Wall clock time and date at job start Mon Mar 30 2020 05:11:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34233 * 117.00043 * 2 1
4 4 O 1.20824 * 119.99870 * 359.97438 * 3 2 1
5 5 C 1.50701 * 119.99710 * 180.02562 * 3 2 1
6 6 C 1.52996 * 109.88000 * 84.29594 * 5 3 2
7 7 C 1.52997 * 109.47131 * 300.41803 * 6 5 3
8 8 C 1.53006 * 109.47127 * 180.02562 * 7 6 5
9 9 C 1.50698 * 109.47184 * 179.97438 * 8 7 6
10 10 H 1.08005 * 119.99819 * 0.02562 * 9 8 7
11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7
12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 8
13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8
14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9
15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9
16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9
17 17 C 1.54313 * 110.01968 * 205.41206 * 5 3 2
18 18 C 1.55146 * 103.01791 * 97.19637 * 17 5 3
19 19 H 1.09002 * 110.98750 * 153.74395 * 18 17 5
20 20 F 1.39901 * 111.02295 * 277.54721 * 18 17 5
21 21 C 1.54900 * 101.65305 * 35.65415 * 18 17 5
22 22 N 1.47443 * 109.88520 * 323.26158 * 5 3 2
23 23 H 1.08999 * 109.47249 * 180.02562 * 1 2 3
24 24 H 1.09003 * 109.47308 * 300.00511 * 1 2 3
25 25 H 1.09007 * 109.47013 * 60.00222 * 1 2 3
26 26 H 1.09001 * 109.46997 * 180.42229 * 6 5 3
27 27 H 1.09004 * 109.47298 * 60.42086 * 6 5 3
28 28 H 1.09001 * 109.46832 * 60.00325 * 7 6 5
29 29 H 1.09001 * 109.47502 * 299.99847 * 7 6 5
30 30 H 1.08998 * 109.46509 * 60.00429 * 8 7 6
31 31 H 1.08993 * 109.46955 * 299.99989 * 8 7 6
32 32 H 0.97001 * 119.99934 * 359.97438 * 12 11 9
33 33 H 1.08999 * 110.70851 * 215.57757 * 17 5 3
34 34 H 1.09002 * 110.70921 * 338.81620 * 17 5 3
35 35 H 1.09000 * 110.37705 * 204.09937 * 21 18 17
36 36 H 1.09003 * 110.46790 * 81.80726 * 21 18 17
37 37 H 1.00904 * 110.99700 * 117.18423 * 22 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5664 1.2748 -0.0006
6 6 4.0928 1.1595 -1.4325
7 6 3.6484 -0.1756 -2.0333
8 6 4.1754 -0.2912 -3.4651
9 6 3.7382 -1.6064 -4.0566
10 1 3.1435 -2.2912 -3.4702
11 6 4.0965 -1.9351 -5.3468
12 7 4.8202 -1.1010 -6.0611
13 14 3.5539 -3.5651 -6.0803
14 1 4.0655 -3.6774 -7.4699
15 1 2.0705 -3.6336 -6.0915
16 1 4.0948 -4.6805 -5.2626
17 6 4.0257 2.6101 0.6217
18 6 4.3446 2.2204 2.0891
19 1 5.0854 2.8942 2.5198
20 9 3.1814 2.1960 2.8661
21 6 4.9257 0.7951 1.9151
22 7 4.1256 0.1913 0.8283
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3634 0.5139 0.8900
25 1 -0.3633 0.5138 -0.8901
26 1 5.1816 1.2097 -1.4244
27 1 3.6957 1.9782 -2.0327
28 1 2.5596 -0.2258 -2.0414
29 1 4.0455 -0.9943 -1.4332
30 1 5.2642 -0.2411 -3.4565
31 1 3.7787 0.5275 -4.0654
32 1 5.1016 -0.2544 -5.6803
33 1 4.9183 2.9826 0.1192
34 1 3.2247 3.3485 0.5844
35 1 4.8089 0.2227 2.8353
36 1 5.9768 0.8441 1.6304
37 1 4.6867 -0.4366 0.2723
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000707404462.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:11:54
Heat of formation + Delta-G solvation = -173.221427 kcal
Electronic energy + Delta-G solvation = -20413.656090 eV
Core-core repulsion = 17103.750750 eV
Total energy + Delta-G solvation = -3309.905341 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.137 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-48.65306 -41.92114 -39.40038 -37.50035 -36.42180 -34.24244 -31.33738 -30.93925
-28.74317 -27.55817 -25.05026 -24.30681 -22.94245 -21.82945 -20.81979 -19.01765
-18.75765 -18.09656 -17.75123 -17.32092 -16.59538 -16.01841 -15.73682 -15.65092
-15.40266 -15.31745 -14.79651 -14.45078 -14.23951 -13.91396 -13.52488 -13.34609
-13.15409 -13.01823 -12.87694 -12.54694 -12.50521 -12.09757 -11.96326 -11.92230
-11.82799 -11.65660 -11.47856 -11.39862 -10.62648 -10.52973 -9.65109 -8.67375
-6.37510 1.10757 1.53167 1.61243 1.78048 1.80702 2.57328 2.80270
3.17015 3.19811 3.40367 3.46117 3.63452 3.83617 4.02056 4.10749
4.18353 4.24174 4.26692 4.37923 4.52482 4.61817 4.62190 4.71206
4.81117 4.87209 4.93518 5.02255 5.05601 5.34736 5.46838 5.51768
5.58116 6.02982 6.19190 6.20925 6.60311 6.71656 7.43646 8.73662
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.027250 B = 0.005248 C = 0.004836
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1027.276882 B = 5333.740081 C = 5788.171606
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.346 6.346
3 C 0.483 3.517
4 O -0.545 6.545
5 C 0.118 3.882
6 C -0.119 4.119
7 C -0.089 4.089
8 C 0.010 3.990
9 C -0.617 4.617
10 H 0.048 0.952
11 C -0.039 4.039
12 N -0.939 5.939
13 Si 1.115 2.885
14 H -0.283 1.283
15 H -0.272 1.272
16 H -0.266 1.266
17 C -0.155 4.155
18 C 0.073 3.927
19 H 0.145 0.855
20 F -0.224 7.224
21 C 0.022 3.978
22 N -0.675 5.675
23 H 0.126 0.874
24 H 0.064 0.936
25 H 0.054 0.946
26 H 0.102 0.898
27 H 0.064 0.936
28 H 0.039 0.961
29 H 0.066 0.934
30 H -0.001 1.001
31 H -0.018 1.018
32 H 0.255 0.745
33 H 0.133 0.867
34 H 0.088 0.912
35 H 0.099 0.901
36 H 0.100 0.900
37 H 0.361 0.639
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.233 4.963 17.316 18.015
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.260 6.260
3 C 0.327 3.673
4 O -0.435 6.435
5 C 0.025 3.975
6 C -0.158 4.158
7 C -0.127 4.127
8 C -0.027 4.027
9 C -0.655 4.655
10 H 0.067 0.933
11 C -0.236 4.236
12 N -0.576 5.576
13 Si 0.936 3.064
14 H -0.209 1.209
15 H -0.198 1.198
16 H -0.191 1.191
17 C -0.193 4.193
18 C 0.036 3.964
19 H 0.162 0.838
20 F -0.205 7.205
21 C -0.106 4.106
22 N -0.310 5.310
23 H 0.144 0.856
24 H 0.083 0.917
25 H 0.072 0.928
26 H 0.121 0.879
27 H 0.083 0.917
28 H 0.058 0.942
29 H 0.085 0.915
30 H 0.017 0.983
31 H 0.000 1.000
32 H 0.065 0.935
33 H 0.151 0.849
34 H 0.106 0.894
35 H 0.118 0.882
36 H 0.118 0.882
37 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges -0.535 4.180 16.381 16.914
hybrid contribution 0.070 1.484 0.564 1.590
sum -0.464 5.664 16.945 17.873
Atomic orbital electron populations
1.23496 0.76012 1.05361 1.01983 1.86631 1.23925 1.32791 1.82682
1.24030 0.92422 0.80983 0.69869 1.90577 1.67611 1.37377 1.47916
1.21389 0.86770 0.93898 0.95485 1.22110 1.02566 0.98873 0.92210
1.21350 0.99481 0.96060 0.95795 1.19171 0.94842 0.95249 0.93463
1.22502 1.36555 1.04874 1.01593 0.93325 1.27388 0.94141 1.06898
0.95182 1.70925 1.36239 1.10499 1.39976 0.82964 0.76635 0.71156
0.75628 1.20886 1.19779 1.19129 1.23601 1.05059 0.95098 0.95584
1.23021 0.84399 0.99423 0.89507 0.83798 1.92800 1.53201 1.97691
1.76792 1.23657 0.97586 0.93294 0.96107 1.61663 1.39869 1.16067
1.13415 0.85565 0.91747 0.92763 0.87946 0.91716 0.94220 0.91512
0.98316 1.00008 0.93527 0.84854 0.89353 0.88236 0.88220 0.81730
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.68 10.56 113.37 1.20 1.88 16
2 O -0.35 -11.91 8.99 -51.45 -0.46 -12.38 16
3 C 0.48 16.87 6.10 71.24 0.43 17.31 16
4 O -0.54 -20.99 15.34 21.97 0.34 -20.65 16
5 C 0.12 3.31 0.87 3.12 0.00 3.31 16
6 C -0.12 -3.71 4.06 30.59 0.12 -3.58 16
7 C -0.09 -3.58 4.57 30.60 0.14 -3.44 16
8 C 0.01 0.50 4.28 29.85 0.13 0.63 16
9 C -0.62 -35.41 9.11 25.60 0.23 -35.18 16
10 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16
11 C -0.04 -2.26 5.46 84.65 0.46 -1.80 16
12 N -0.94 -58.29 13.65 21.45 0.29 -58.00 16
13 Si 1.12 50.43 29.90 68.60 2.05 52.48 16
14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
16 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16
17 C -0.16 -3.38 5.77 31.78 0.18 -3.19 16
18 C 0.07 1.33 4.85 31.98 0.16 1.48 16
19 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16
20 F -0.22 -5.99 17.24 44.97 0.78 -5.21 16
21 C 0.02 0.37 7.38 86.77 0.64 1.01 16
22 N -0.68 -16.71 6.65 -464.90 -3.09 -19.80 16
23 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16
24 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16
25 H 0.05 1.53 8.13 -2.38 -0.02 1.51 16
26 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16
27 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16
28 H 0.04 1.72 6.41 -2.39 -0.02 1.70 16
29 H 0.07 2.56 6.69 -2.39 -0.02 2.54 16
30 H 0.00 -0.08 8.01 -2.39 -0.02 -0.09 16
31 H -0.02 -1.02 8.01 -2.39 -0.02 -1.04 16
32 H 0.26 15.96 7.22 -92.71 -0.67 15.29 16
33 H 0.13 2.04 7.85 -2.39 -0.02 2.02 16
34 H 0.09 2.30 6.79 -2.39 -0.02 2.29 16
35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16
36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16
37 H 0.36 8.73 6.74 -89.69 -0.60 8.12 16
Total: -1.00 -74.35 306.68 4.17 -70.18
By element:
Atomic # 1 Polarization: 14.39 SS G_CDS: 0.56 Total: 14.95 kcal
Atomic # 6 Polarization: -25.28 SS G_CDS: 3.70 Total: -21.58 kcal
Atomic # 7 Polarization: -75.00 SS G_CDS: -2.80 Total: -77.80 kcal
Atomic # 8 Polarization: -32.90 SS G_CDS: -0.13 Total: -33.03 kcal
Atomic # 9 Polarization: -5.99 SS G_CDS: 0.78 Total: -5.21 kcal
Atomic # 14 Polarization: 50.43 SS G_CDS: 2.05 Total: 52.48 kcal
Total: -74.35 4.17 -70.18 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000707404462.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -103.041 kcal
(2) G-P(sol) polarization free energy of solvation -74.346 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.387 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.180 kcal
(6) G-S(sol) free energy of system = (1) + (5) -173.221 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds