Wall clock time and date at job start Mon Mar 30 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00043 * 2 1 4 4 O 1.20824 * 119.99870 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99710 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.88000 * 84.29594 * 5 3 2 7 7 C 1.52997 * 109.47131 * 300.41803 * 6 5 3 8 8 C 1.53006 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47184 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.54313 * 110.01968 * 205.41206 * 5 3 2 18 18 C 1.55146 * 103.01791 * 97.19637 * 17 5 3 19 19 H 1.09002 * 110.98750 * 153.74395 * 18 17 5 20 20 F 1.39901 * 111.02295 * 277.54721 * 18 17 5 21 21 C 1.54900 * 101.65305 * 35.65415 * 18 17 5 22 22 N 1.47443 * 109.88520 * 323.26158 * 5 3 2 23 23 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47308 * 300.00511 * 1 2 3 25 25 H 1.09007 * 109.47013 * 60.00222 * 1 2 3 26 26 H 1.09001 * 109.46997 * 180.42229 * 6 5 3 27 27 H 1.09004 * 109.47298 * 60.42086 * 6 5 3 28 28 H 1.09001 * 109.46832 * 60.00325 * 7 6 5 29 29 H 1.09001 * 109.47502 * 299.99847 * 7 6 5 30 30 H 1.08998 * 109.46509 * 60.00429 * 8 7 6 31 31 H 1.08993 * 109.46955 * 299.99989 * 8 7 6 32 32 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 33 33 H 1.08999 * 110.70851 * 215.57757 * 17 5 3 34 34 H 1.09002 * 110.70921 * 338.81620 * 17 5 3 35 35 H 1.09000 * 110.37705 * 204.09937 * 21 18 17 36 36 H 1.09003 * 110.46790 * 81.80726 * 21 18 17 37 37 H 1.00904 * 110.99700 * 117.18423 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0928 1.1595 -1.4325 7 6 3.6484 -0.1756 -2.0333 8 6 4.1754 -0.2912 -3.4651 9 6 3.7382 -1.6064 -4.0566 10 1 3.1435 -2.2912 -3.4702 11 6 4.0965 -1.9351 -5.3468 12 7 4.8202 -1.1010 -6.0611 13 14 3.5539 -3.5651 -6.0803 14 1 4.0655 -3.6774 -7.4699 15 1 2.0705 -3.6336 -6.0915 16 1 4.0948 -4.6805 -5.2626 17 6 4.0257 2.6101 0.6217 18 6 4.3446 2.2204 2.0891 19 1 5.0854 2.8942 2.5198 20 9 3.1814 2.1960 2.8661 21 6 4.9257 0.7951 1.9151 22 7 4.1256 0.1913 0.8283 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 5.1816 1.2097 -1.4244 27 1 3.6957 1.9782 -2.0327 28 1 2.5596 -0.2258 -2.0414 29 1 4.0455 -0.9943 -1.4332 30 1 5.2642 -0.2411 -3.4565 31 1 3.7787 0.5275 -4.0654 32 1 5.1016 -0.2544 -5.6803 33 1 4.9183 2.9826 0.1192 34 1 3.2247 3.3485 0.5844 35 1 4.8089 0.2227 2.8353 36 1 5.9768 0.8441 1.6304 37 1 4.6867 -0.4366 0.2723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707404462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:54 Heat of formation + Delta-G solvation = -173.221427 kcal Electronic energy + Delta-G solvation = -20413.656090 eV Core-core repulsion = 17103.750750 eV Total energy + Delta-G solvation = -3309.905341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.65306 -41.92114 -39.40038 -37.50035 -36.42180 -34.24244 -31.33738 -30.93925 -28.74317 -27.55817 -25.05026 -24.30681 -22.94245 -21.82945 -20.81979 -19.01765 -18.75765 -18.09656 -17.75123 -17.32092 -16.59538 -16.01841 -15.73682 -15.65092 -15.40266 -15.31745 -14.79651 -14.45078 -14.23951 -13.91396 -13.52488 -13.34609 -13.15409 -13.01823 -12.87694 -12.54694 -12.50521 -12.09757 -11.96326 -11.92230 -11.82799 -11.65660 -11.47856 -11.39862 -10.62648 -10.52973 -9.65109 -8.67375 -6.37510 1.10757 1.53167 1.61243 1.78048 1.80702 2.57328 2.80270 3.17015 3.19811 3.40367 3.46117 3.63452 3.83617 4.02056 4.10749 4.18353 4.24174 4.26692 4.37923 4.52482 4.61817 4.62190 4.71206 4.81117 4.87209 4.93518 5.02255 5.05601 5.34736 5.46838 5.51768 5.58116 6.02982 6.19190 6.20925 6.60311 6.71656 7.43646 8.73662 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.027250 B = 0.005248 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.276882 B = 5333.740081 C = 5788.171606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.346 6.346 3 C 0.483 3.517 4 O -0.545 6.545 5 C 0.118 3.882 6 C -0.119 4.119 7 C -0.089 4.089 8 C 0.010 3.990 9 C -0.617 4.617 10 H 0.048 0.952 11 C -0.039 4.039 12 N -0.939 5.939 13 Si 1.115 2.885 14 H -0.283 1.283 15 H -0.272 1.272 16 H -0.266 1.266 17 C -0.155 4.155 18 C 0.073 3.927 19 H 0.145 0.855 20 F -0.224 7.224 21 C 0.022 3.978 22 N -0.675 5.675 23 H 0.126 0.874 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.066 0.934 30 H -0.001 1.001 31 H -0.018 1.018 32 H 0.255 0.745 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 4.963 17.316 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.260 6.260 3 C 0.327 3.673 4 O -0.435 6.435 5 C 0.025 3.975 6 C -0.158 4.158 7 C -0.127 4.127 8 C -0.027 4.027 9 C -0.655 4.655 10 H 0.067 0.933 11 C -0.236 4.236 12 N -0.576 5.576 13 Si 0.936 3.064 14 H -0.209 1.209 15 H -0.198 1.198 16 H -0.191 1.191 17 C -0.193 4.193 18 C 0.036 3.964 19 H 0.162 0.838 20 F -0.205 7.205 21 C -0.106 4.106 22 N -0.310 5.310 23 H 0.144 0.856 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.121 0.879 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.017 0.983 31 H 0.000 1.000 32 H 0.065 0.935 33 H 0.151 0.849 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.535 4.180 16.381 16.914 hybrid contribution 0.070 1.484 0.564 1.590 sum -0.464 5.664 16.945 17.873 Atomic orbital electron populations 1.23496 0.76012 1.05361 1.01983 1.86631 1.23925 1.32791 1.82682 1.24030 0.92422 0.80983 0.69869 1.90577 1.67611 1.37377 1.47916 1.21389 0.86770 0.93898 0.95485 1.22110 1.02566 0.98873 0.92210 1.21350 0.99481 0.96060 0.95795 1.19171 0.94842 0.95249 0.93463 1.22502 1.36555 1.04874 1.01593 0.93325 1.27388 0.94141 1.06898 0.95182 1.70925 1.36239 1.10499 1.39976 0.82964 0.76635 0.71156 0.75628 1.20886 1.19779 1.19129 1.23601 1.05059 0.95098 0.95584 1.23021 0.84399 0.99423 0.89507 0.83798 1.92800 1.53201 1.97691 1.76792 1.23657 0.97586 0.93294 0.96107 1.61663 1.39869 1.16067 1.13415 0.85565 0.91747 0.92763 0.87946 0.91716 0.94220 0.91512 0.98316 1.00008 0.93527 0.84854 0.89353 0.88236 0.88220 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 10.56 113.37 1.20 1.88 16 2 O -0.35 -11.91 8.99 -51.45 -0.46 -12.38 16 3 C 0.48 16.87 6.10 71.24 0.43 17.31 16 4 O -0.54 -20.99 15.34 21.97 0.34 -20.65 16 5 C 0.12 3.31 0.87 3.12 0.00 3.31 16 6 C -0.12 -3.71 4.06 30.59 0.12 -3.58 16 7 C -0.09 -3.58 4.57 30.60 0.14 -3.44 16 8 C 0.01 0.50 4.28 29.85 0.13 0.63 16 9 C -0.62 -35.41 9.11 25.60 0.23 -35.18 16 10 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 11 C -0.04 -2.26 5.46 84.65 0.46 -1.80 16 12 N -0.94 -58.29 13.65 21.45 0.29 -58.00 16 13 Si 1.12 50.43 29.90 68.60 2.05 52.48 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 17 C -0.16 -3.38 5.77 31.78 0.18 -3.19 16 18 C 0.07 1.33 4.85 31.98 0.16 1.48 16 19 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 20 F -0.22 -5.99 17.24 44.97 0.78 -5.21 16 21 C 0.02 0.37 7.38 86.77 0.64 1.01 16 22 N -0.68 -16.71 6.65 -464.90 -3.09 -19.80 16 23 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 24 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 25 H 0.05 1.53 8.13 -2.38 -0.02 1.51 16 26 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.04 1.72 6.41 -2.39 -0.02 1.70 16 29 H 0.07 2.56 6.69 -2.39 -0.02 2.54 16 30 H 0.00 -0.08 8.01 -2.39 -0.02 -0.09 16 31 H -0.02 -1.02 8.01 -2.39 -0.02 -1.04 16 32 H 0.26 15.96 7.22 -92.71 -0.67 15.29 16 33 H 0.13 2.04 7.85 -2.39 -0.02 2.02 16 34 H 0.09 2.30 6.79 -2.39 -0.02 2.29 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.36 8.73 6.74 -89.69 -0.60 8.12 16 Total: -1.00 -74.35 306.68 4.17 -70.18 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.56 Total: 14.95 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 3.70 Total: -21.58 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -2.80 Total: -77.80 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.13 Total: -33.03 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.78 Total: -5.21 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.05 Total: 52.48 kcal Total: -74.35 4.17 -70.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707404462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.041 kcal (2) G-P(sol) polarization free energy of solvation -74.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds