Wall clock time and date at job start Mon Mar 30 2020 05:11:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34233 * 117.00043 * 2 1
4 4 O 1.20824 * 119.99870 * 359.97438 * 3 2 1
5 5 C 1.50701 * 119.99710 * 180.02562 * 3 2 1
6 6 C 1.52996 * 109.88000 * 84.29594 * 5 3 2
7 7 C 1.52997 * 109.47131 * 300.41803 * 6 5 3
8 8 C 1.53006 * 109.47127 * 180.02562 * 7 6 5
9 9 C 1.50698 * 109.47184 * 179.97438 * 8 7 6
10 10 H 1.08005 * 119.99819 * 0.02562 * 9 8 7
11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7
12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 8
13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8
14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9
15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9
16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9
17 17 C 1.54313 * 110.01968 * 205.41206 * 5 3 2
18 18 C 1.55146 * 103.01791 * 97.19637 * 17 5 3
19 19 H 1.09002 * 110.98750 * 153.74395 * 18 17 5
20 20 F 1.39901 * 111.02295 * 277.54721 * 18 17 5
21 21 C 1.54900 * 101.65305 * 35.65415 * 18 17 5
22 22 N 1.47443 * 109.88520 * 323.26158 * 5 3 2
23 23 H 1.08999 * 109.47249 * 180.02562 * 1 2 3
24 24 H 1.09003 * 109.47308 * 300.00511 * 1 2 3
25 25 H 1.09007 * 109.47013 * 60.00222 * 1 2 3
26 26 H 1.09001 * 109.46997 * 180.42229 * 6 5 3
27 27 H 1.09004 * 109.47298 * 60.42086 * 6 5 3
28 28 H 1.09001 * 109.46832 * 60.00325 * 7 6 5
29 29 H 1.09001 * 109.47502 * 299.99847 * 7 6 5
30 30 H 1.08998 * 109.46509 * 60.00429 * 8 7 6
31 31 H 1.08993 * 109.46955 * 299.99989 * 8 7 6
32 32 H 0.97001 * 119.99934 * 359.97438 * 12 11 9
33 33 H 1.08999 * 110.70851 * 215.57757 * 17 5 3
34 34 H 1.09002 * 110.70921 * 338.81620 * 17 5 3
35 35 H 1.09000 * 110.37705 * 204.09937 * 21 18 17
36 36 H 1.09003 * 110.46790 * 81.80726 * 21 18 17
37 37 H 1.00904 * 110.99700 * 117.18423 * 22 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5664 1.2748 -0.0006
6 6 4.0928 1.1595 -1.4325
7 6 3.6484 -0.1756 -2.0333
8 6 4.1754 -0.2912 -3.4651
9 6 3.7382 -1.6064 -4.0566
10 1 3.1435 -2.2912 -3.4702
11 6 4.0965 -1.9351 -5.3468
12 7 4.8202 -1.1010 -6.0611
13 14 3.5539 -3.5651 -6.0803
14 1 4.0655 -3.6774 -7.4699
15 1 2.0705 -3.6336 -6.0915
16 1 4.0948 -4.6805 -5.2626
17 6 4.0257 2.6101 0.6217
18 6 4.3446 2.2204 2.0891
19 1 5.0854 2.8942 2.5198
20 9 3.1814 2.1960 2.8661
21 6 4.9257 0.7951 1.9151
22 7 4.1256 0.1913 0.8283
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3634 0.5139 0.8900
25 1 -0.3633 0.5138 -0.8901
26 1 5.1816 1.2097 -1.4244
27 1 3.6957 1.9782 -2.0327
28 1 2.5596 -0.2258 -2.0414
29 1 4.0455 -0.9943 -1.4332
30 1 5.2642 -0.2411 -3.4565
31 1 3.7787 0.5275 -4.0654
32 1 5.1016 -0.2544 -5.6803
33 1 4.9183 2.9826 0.1192
34 1 3.2247 3.3485 0.5844
35 1 4.8089 0.2227 2.8353
36 1 5.9768 0.8441 1.6304
37 1 4.6867 -0.4366 0.2723
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000707404462.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:11:55
Heat of formation + Delta-G solvation = -150.540841 kcal
Electronic energy + Delta-G solvation = -20412.672586 eV
Core-core repulsion = 17103.750750 eV
Total energy + Delta-G solvation = -3308.921837 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.137 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-47.71206 -40.66583 -38.27071 -36.15892 -34.61518 -32.48025 -30.25588 -29.60771
-27.52260 -25.98576 -23.44355 -22.90850 -21.70940 -20.45592 -19.57762 -17.59224
-17.33278 -16.62206 -16.56127 -16.02569 -15.50913 -14.91658 -14.67786 -14.12456
-13.96478 -13.71419 -13.23557 -13.19090 -13.03224 -12.59833 -12.22863 -12.05685
-11.90301 -11.54584 -11.42760 -11.32952 -11.09178 -10.76723 -10.59505 -10.47552
-10.29516 -10.12276 -9.83083 -9.69522 -8.68774 -8.51449 -8.32224 -6.35535
-4.04355 2.42531 2.94399 3.44751 3.46602 3.65284 3.76378 4.08112
4.30079 4.44240 4.54128 4.59215 4.88213 5.01933 5.08954 5.25781
5.30125 5.37935 5.41487 5.52808 5.54895 5.66776 5.69562 5.75213
5.90340 6.07461 6.44318 6.54480 6.60537 6.68446 6.92680 7.16003
7.39416 7.50322 8.01993 8.22714 8.47841 8.89336 9.67761 11.05010
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.027250 B = 0.005248 C = 0.004836
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1027.276882 B = 5333.740081 C = 5788.171606
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.330 6.330
3 C 0.495 3.505
4 O -0.520 6.520
5 C 0.115 3.885
6 C -0.130 4.130
7 C -0.104 4.104
8 C 0.009 3.991
9 C -0.600 4.600
10 H 0.050 0.950
11 C 0.014 3.986
12 N -0.914 5.914
13 Si 1.068 2.932
14 H -0.283 1.283
15 H -0.288 1.288
16 H -0.288 1.288
17 C -0.157 4.157
18 C 0.077 3.923
19 H 0.102 0.898
20 F -0.200 7.200
21 C 0.021 3.979
22 N -0.661 5.661
23 H 0.099 0.901
24 H 0.057 0.943
25 H 0.060 0.940
26 H 0.077 0.923
27 H 0.074 0.926
28 H 0.057 0.943
29 H 0.059 0.941
30 H 0.006 0.994
31 H 0.005 0.995
32 H 0.267 0.733
33 H 0.102 0.898
34 H 0.107 0.893
35 H 0.095 0.905
36 H 0.067 0.933
37 H 0.361 0.639
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.658 5.545 16.073 17.015
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.244 6.244
3 C 0.337 3.663
4 O -0.408 6.408
5 C 0.022 3.978
6 C -0.168 4.168
7 C -0.142 4.142
8 C -0.028 4.028
9 C -0.638 4.638
10 H 0.068 0.932
11 C -0.190 4.190
12 N -0.551 5.551
13 Si 0.896 3.104
14 H -0.208 1.208
15 H -0.215 1.215
16 H -0.214 1.214
17 C -0.196 4.196
18 C 0.040 3.960
19 H 0.120 0.880
20 F -0.181 7.181
21 C -0.108 4.108
22 N -0.296 5.296
23 H 0.118 0.882
24 H 0.076 0.924
25 H 0.079 0.921
26 H 0.096 0.904
27 H 0.092 0.908
28 H 0.076 0.924
29 H 0.077 0.923
30 H 0.024 0.976
31 H 0.023 0.977
32 H 0.078 0.922
33 H 0.121 0.879
34 H 0.125 0.875
35 H 0.113 0.887
36 H 0.085 0.915
37 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges -1.426 4.757 15.102 15.898
hybrid contribution 0.387 1.301 0.934 1.648
sum -1.040 6.058 16.037 17.174
Atomic orbital electron populations
1.23248 0.77396 1.03541 1.01967 1.86647 1.22273 1.32583 1.82911
1.23273 0.91053 0.81304 0.70626 1.90604 1.66744 1.36735 1.46752
1.21412 0.88504 0.91710 0.96204 1.22254 1.01156 1.01938 0.91495
1.21600 1.00879 0.93126 0.98614 1.19222 0.95439 0.97402 0.90749
1.22054 1.36886 1.03666 1.01185 0.93207 1.25851 0.94787 1.04069
0.94269 1.70792 1.34492 1.10316 1.39491 0.83556 0.76037 0.74579
0.76189 1.20818 1.21458 1.21410 1.23545 1.04510 0.97217 0.94283
1.22655 0.84588 0.98180 0.90568 0.88027 1.92844 1.51465 1.97543
1.76212 1.23511 0.96359 0.93886 0.97087 1.61732 1.38717 1.16057
1.13051 0.88214 0.92401 0.92115 0.90417 0.90761 0.92410 0.92275
0.97596 0.97676 0.92229 0.87909 0.87495 0.88723 0.91520 0.81750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.45 10.56 101.05 1.07 1.52 16
2 O -0.33 -5.68 8.99 -39.27 -0.35 -6.04 16
3 C 0.49 8.66 6.10 36.01 0.22 8.88 16
4 O -0.52 -9.88 15.34 -18.75 -0.29 -10.17 16
5 C 0.11 1.69 0.87 -131.77 -0.11 1.57 16
6 C -0.13 -2.09 4.06 -26.73 -0.11 -2.20 16
7 C -0.10 -2.11 4.57 -26.73 -0.12 -2.23 16
8 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16
9 C -0.60 -17.11 9.11 -34.44 -0.31 -17.42 16
10 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16
11 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16
12 N -0.91 -28.08 13.65 55.43 0.76 -27.32 16
13 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16
14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16
16 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16
17 C -0.16 -1.89 5.77 -24.91 -0.14 -2.03 16
18 C 0.08 0.82 4.85 -24.59 -0.12 0.70 16
19 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16
20 F -0.20 -2.83 17.24 2.25 0.04 -2.79 16
21 C 0.02 0.21 7.38 -2.30 -0.02 0.20 16
22 N -0.66 -8.86 6.65 -98.29 -0.65 -9.51 16
23 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16
24 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16
25 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16
26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
28 H 0.06 1.24 6.41 -51.93 -0.33 0.91 16
29 H 0.06 1.16 6.69 -51.93 -0.35 0.81 16
30 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16
31 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16
32 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16
33 H 0.10 0.97 7.85 -51.93 -0.41 0.57 16
34 H 0.11 1.44 6.79 -51.93 -0.35 1.09 16
35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
37 H 0.36 4.76 6.74 -39.29 -0.26 4.49 16
LS Contribution 306.68 15.07 4.62 4.62
Total: -1.00 -33.82 306.68 -6.24 -40.07
By element:
Atomic # 1 Polarization: 6.86 SS G_CDS: -5.41 Total: 1.44 kcal
Atomic # 6 Polarization: -10.75 SS G_CDS: 0.13 Total: -10.62 kcal
Atomic # 7 Polarization: -36.94 SS G_CDS: 0.10 Total: -36.83 kcal
Atomic # 8 Polarization: -15.56 SS G_CDS: -0.64 Total: -16.20 kcal
Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal
Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -33.82 -6.24 -40.07 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000707404462.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -110.475 kcal
(2) G-P(sol) polarization free energy of solvation -33.821 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.296 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.541 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds