.17678 1.07888 1.38371 1.22146 1.02417 0.88912 0.93917 1.23500 0.94634 1.03518 1.00012 1.86620 1.23156 1.12641 1.83816 1.23728 1.04374 0.92880 1.00834 1.21894 0.91341 0.95883 0.93491 0.88445 1.21829 0.94386 0.95011 1.04515 1.22300 0.98092 0.80881 0.99068 1.86474 1.33975 1.23187 1.94256 0.93355 0.92946 0.93401 0.97571 0.96726 0.92109 0.90475 0.91688 0.88382 0.89883 0.88286 0.89964 0.88073 0.91659 0.94018 0.93268 0.78027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.32 37.16 0.35 -1.99 16 2 C 0.08 1.52 2.32 -67.71 -0.16 1.36 16 3 H 0.08 1.67 5.10 -51.93 -0.26 1.40 16 4 C -0.02 -0.45 3.36 -27.88 -0.09 -0.54 16 5 C -0.61 -15.70 6.93 -34.44 -0.24 -15.94 16 6 H 0.07 1.69 3.32 -52.49 -0.17 1.51 16 7 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 8 N -0.91 -26.98 13.65 55.43 0.76 -26.22 16 9 Si 1.05 24.57 29.90 -169.99 -5.08 19.49 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.53 -9.60 4.21 -219.11 -0.92 -10.52 16 14 C 0.06 0.99 3.93 -3.93 -0.02 0.98 16 15 C -0.07 -1.04 6.69 37.28 0.25 -0.79 16 16 S -0.29 -4.76 22.40 -107.50 -2.41 -7.17 16 17 C -0.07 -1.09 5.63 37.29 0.21 -0.88 16 18 C 0.08 1.51 1.22 -67.82 -0.08 1.42 16 19 H 0.10 2.11 5.44 -51.93 -0.28 1.83 16 20 C -0.12 -2.06 3.34 -26.73 -0.09 -2.15 16 21 C 0.07 1.15 6.79 37.16 0.25 1.40 16 22 O -0.57 -8.52 13.66 -35.23 -0.48 -9.00 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16 26 H 0.01 0.16 8.13 -51.93 -0.42 -0.27 16 27 H 0.01 0.37 5.86 -51.93 -0.30 0.06 16 28 H 0.27 7.96 7.19 -40.82 -0.29 7.66 16 29 H 0.08 1.33 6.04 -51.93 -0.31 1.02 16 30 H 0.06 1.40 6.93 -51.93 -0.36 1.04 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.41 6.21 -51.92 -0.32 1.09 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 2.04 4.51 -51.93 -0.23 1.81 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.55 6.11 -51.93 -0.32 0.23 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.37 3.62 9.12 45.56 0.42 4.04 16 LS Contribution 297.46 15.07 4.48 4.48 Total: -1.00 -29.37 297.46 -8.33 -37.70 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.96 Total: 7.92 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 0.28 Total: -16.67 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.17 Total: -36.75 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.48 Total: -9.00 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.49 kcal Atomic # 16 Polarization: -4.76 SS G_CDS: -2.41 Total: -7.17 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.37 -8.33 -37.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695845438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.933 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds