Wall clock time and date at job start Mon Mar 30 2020 04:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46421 * 2 1 4 4 C 1.52999 * 109.46756 * 240.00571 * 2 1 3 5 5 C 1.50701 * 109.46815 * 172.83193 * 4 2 1 6 6 H 1.07998 * 120.00037 * 355.27275 * 5 4 2 7 7 C 1.37878 * 119.99931 * 175.26723 * 5 4 2 8 8 N 1.31508 * 120.00372 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99916 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47095 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.46812 * 60.00694 * 9 7 5 12 12 H 1.48493 * 109.47304 * 300.00567 * 9 7 5 13 13 N 1.46894 * 109.47028 * 120.00558 * 2 1 3 14 14 C 1.46466 * 111.00342 * 71.71569 * 13 2 1 15 15 C 1.53245 * 109.86254 * 197.76355 * 14 13 2 16 16 S 1.81901 * 108.50497 * 297.99993 * 15 14 13 17 17 C 1.81894 * 101.91514 * 51.30499 * 16 15 14 18 18 C 1.46475 * 110.99742 * 197.69883 * 13 2 1 19 19 H 1.08993 * 109.40362 * 282.35283 * 18 13 2 20 20 C 1.52999 * 109.40420 * 42.11330 * 18 13 2 21 21 C 1.53004 * 109.47054 * 178.94975 * 20 18 13 22 22 O 1.42898 * 109.47480 * 184.69585 * 21 20 18 23 23 H 1.08999 * 109.47195 * 304.89608 * 1 2 3 24 24 H 1.09000 * 109.47217 * 64.89672 * 1 2 3 25 25 H 1.08999 * 109.46847 * 184.89934 * 1 2 3 26 26 H 1.08994 * 109.47321 * 52.83464 * 4 2 1 27 27 H 1.08998 * 109.47117 * 292.82607 * 4 2 1 28 28 H 0.97007 * 120.00051 * 0.02562 * 8 7 5 29 29 H 1.09001 * 109.40336 * 317.88621 * 14 13 2 30 30 H 1.09007 * 109.40262 * 77.64618 * 14 13 2 31 31 H 1.09000 * 109.63414 * 178.29419 * 15 14 13 32 32 H 1.08999 * 109.79213 * 57.79800 * 15 14 13 33 33 H 1.09008 * 109.63193 * 188.98949 * 17 16 15 34 34 H 1.09003 * 109.80139 * 68.49680 * 17 16 15 35 35 H 1.08998 * 109.47447 * 298.95132 * 20 18 13 36 36 H 1.09004 * 109.47233 * 58.95520 * 20 18 13 37 37 H 1.08998 * 109.47086 * 304.70459 * 21 20 18 38 38 H 1.09005 * 109.46686 * 64.69494 * 21 20 18 39 39 H 0.96698 * 113.99870 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5365 -0.5694 -1.3412 6 1 4.0614 0.0487 -0.6279 7 6 4.2356 -1.2199 -2.3358 8 7 3.5965 -1.9723 -3.2046 9 14 6.0906 -1.0313 -2.4501 10 1 6.5992 -1.8261 -3.5967 11 1 6.7159 -1.5188 -1.1944 12 1 6.4312 0.4002 -2.6494 13 7 2.0197 -0.6926 1.1993 14 6 1.7902 -2.1359 1.1025 15 6 1.8876 -2.7730 2.4928 16 16 3.5701 -2.5096 3.1320 17 6 3.7809 -0.7169 2.9071 18 6 3.4229 -0.3629 1.4597 19 1 4.0600 -0.9289 0.7802 20 6 3.6439 1.1340 1.2329 21 6 5.1033 1.4848 1.5298 22 8 5.2844 2.8983 1.4243 23 1 -0.3633 0.5879 0.8429 24 1 -0.3634 0.4360 -0.9306 25 1 -0.3633 -1.0239 0.0878 26 1 1.5758 -0.2866 -2.1346 27 1 1.7852 -1.7791 -1.1876 28 1 2.6331 -2.0694 -3.1460 29 1 0.7981 -2.3179 0.6893 30 1 2.5408 -2.5788 0.4477 31 1 1.6865 -3.8419 2.4208 32 1 1.1644 -2.3086 3.1631 33 1 4.8169 -0.4422 3.1058 34 1 3.1223 -0.1793 3.5893 35 1 3.4141 1.3823 0.1968 36 1 2.9915 1.7022 1.8960 37 1 5.3569 1.1602 2.5389 38 1 5.7512 0.9809 0.8125 39 1 6.1883 3.1932 1.6005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695845438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:37 Heat of formation + Delta-G solvation = -65.737807 kcal Electronic energy + Delta-G solvation = -19245.887046 eV Core-core repulsion = 16506.855721 eV Total energy + Delta-G solvation = -2739.031325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73552 -37.84568 -35.50819 -34.57816 -33.42157 -29.86298 -29.09940 -28.83120 -25.45679 -24.95300 -23.23502 -22.03459 -20.11120 -18.99657 -18.50052 -17.61006 -17.12040 -16.44629 -16.15663 -15.65409 -15.47752 -15.02638 -14.88251 -14.48266 -14.16694 -14.01630 -13.71532 -13.37240 -13.22781 -12.91207 -12.78424 -12.67959 -12.48025 -12.41342 -12.19901 -12.00510 -11.86035 -11.66049 -11.16052 -10.82959 -10.59294 -10.50293 -10.41933 -9.16769 -8.64073 -8.55488 -6.26297 0.87227 1.46455 1.53953 1.57408 1.70100 2.54688 2.81427 3.23408 3.40766 3.77845 3.93874 4.06443 4.17062 4.22640 4.24874 4.38780 4.42379 4.48118 4.51998 4.55932 4.66019 4.72205 4.77226 4.86692 4.95038 5.00643 5.11500 5.13867 5.22238 5.30594 5.41380 5.46758 6.05204 6.19750 6.26926 6.29270 6.66675 6.91793 7.51929 8.80636 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.010206 C = 0.008683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.353352 B = 2742.840585 C = 3224.070317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.083 3.917 3 H 0.080 0.920 4 C -0.014 4.014 5 C -0.602 4.602 6 H 0.084 0.916 7 C -0.036 4.036 8 N -0.946 5.946 9 Si 1.093 2.907 10 H -0.291 1.291 11 H -0.266 1.266 12 H -0.269 1.269 13 N -0.518 5.518 14 C 0.061 3.939 15 C -0.057 4.057 16 S -0.311 6.311 17 C -0.059 4.059 18 C 0.086 3.914 19 H 0.058 0.942 20 C -0.113 4.113 21 C 0.079 3.921 22 O -0.589 6.589 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.051 0.949 26 H -0.021 1.021 27 H -0.004 1.004 28 H 0.253 0.747 29 H 0.082 0.918 30 H 0.021 0.979 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 4.225 13.486 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.025 4.025 3 H 0.098 0.902 4 C -0.052 4.052 5 C -0.640 4.640 6 H 0.101 0.899 7 C -0.234 4.234 8 N -0.584 5.584 9 Si 0.916 3.084 10 H -0.217 1.217 11 H -0.191 1.191 12 H -0.194 1.194 13 N -0.241 5.241 14 C -0.069 4.069 15 C -0.205 4.205 16 S -0.084 6.084 17 C -0.207 4.207 18 C -0.024 4.024 19 H 0.076 0.924 20 C -0.152 4.152 21 C 0.000 4.000 22 O -0.397 6.397 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.070 0.930 26 H -0.003 1.003 27 H 0.014 0.986 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.039 0.961 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.915 3.125 13.340 13.732 hybrid contribution -1.280 0.660 -0.903 1.700 sum -0.365 3.786 12.437 13.006 Atomic orbital electron populations 1.21776 0.94034 1.01674 1.01493 1.21748 0.95038 0.98042 0.87647 0.90239 1.19849 0.96425 0.94851 0.94061 1.22836 0.93416 1.31593 1.16149 0.89851 1.26995 1.09960 0.93470 0.92950 1.70903 1.10114 1.39626 1.37797 0.83257 0.71083 0.77167 0.76928 1.21718 1.19149 1.19421 1.61669 1.17856 1.07835 1.36781 1.22075 1.01207 0.88565 0.95063 1.23478 0.94342 1.04508 0.98189 1.86739 1.24343 1.13719 1.83598 1.23690 1.05868 0.92218 0.98936 1.21775 0.90252 0.95844 0.94502 0.92438 1.21693 0.96371 0.94465 1.02633 1.22195 0.96160 0.81326 1.00273 1.86417 1.36274 1.22607 1.94437 0.91100 0.92938 0.93028 1.00300 0.98573 0.93756 0.89997 0.96091 0.86787 0.87921 0.86525 0.88327 0.91361 0.90634 0.91132 0.94567 0.75364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.32 71.98 0.67 -3.59 16 2 C 0.08 3.22 2.32 44.92 0.10 3.32 16 3 H 0.08 3.17 5.10 -2.39 -0.01 3.15 16 4 C -0.01 -0.67 3.36 29.85 0.10 -0.57 16 5 C -0.60 -31.70 6.93 25.60 0.18 -31.52 16 6 H 0.08 4.10 3.32 -2.91 -0.01 4.09 16 7 C -0.04 -2.05 5.46 84.66 0.46 -1.59 16 8 N -0.95 -58.32 13.65 21.45 0.29 -58.03 16 9 Si 1.09 49.91 29.90 68.60 2.05 51.96 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 13 N -0.52 -18.15 4.21 -847.12 -3.56 -21.71 16 14 C 0.06 2.14 3.93 86.47 0.34 2.48 16 15 C -0.06 -1.62 6.69 72.06 0.48 -1.14 16 16 S -0.31 -9.59 22.40 -56.49 -1.27 -10.85 16 17 C -0.06 -1.67 5.63 72.07 0.41 -1.27 16 18 C 0.09 2.99 1.22 45.08 0.06 3.04 16 19 H 0.06 2.49 5.44 -2.39 -0.01 2.48 16 20 C -0.11 -3.72 3.34 30.60 0.10 -3.62 16 21 C 0.08 2.21 6.79 71.98 0.49 2.70 16 22 O -0.59 -15.85 13.66 -148.98 -2.04 -17.88 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.61 6.39 -2.39 -0.02 1.59 16 26 H -0.02 -1.15 8.13 -2.39 -0.02 -1.17 16 27 H 0.00 -0.21 5.86 -2.39 -0.01 -0.22 16 28 H 0.25 15.85 7.19 -92.70 -0.67 15.18 16 29 H 0.08 2.78 6.04 -2.39 -0.01 2.77 16 30 H 0.02 0.92 6.93 -2.38 -0.02 0.91 16 31 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.12 2.90 6.21 -2.38 -0.01 2.89 16 34 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.07 2.72 4.51 -2.39 -0.01 2.71 16 36 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.07 1.58 6.11 -2.39 -0.01 1.57 16 38 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.40 6.45 9.12 -74.06 -0.68 5.77 16 Total: -1.00 -65.08 297.46 -0.64 -65.73 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.49 Total: 22.54 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.39 Total: -31.74 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.27 Total: -79.74 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -2.04 Total: -17.88 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Atomic # 16 Polarization: -9.59 SS G_CDS: -1.27 Total: -10.85 kcal Total: -65.08 -0.64 -65.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695845438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.010 kcal (2) G-P(sol) polarization free energy of solvation -65.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds