Wall clock time and date at job start Mon Mar 30 2020 05:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00043 * 2 1 4 4 O 1.20824 * 119.99870 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99710 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.88000 * 84.29594 * 5 3 2 7 7 C 1.52997 * 109.47131 * 300.41803 * 6 5 3 8 8 C 1.53006 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47184 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.54313 * 110.01968 * 205.41206 * 5 3 2 18 18 C 1.55146 * 103.01791 * 97.19637 * 17 5 3 19 19 H 1.09002 * 110.98750 * 153.74395 * 18 17 5 20 20 F 1.39901 * 111.02295 * 277.54721 * 18 17 5 21 21 C 1.54900 * 101.65305 * 35.65415 * 18 17 5 22 22 N 1.47443 * 109.88520 * 323.26158 * 5 3 2 23 23 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47308 * 300.00511 * 1 2 3 25 25 H 1.09007 * 109.47013 * 60.00222 * 1 2 3 26 26 H 1.09001 * 109.46997 * 180.42229 * 6 5 3 27 27 H 1.09004 * 109.47298 * 60.42086 * 6 5 3 28 28 H 1.09001 * 109.46832 * 60.00325 * 7 6 5 29 29 H 1.09001 * 109.47502 * 299.99847 * 7 6 5 30 30 H 1.08998 * 109.46509 * 60.00429 * 8 7 6 31 31 H 1.08993 * 109.46955 * 299.99989 * 8 7 6 32 32 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 33 33 H 1.08999 * 110.70851 * 215.57757 * 17 5 3 34 34 H 1.09002 * 110.70921 * 338.81620 * 17 5 3 35 35 H 1.09000 * 110.37705 * 204.09937 * 21 18 17 36 36 H 1.09003 * 110.46790 * 81.80726 * 21 18 17 37 37 H 1.00904 * 110.99700 * 117.18423 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0928 1.1595 -1.4325 7 6 3.6484 -0.1756 -2.0333 8 6 4.1754 -0.2912 -3.4651 9 6 3.7382 -1.6064 -4.0566 10 1 3.1435 -2.2912 -3.4702 11 6 4.0965 -1.9351 -5.3468 12 7 4.8202 -1.1010 -6.0611 13 14 3.5539 -3.5651 -6.0803 14 1 4.0655 -3.6774 -7.4699 15 1 2.0705 -3.6336 -6.0915 16 1 4.0948 -4.6805 -5.2626 17 6 4.0257 2.6101 0.6217 18 6 4.3446 2.2204 2.0891 19 1 5.0854 2.8942 2.5198 20 9 3.1814 2.1960 2.8661 21 6 4.9257 0.7951 1.9151 22 7 4.1256 0.1913 0.8283 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 5.1816 1.2097 -1.4244 27 1 3.6957 1.9782 -2.0327 28 1 2.5596 -0.2258 -2.0414 29 1 4.0455 -0.9943 -1.4332 30 1 5.2642 -0.2411 -3.4565 31 1 3.7787 0.5275 -4.0654 32 1 5.1016 -0.2544 -5.6803 33 1 4.9183 2.9826 0.1192 34 1 3.2247 3.3485 0.5844 35 1 4.8089 0.2227 2.8353 36 1 5.9768 0.8441 1.6304 37 1 4.6867 -0.4366 0.2723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707404462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:55 Heat of formation + Delta-G solvation = -150.540841 kcal Electronic energy + Delta-G solvation = -20412.672586 eV Core-core repulsion = 17103.750750 eV Total energy + Delta-G solvation = -3308.921837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.71206 -40.66583 -38.27071 -36.15892 -34.61518 -32.48025 -30.25588 -29.60771 -27.52260 -25.98576 -23.44355 -22.90850 -21.70940 -20.45592 -19.57762 -17.59224 -17.33278 -16.62206 -16.56127 -16.02569 -15.50913 -14.91658 -14.67786 -14.12456 -13.96478 -13.71419 -13.23557 -13.19090 -13.03224 -12.59833 -12.22863 -12.05685 -11.90301 -11.54584 -11.42760 -11.32952 -11.09178 -10.76723 -10.59505 -10.47552 -10.29516 -10.12276 -9.83083 -9.69522 -8.68774 -8.51449 -8.32224 -6.35535 -4.04355 2.42531 2.94399 3.44751 3.46602 3.65284 3.76378 4.08112 4.30079 4.44240 4.54128 4.59215 4.88213 5.01933 5.08954 5.25781 5.30125 5.37935 5.41487 5.52808 5.54895 5.66776 5.69562 5.75213 5.90340 6.07461 6.44318 6.54480 6.60537 6.68446 6.92680 7.16003 7.39416 7.50322 8.01993 8.22714 8.47841 8.89336 9.67761 11.05010 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.027250 B = 0.005248 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.276882 B = 5333.740081 C = 5788.171606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.330 6.330 3 C 0.495 3.505 4 O -0.520 6.520 5 C 0.115 3.885 6 C -0.130 4.130 7 C -0.104 4.104 8 C 0.009 3.991 9 C -0.600 4.600 10 H 0.050 0.950 11 C 0.014 3.986 12 N -0.914 5.914 13 Si 1.068 2.932 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.288 1.288 17 C -0.157 4.157 18 C 0.077 3.923 19 H 0.102 0.898 20 F -0.200 7.200 21 C 0.021 3.979 22 N -0.661 5.661 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.006 0.994 31 H 0.005 0.995 32 H 0.267 0.733 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 5.545 16.073 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.244 6.244 3 C 0.337 3.663 4 O -0.408 6.408 5 C 0.022 3.978 6 C -0.168 4.168 7 C -0.142 4.142 8 C -0.028 4.028 9 C -0.638 4.638 10 H 0.068 0.932 11 C -0.190 4.190 12 N -0.551 5.551 13 Si 0.896 3.104 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.214 1.214 17 C -0.196 4.196 18 C 0.040 3.960 19 H 0.120 0.880 20 F -0.181 7.181 21 C -0.108 4.108 22 N -0.296 5.296 23 H 0.118 0.882 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.426 4.757 15.102 15.898 hybrid contribution 0.387 1.301 0.934 1.648 sum -1.040 6.058 16.037 17.174 Atomic orbital electron populations 1.23248 0.77396 1.03541 1.01967 1.86647 1.22273 1.32583 1.82911 1.23273 0.91053 0.81304 0.70626 1.90604 1.66744 1.36735 1.46752 1.21412 0.88504 0.91710 0.96204 1.22254 1.01156 1.01938 0.91495 1.21600 1.00879 0.93126 0.98614 1.19222 0.95439 0.97402 0.90749 1.22054 1.36886 1.03666 1.01185 0.93207 1.25851 0.94787 1.04069 0.94269 1.70792 1.34492 1.10316 1.39491 0.83556 0.76037 0.74579 0.76189 1.20818 1.21458 1.21410 1.23545 1.04510 0.97217 0.94283 1.22655 0.84588 0.98180 0.90568 0.88027 1.92844 1.51465 1.97543 1.76212 1.23511 0.96359 0.93886 0.97087 1.61732 1.38717 1.16057 1.13051 0.88214 0.92401 0.92115 0.90417 0.90761 0.92410 0.92275 0.97596 0.97676 0.92229 0.87909 0.87495 0.88723 0.91520 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 101.05 1.07 1.52 16 2 O -0.33 -5.68 8.99 -39.27 -0.35 -6.04 16 3 C 0.49 8.66 6.10 36.01 0.22 8.88 16 4 O -0.52 -9.88 15.34 -18.75 -0.29 -10.17 16 5 C 0.11 1.69 0.87 -131.77 -0.11 1.57 16 6 C -0.13 -2.09 4.06 -26.73 -0.11 -2.20 16 7 C -0.10 -2.11 4.57 -26.73 -0.12 -2.23 16 8 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 9 C -0.60 -17.11 9.11 -34.44 -0.31 -17.42 16 10 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 11 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 12 N -0.91 -28.08 13.65 55.43 0.76 -27.32 16 13 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.16 -1.89 5.77 -24.91 -0.14 -2.03 16 18 C 0.08 0.82 4.85 -24.59 -0.12 0.70 16 19 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 20 F -0.20 -2.83 17.24 2.25 0.04 -2.79 16 21 C 0.02 0.21 7.38 -2.30 -0.02 0.20 16 22 N -0.66 -8.86 6.65 -98.29 -0.65 -9.51 16 23 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 25 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.24 6.41 -51.93 -0.33 0.91 16 29 H 0.06 1.16 6.69 -51.93 -0.35 0.81 16 30 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 31 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 32 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 33 H 0.10 0.97 7.85 -51.93 -0.41 0.57 16 34 H 0.11 1.44 6.79 -51.93 -0.35 1.09 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.36 4.76 6.74 -39.29 -0.26 4.49 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -33.82 306.68 -6.24 -40.07 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.41 Total: 1.44 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 0.13 Total: -10.62 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.10 Total: -36.83 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.64 Total: -16.20 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.82 -6.24 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707404462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.475 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds