Wall clock time and date at job start Mon Mar 30 2020 04:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47397 * 3.97558 * 3 2 1 5 5 H 1.08996 * 109.47031 * 305.00572 * 4 3 2 6 6 C 1.52991 * 109.47462 * 185.00015 * 4 3 2 7 7 O 1.42902 * 109.47150 * 305.00418 * 6 4 3 8 8 N 1.46900 * 109.46964 * 65.00046 * 4 3 2 9 9 C 1.46906 * 110.99938 * 205.00268 * 8 4 3 10 10 C 1.50704 * 109.46999 * 179.97438 * 9 8 4 11 11 C 1.38639 * 119.74939 * 89.99824 * 10 9 8 12 12 C 1.37620 * 120.24897 * 180.27710 * 11 10 9 13 13 C 1.40715 * 119.74131 * 359.51904 * 12 11 10 14 14 C 1.41399 * 120.24183 * 180.22985 * 13 12 11 15 15 H 1.07996 * 120.00044 * 204.52621 * 14 13 12 16 16 C 1.39950 * 119.99773 * 24.53568 * 14 13 12 17 17 N 1.30821 * 119.99991 * 17.71280 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 197.70913 * 16 14 13 19 19 H 1.48506 * 109.46742 * 59.99979 * 18 16 14 20 20 H 1.48505 * 109.46999 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47336 * 300.00007 * 18 16 14 22 22 C 1.40715 * 119.51261 * 0.47567 * 13 12 11 23 23 C 1.37609 * 119.74608 * 359.75586 * 22 13 12 24 24 H 4.44654 * 5.63308 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.46547 * 243.97288 * 3 2 1 26 26 H 1.08996 * 109.46781 * 123.97811 * 3 2 1 27 27 H 1.08999 * 109.47076 * 64.99694 * 6 4 3 28 28 H 1.08996 * 109.47571 * 185.00471 * 6 4 3 29 29 H 0.96697 * 114.00179 * 180.02562 * 7 6 4 30 30 H 1.00900 * 111.00517 * 81.04840 * 8 4 3 31 31 H 1.08993 * 109.47537 * 59.99882 * 9 8 4 32 32 H 1.09002 * 109.46673 * 299.99281 * 9 8 4 33 33 H 1.08000 * 119.87572 * 359.97438 * 11 10 9 34 34 H 1.07993 * 120.12561 * 179.72165 * 12 11 10 35 35 H 0.97005 * 119.99803 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.12510 * 179.73128 * 22 13 12 37 37 H 1.08002 * 119.87647 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4381 -0.1000 5 1 2.7223 -2.0344 0.7023 6 6 4.6814 -1.4479 0.0253 7 8 5.2456 -0.5737 -0.9543 8 7 2.7684 -2.0064 -1.3978 9 6 2.6902 -3.4717 -1.3286 10 6 2.2895 -4.0175 -2.6750 11 6 3.2661 -4.3433 -3.6035 12 6 2.9116 -4.8371 -4.8382 13 6 1.5523 -5.0204 -5.1527 14 6 1.1764 -5.5316 -6.4163 15 1 0.1973 -5.3146 -6.8171 16 6 2.0730 -6.3190 -7.1475 17 7 3.0977 -6.8702 -6.5494 18 14 1.8066 -6.5830 -8.9775 19 1 1.8288 -5.2722 -9.6750 20 1 2.8874 -7.4478 -9.5153 21 1 0.4923 -7.2383 -9.1969 22 6 0.5698 -4.6864 -4.2024 23 6 0.9472 -4.1896 -2.9758 24 1 -1.0498 -0.0004 -0.0002 25 1 3.0090 0.4518 0.9235 26 1 3.0090 0.5751 -0.8522 27 1 4.9663 -1.1094 1.0214 28 1 5.0526 -2.4602 -0.1345 29 1 6.2113 -0.5304 -0.9333 30 1 3.4021 -1.7121 -2.1257 31 1 1.9485 -3.7613 -0.5842 32 1 3.6633 -3.8746 -1.0478 33 1 4.3088 -4.2045 -3.3588 34 1 3.6738 -5.0860 -5.5617 35 1 3.7194 -7.4157 -7.0563 36 1 -0.4765 -4.8190 -4.4349 37 1 0.1948 -3.9321 -2.2450 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717753965.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:58 Heat of formation + Delta-G solvation = -7.539554 kcal Electronic energy + Delta-G solvation = -18322.466686 eV Core-core repulsion = 15450.515076 eV Total energy + Delta-G solvation = -2871.951611 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.79651 -38.89945 -36.48634 -35.62625 -34.35826 -32.33624 -31.16022 -30.42966 -27.76300 -27.24149 -24.74393 -22.88433 -21.82349 -21.65490 -19.20838 -19.14015 -18.18692 -17.24200 -16.58069 -16.34496 -16.04093 -15.62993 -15.34165 -15.27492 -14.73817 -14.25469 -14.11468 -13.81982 -13.69396 -13.57238 -13.13438 -12.78236 -12.71885 -12.52502 -12.47591 -12.31216 -12.01302 -11.39921 -11.27544 -11.10868 -10.99455 -10.86402 -10.76563 -9.38502 -9.24592 -9.08631 -8.63096 -6.32456 0.96219 1.17044 1.37558 1.48686 1.53664 2.05202 2.11093 2.21164 2.70187 3.24741 3.62102 3.64072 3.85325 4.15569 4.17908 4.30853 4.35808 4.47123 4.56031 4.62694 4.66537 4.78937 4.86740 4.92861 5.05093 5.13006 5.17203 5.33690 5.38965 5.49211 5.72401 5.97023 6.11333 6.23570 6.29057 6.41266 6.57354 6.71581 6.90655 6.93534 6.95471 7.05589 8.33954 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.004190 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.384968 B = 6681.320352 C = 7212.660963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.189 4.189 3 C 0.006 3.994 4 C 0.090 3.910 5 H 0.093 0.907 6 C 0.050 3.950 7 O -0.585 6.585 8 N -0.684 5.684 9 C 0.133 3.867 10 C -0.200 4.200 11 C -0.096 4.096 12 C -0.190 4.190 13 C 0.079 3.921 14 C -0.505 4.505 15 H 0.072 0.928 16 C 0.037 3.963 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.260 1.260 22 C -0.247 4.247 23 C -0.073 4.073 24 H 0.232 0.768 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.396 0.604 30 H 0.343 0.657 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.288 0.712 36 H 0.092 0.908 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 9.048 11.707 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.189 4.189 3 C -0.031 4.031 4 C -0.020 4.020 5 H 0.111 0.889 6 C -0.029 4.029 7 O -0.393 6.393 8 N -0.315 5.315 9 C 0.005 3.995 10 C -0.201 4.201 11 C -0.115 4.115 12 C -0.209 4.209 13 C 0.077 3.923 14 C -0.535 4.535 15 H 0.091 0.909 16 C -0.178 4.178 17 N -0.452 5.452 18 Si 0.802 3.198 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.184 1.184 22 C -0.266 4.266 23 C -0.092 4.092 24 H 0.249 0.751 25 H 0.126 0.874 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.246 0.754 30 H 0.162 0.838 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.451 9.055 11.654 15.157 hybrid contribution 1.105 -0.777 -0.823 1.582 sum 4.557 8.278 10.831 14.374 Atomic orbital electron populations 1.25460 0.96890 1.01059 1.01877 1.23526 0.95376 1.00149 0.99805 1.18683 0.84026 0.96756 1.03595 1.21749 0.92158 0.95445 0.92622 0.88901 1.22853 0.94093 0.93259 0.92680 1.86435 1.27174 1.67314 1.58375 1.60556 1.56473 1.08420 1.06101 1.20472 0.98575 0.86947 0.93475 1.19341 0.92761 1.10430 0.97565 1.20758 0.97668 0.99152 0.93892 1.21250 0.96318 1.05921 0.97449 1.17958 0.92314 0.89276 0.92730 1.19815 1.01625 1.29340 1.02693 0.90949 1.26739 0.93460 0.92648 1.04962 1.69873 1.12645 1.23281 1.39391 0.85268 0.79258 0.79171 0.76085 1.18622 1.18962 1.18391 1.21166 0.97687 1.12201 0.95565 1.20614 0.95463 0.97594 0.95525 0.75125 0.87426 0.89943 0.90576 0.93679 0.75389 0.83777 0.91407 0.95052 0.87823 0.88246 0.90156 0.88943 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -6.18 19.25 74.32 1.43 -4.74 16 2 C -0.19 -5.15 13.06 31.13 0.41 -4.75 16 3 C 0.01 0.14 5.11 28.79 0.15 0.29 16 4 C 0.09 2.07 2.39 44.91 0.11 2.18 16 5 H 0.09 2.03 7.80 -2.39 -0.02 2.01 16 6 C 0.05 0.89 6.72 71.98 0.48 1.37 16 7 O -0.58 -11.00 12.24 -148.98 -1.82 -12.82 16 8 N -0.68 -21.10 5.94 -495.59 -2.94 -24.04 16 9 C 0.13 4.46 5.60 85.56 0.48 4.94 16 10 C -0.20 -8.62 5.42 -19.67 -0.11 -8.72 16 11 C -0.10 -4.50 9.67 22.22 0.21 -4.28 16 12 C -0.19 -10.31 8.70 22.73 0.20 -10.11 16 13 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 14 C -0.51 -28.41 9.06 23.46 0.21 -28.20 16 15 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 16 C 0.04 1.90 5.14 85.26 0.44 2.34 16 17 N -0.83 -44.22 10.95 21.83 0.24 -43.98 16 18 Si 0.98 39.22 29.59 68.60 2.03 41.25 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.25 -12.81 9.80 22.73 0.22 -12.59 16 23 C -0.07 -3.38 9.67 22.22 0.21 -3.17 16 24 H 0.23 4.52 7.80 -4.43 -0.03 4.49 16 25 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.08 2.06 7.73 -2.39 -0.02 2.04 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 0.83 7.35 -2.39 -0.02 0.82 16 29 H 0.40 3.97 9.12 -74.06 -0.68 3.29 16 30 H 0.34 11.41 7.93 -89.69 -0.71 10.70 16 31 H 0.07 2.18 7.99 -2.39 -0.02 2.16 16 32 H 0.03 0.97 7.30 -2.39 -0.02 0.95 16 33 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 34 H 0.10 5.63 6.16 -2.91 -0.02 5.62 16 35 H 0.29 13.90 8.30 -92.70 -0.77 13.13 16 36 H 0.09 4.60 8.06 -2.91 -0.02 4.57 16 37 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -65.22 321.03 1.52 -63.70 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -0.31 Total: 36.97 kcal Atomic # 6 Polarization: -65.41 SS G_CDS: 4.33 Total: -61.08 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -2.70 Total: -68.02 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.82 Total: -12.82 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -65.22 1.52 -63.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717753965.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.163 kcal (2) G-P(sol) polarization free energy of solvation -65.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds