Wall clock time and date at job start Mon Mar 30 2020 04:12:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17398 * 1
3 3 C 1.47202 * 179.97438 * 2 1
4 4 C 1.52995 * 109.47397 * 3.97558 * 3 2 1
5 5 H 1.08996 * 109.47031 * 305.00572 * 4 3 2
6 6 C 1.52991 * 109.47462 * 185.00015 * 4 3 2
7 7 O 1.42902 * 109.47150 * 305.00418 * 6 4 3
8 8 N 1.46900 * 109.46964 * 65.00046 * 4 3 2
9 9 C 1.46906 * 110.99938 * 205.00268 * 8 4 3
10 10 C 1.50704 * 109.46999 * 179.97438 * 9 8 4
11 11 C 1.38639 * 119.74939 * 89.99824 * 10 9 8
12 12 C 1.37620 * 120.24897 * 180.27710 * 11 10 9
13 13 C 1.40715 * 119.74131 * 359.51904 * 12 11 10
14 14 C 1.41399 * 120.24183 * 180.22985 * 13 12 11
15 15 H 1.07996 * 120.00044 * 204.52621 * 14 13 12
16 16 C 1.39950 * 119.99773 * 24.53568 * 14 13 12
17 17 N 1.30821 * 119.99991 * 17.71280 * 16 14 13
18 18 Si 1.86800 * 119.99756 * 197.70913 * 16 14 13
19 19 H 1.48506 * 109.46742 * 59.99979 * 18 16 14
20 20 H 1.48505 * 109.46999 * 179.97438 * 18 16 14
21 21 H 1.48491 * 109.47336 * 300.00007 * 18 16 14
22 22 C 1.40715 * 119.51261 * 0.47567 * 13 12 11
23 23 C 1.37609 * 119.74608 * 359.75586 * 22 13 12
24 24 H 4.44654 * 5.63308 * 180.02562 * 4 1 2
25 25 H 1.09004 * 109.46547 * 243.97288 * 3 2 1
26 26 H 1.08996 * 109.46781 * 123.97811 * 3 2 1
27 27 H 1.08999 * 109.47076 * 64.99694 * 6 4 3
28 28 H 1.08996 * 109.47571 * 185.00471 * 6 4 3
29 29 H 0.96697 * 114.00179 * 180.02562 * 7 6 4
30 30 H 1.00900 * 111.00517 * 81.04840 * 8 4 3
31 31 H 1.08993 * 109.47537 * 59.99882 * 9 8 4
32 32 H 1.09002 * 109.46673 * 299.99281 * 9 8 4
33 33 H 1.08000 * 119.87572 * 359.97438 * 11 10 9
34 34 H 1.07993 * 120.12561 * 179.72165 * 12 11 10
35 35 H 0.97005 * 119.99803 * 180.02562 * 17 16 14
36 36 H 1.08000 * 120.12510 * 179.73128 * 22 13 12
37 37 H 1.08002 * 119.87647 * 179.97438 * 23 22 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1567 -1.4381 -0.1000
5 1 2.7223 -2.0344 0.7023
6 6 4.6814 -1.4479 0.0253
7 8 5.2456 -0.5737 -0.9543
8 7 2.7684 -2.0064 -1.3978
9 6 2.6902 -3.4717 -1.3286
10 6 2.2895 -4.0175 -2.6750
11 6 3.2661 -4.3433 -3.6035
12 6 2.9116 -4.8371 -4.8382
13 6 1.5523 -5.0204 -5.1527
14 6 1.1764 -5.5316 -6.4163
15 1 0.1973 -5.3146 -6.8171
16 6 2.0730 -6.3190 -7.1475
17 7 3.0977 -6.8702 -6.5494
18 14 1.8066 -6.5830 -8.9775
19 1 1.8288 -5.2722 -9.6750
20 1 2.8874 -7.4478 -9.5153
21 1 0.4923 -7.2383 -9.1969
22 6 0.5698 -4.6864 -4.2024
23 6 0.9472 -4.1896 -2.9758
24 1 -1.0498 -0.0004 -0.0002
25 1 3.0090 0.4518 0.9235
26 1 3.0090 0.5751 -0.8522
27 1 4.9663 -1.1094 1.0214
28 1 5.0526 -2.4602 -0.1345
29 1 6.2113 -0.5304 -0.9333
30 1 3.4021 -1.7121 -2.1257
31 1 1.9485 -3.7613 -0.5842
32 1 3.6633 -3.8746 -1.0478
33 1 4.3088 -4.2045 -3.3588
34 1 3.6738 -5.0860 -5.5617
35 1 3.7194 -7.4157 -7.0563
36 1 -0.4765 -4.8190 -4.4349
37 1 0.1948 -3.9321 -2.2450
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000717753965.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:12:59
Heat of formation + Delta-G solvation = 11.925580 kcal
Electronic energy + Delta-G solvation = -18321.622615 eV
Core-core repulsion = 15450.515076 eV
Total energy + Delta-G solvation = -2871.107539 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.131 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-38.46346 -37.40066 -35.40049 -34.00271 -32.99332 -30.87173 -29.27092 -28.90092
-26.54301 -25.86475 -23.08731 -21.02861 -20.75660 -19.84509 -18.16278 -17.34890
-17.24468 -15.54817 -15.39264 -15.07897 -14.71391 -14.23436 -13.86514 -13.70683
-13.29440 -13.15276 -12.70602 -12.31749 -12.09392 -11.88790 -11.60800 -11.45572
-11.34669 -11.01045 -10.92144 -10.52250 -10.37508 -10.22594 -9.86177 -9.83406
-9.50234 -9.34451 -9.08920 -7.96740 -7.39572 -7.24634 -6.73064 -4.31102
2.78763 3.07825 3.10714 3.11742 3.14047 3.16853 3.23062 3.95487
4.09027 4.53874 4.57678 4.82570 5.03228 5.12997 5.26782 5.42542
5.63694 5.73190 5.78075 5.95383 5.97699 6.11926 6.29599 6.34159
6.42738 6.47548 6.98963 7.11235 7.32723 7.41054 7.43210 7.51658
7.66460 7.85620 7.94739 7.95868 8.09886 8.19747 8.35221 8.68279
8.93815 9.02617 10.21559
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.028907 B = 0.004190 C = 0.003881
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 968.384968 B = 6681.320352 C = 7212.660963
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.161 4.161
3 C 0.003 3.997
4 C 0.092 3.908
5 H 0.087 0.913
6 C 0.044 3.956
7 O -0.566 6.566
8 N -0.672 5.672
9 C 0.124 3.876
10 C -0.212 4.212
11 C -0.094 4.094
12 C -0.166 4.166
13 C 0.113 3.887
14 C -0.464 4.464
15 H 0.076 0.924
16 C 0.077 3.923
17 N -0.795 5.795
18 Si 0.907 3.093
19 H -0.264 1.264
20 H -0.279 1.279
21 H -0.266 1.266
22 C -0.229 4.229
23 C -0.068 4.068
24 H 0.211 0.789
25 H 0.080 0.920
26 H 0.093 0.907
27 H 0.047 0.953
28 H 0.048 0.952
29 H 0.378 0.622
30 H 0.350 0.650
31 H 0.059 0.941
32 H 0.017 0.983
33 H 0.082 0.918
34 H 0.116 0.884
35 H 0.280 0.720
36 H 0.090 0.910
37 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.891 8.379 10.551 14.024
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C -0.161 4.161
3 C -0.034 4.034
4 C -0.019 4.019
5 H 0.105 0.895
6 C -0.036 4.036
7 O -0.371 6.371
8 N -0.304 5.304
9 C -0.003 4.003
10 C -0.214 4.214
11 C -0.113 4.113
12 C -0.186 4.186
13 C 0.110 3.890
14 C -0.494 4.494
15 H 0.095 0.905
16 C -0.141 4.141
17 N -0.420 5.420
18 Si 0.732 3.268
19 H -0.188 1.188
20 H -0.204 1.204
21 H -0.190 1.190
22 C -0.248 4.248
23 C -0.086 4.086
24 H 0.228 0.772
25 H 0.098 0.902
26 H 0.111 0.889
27 H 0.065 0.935
28 H 0.067 0.933
29 H 0.225 0.775
30 H 0.170 0.830
31 H 0.078 0.922
32 H 0.035 0.965
33 H 0.100 0.900
34 H 0.134 0.866
35 H 0.091 0.909
36 H 0.108 0.892
37 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 2.791 8.375 10.469 13.694
hybrid contribution 1.300 -0.657 -0.629 1.587
sum 4.091 7.719 9.840 13.158
Atomic orbital electron populations
1.24704 0.95831 1.01498 1.02221 1.22854 0.94252 0.99657 0.99361
1.18618 0.85072 0.97000 1.02676 1.21659 0.90121 0.95513 0.94579
0.89500 1.22977 0.96096 0.93238 0.91274 1.86479 1.25278 1.67332
1.58022 1.60662 1.55829 1.09655 1.04263 1.20593 0.97668 0.85834
0.96222 1.18871 0.93538 1.12851 0.96122 1.20505 0.96072 1.00050
0.94666 1.21263 0.96854 1.04141 0.96299 1.17615 0.91432 0.88108
0.91821 1.19572 1.00853 1.27420 1.01522 0.90540 1.25900 0.94106
0.93637 1.00433 1.69826 1.11847 1.22848 1.37508 0.86388 0.78901
0.79149 0.82389 1.18825 1.20383 1.19029 1.20972 0.97704 1.11438
0.94724 1.20323 0.94197 0.98196 0.95923 0.77239 0.90227 0.88865
0.93522 0.93335 0.77548 0.82977 0.92241 0.96511 0.90020 0.86595
0.90919 0.89158 0.89539
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.23 -3.13 19.25 29.55 0.57 -2.56 16
2 C -0.16 -2.34 13.06 -37.12 -0.48 -2.83 16
3 C 0.00 0.04 5.11 -29.52 -0.15 -0.11 16
4 C 0.09 1.18 2.39 -67.72 -0.16 1.02 16
5 H 0.09 1.09 7.80 -51.93 -0.40 0.68 16
6 C 0.04 0.46 6.72 37.15 0.25 0.71 16
7 O -0.57 -6.05 12.24 -35.23 -0.43 -6.49 16
8 N -0.67 -11.05 5.94 -108.00 -0.64 -11.69 16
9 C 0.12 2.23 5.60 -4.97 -0.03 2.20 16
10 C -0.21 -4.70 5.42 -104.33 -0.56 -5.26 16
11 C -0.09 -2.21 9.67 -39.66 -0.38 -2.60 16
12 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16
13 C 0.11 3.08 5.57 -106.82 -0.60 2.48 16
14 C -0.46 -12.58 9.06 -37.74 -0.34 -12.92 16
15 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16
16 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16
17 N -0.79 -20.80 10.95 55.55 0.61 -20.19 16
18 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16
19 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16
20 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16
21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16
22 C -0.23 -5.81 9.80 -38.88 -0.38 -6.20 16
23 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16
24 H 0.21 2.24 7.80 -54.10 -0.42 1.82 16
25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
26 H 0.09 1.24 7.73 -51.93 -0.40 0.84 16
27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
28 H 0.05 0.53 7.35 -51.93 -0.38 0.15 16
29 H 0.38 2.39 9.12 45.56 0.42 2.81 16
30 H 0.35 6.10 7.93 -39.29 -0.31 5.79 16
31 H 0.06 1.04 7.99 -51.93 -0.42 0.62 16
32 H 0.02 0.28 7.30 -51.93 -0.38 -0.10 16
33 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16
34 H 0.12 3.16 6.16 -52.49 -0.32 2.83 16
35 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16
36 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16
37 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16
LS Contribution 321.03 15.07 4.84 4.84
Total: -1.00 -29.67 321.03 -8.03 -37.70
By element:
Atomic # 1 Polarization: 17.10 SS G_CDS: -4.29 Total: 12.81 kcal
Atomic # 6 Polarization: -27.80 SS G_CDS: -3.08 Total: -30.88 kcal
Atomic # 7 Polarization: -31.84 SS G_CDS: -0.03 Total: -31.88 kcal
Atomic # 8 Polarization: -6.05 SS G_CDS: -0.43 Total: -6.49 kcal
Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal
Total LS contribution 4.84 Total: 4.84 kcal
Total: -29.67 -8.03 -37.70 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000717753965.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.628 kcal
(2) G-P(sol) polarization free energy of solvation -29.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.953 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.926 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds