Wall clock time and date at job start Mon Mar 30 2020 04:12:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17398 * 1
3 3 C 1.47202 * 179.97438 * 2 1
4 4 C 1.52995 * 109.47397 * 3.97558 * 3 2 1
5 5 H 1.08996 * 109.47031 * 305.00572 * 4 3 2
6 6 C 1.52991 * 109.47462 * 185.00015 * 4 3 2
7 7 O 1.42902 * 109.47150 * 305.00418 * 6 4 3
8 8 N 1.46900 * 109.46964 * 65.00046 * 4 3 2
9 9 C 1.46906 * 110.99938 * 205.00268 * 8 4 3
10 10 C 1.50704 * 109.46999 * 179.97438 * 9 8 4
11 11 C 1.38639 * 119.74939 * 89.99824 * 10 9 8
12 12 C 1.37620 * 120.24897 * 180.27710 * 11 10 9
13 13 C 1.40715 * 119.74131 * 359.51904 * 12 11 10
14 14 C 1.41399 * 120.24183 * 180.22985 * 13 12 11
15 15 H 1.07996 * 120.00044 * 204.52621 * 14 13 12
16 16 C 1.39950 * 119.99773 * 24.53568 * 14 13 12
17 17 N 1.30821 * 119.99991 * 17.71280 * 16 14 13
18 18 Si 1.86800 * 119.99756 * 197.70913 * 16 14 13
19 19 H 1.48506 * 109.46742 * 59.99979 * 18 16 14
20 20 H 1.48505 * 109.46999 * 179.97438 * 18 16 14
21 21 H 1.48491 * 109.47336 * 300.00007 * 18 16 14
22 22 C 1.40715 * 119.51261 * 0.47567 * 13 12 11
23 23 C 1.37609 * 119.74608 * 359.75586 * 22 13 12
24 24 H 4.44654 * 5.63308 * 180.02562 * 4 1 2
25 25 H 1.09004 * 109.46547 * 243.97288 * 3 2 1
26 26 H 1.08996 * 109.46781 * 123.97811 * 3 2 1
27 27 H 1.08999 * 109.47076 * 64.99694 * 6 4 3
28 28 H 1.08996 * 109.47571 * 185.00471 * 6 4 3
29 29 H 0.96697 * 114.00179 * 180.02562 * 7 6 4
30 30 H 1.00900 * 111.00517 * 81.04840 * 8 4 3
31 31 H 1.08993 * 109.47537 * 59.99882 * 9 8 4
32 32 H 1.09002 * 109.46673 * 299.99281 * 9 8 4
33 33 H 1.08000 * 119.87572 * 359.97438 * 11 10 9
34 34 H 1.07993 * 120.12561 * 179.72165 * 12 11 10
35 35 H 0.97005 * 119.99803 * 180.02562 * 17 16 14
36 36 H 1.08000 * 120.12510 * 179.73128 * 22 13 12
37 37 H 1.08002 * 119.87647 * 179.97438 * 23 22 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1567 -1.4381 -0.1000
5 1 2.7223 -2.0344 0.7023
6 6 4.6814 -1.4479 0.0253
7 8 5.2456 -0.5737 -0.9543
8 7 2.7684 -2.0064 -1.3978
9 6 2.6902 -3.4717 -1.3286
10 6 2.2895 -4.0175 -2.6750
11 6 3.2661 -4.3433 -3.6035
12 6 2.9116 -4.8371 -4.8382
13 6 1.5523 -5.0204 -5.1527
14 6 1.1764 -5.5316 -6.4163
15 1 0.1973 -5.3146 -6.8171
16 6 2.0730 -6.3190 -7.1475
17 7 3.0977 -6.8702 -6.5494
18 14 1.8066 -6.5830 -8.9775
19 1 1.8288 -5.2722 -9.6750
20 1 2.8874 -7.4478 -9.5153
21 1 0.4923 -7.2383 -9.1969
22 6 0.5698 -4.6864 -4.2024
23 6 0.9472 -4.1896 -2.9758
24 1 -1.0498 -0.0004 -0.0002
25 1 3.0090 0.4518 0.9235
26 1 3.0090 0.5751 -0.8522
27 1 4.9663 -1.1094 1.0214
28 1 5.0526 -2.4602 -0.1345
29 1 6.2113 -0.5304 -0.9333
30 1 3.4021 -1.7121 -2.1257
31 1 1.9485 -3.7613 -0.5842
32 1 3.6633 -3.8746 -1.0478
33 1 4.3088 -4.2045 -3.3588
34 1 3.6738 -5.0860 -5.5617
35 1 3.7194 -7.4157 -7.0563
36 1 -0.4765 -4.8190 -4.4349
37 1 0.1948 -3.9321 -2.2450
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000717753965.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:12:58
Heat of formation + Delta-G solvation = -7.539554 kcal
Electronic energy + Delta-G solvation = -18322.466686 eV
Core-core repulsion = 15450.515076 eV
Total energy + Delta-G solvation = -2871.951611 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.131 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.79651 -38.89945 -36.48634 -35.62625 -34.35826 -32.33624 -31.16022 -30.42966
-27.76300 -27.24149 -24.74393 -22.88433 -21.82349 -21.65490 -19.20838 -19.14015
-18.18692 -17.24200 -16.58069 -16.34496 -16.04093 -15.62993 -15.34165 -15.27492
-14.73817 -14.25469 -14.11468 -13.81982 -13.69396 -13.57238 -13.13438 -12.78236
-12.71885 -12.52502 -12.47591 -12.31216 -12.01302 -11.39921 -11.27544 -11.10868
-10.99455 -10.86402 -10.76563 -9.38502 -9.24592 -9.08631 -8.63096 -6.32456
0.96219 1.17044 1.37558 1.48686 1.53664 2.05202 2.11093 2.21164
2.70187 3.24741 3.62102 3.64072 3.85325 4.15569 4.17908 4.30853
4.35808 4.47123 4.56031 4.62694 4.66537 4.78937 4.86740 4.92861
5.05093 5.13006 5.17203 5.33690 5.38965 5.49211 5.72401 5.97023
6.11333 6.23570 6.29057 6.41266 6.57354 6.71581 6.90655 6.93534
6.95471 7.05589 8.33954
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.028907 B = 0.004190 C = 0.003881
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 968.384968 B = 6681.320352 C = 7212.660963
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C -0.189 4.189
3 C 0.006 3.994
4 C 0.090 3.910
5 H 0.093 0.907
6 C 0.050 3.950
7 O -0.585 6.585
8 N -0.684 5.684
9 C 0.133 3.867
10 C -0.200 4.200
11 C -0.096 4.096
12 C -0.190 4.190
13 C 0.079 3.921
14 C -0.505 4.505
15 H 0.072 0.928
16 C 0.037 3.963
17 N -0.826 5.826
18 Si 0.982 3.018
19 H -0.262 1.262
20 H -0.265 1.265
21 H -0.260 1.260
22 C -0.247 4.247
23 C -0.073 4.073
24 H 0.232 0.768
25 H 0.108 0.892
26 H 0.082 0.918
27 H 0.076 0.924
28 H 0.045 0.955
29 H 0.396 0.604
30 H 0.343 0.657
31 H 0.068 0.932
32 H 0.031 0.969
33 H 0.104 0.896
34 H 0.100 0.900
35 H 0.288 0.712
36 H 0.092 0.908
37 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.537 9.048 11.707 15.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.253 4.253
2 C -0.189 4.189
3 C -0.031 4.031
4 C -0.020 4.020
5 H 0.111 0.889
6 C -0.029 4.029
7 O -0.393 6.393
8 N -0.315 5.315
9 C 0.005 3.995
10 C -0.201 4.201
11 C -0.115 4.115
12 C -0.209 4.209
13 C 0.077 3.923
14 C -0.535 4.535
15 H 0.091 0.909
16 C -0.178 4.178
17 N -0.452 5.452
18 Si 0.802 3.198
19 H -0.186 1.186
20 H -0.190 1.190
21 H -0.184 1.184
22 C -0.266 4.266
23 C -0.092 4.092
24 H 0.249 0.751
25 H 0.126 0.874
26 H 0.101 0.899
27 H 0.094 0.906
28 H 0.063 0.937
29 H 0.246 0.754
30 H 0.162 0.838
31 H 0.086 0.914
32 H 0.049 0.951
33 H 0.122 0.878
34 H 0.118 0.882
35 H 0.098 0.902
36 H 0.111 0.889
37 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 3.451 9.055 11.654 15.157
hybrid contribution 1.105 -0.777 -0.823 1.582
sum 4.557 8.278 10.831 14.374
Atomic orbital electron populations
1.25460 0.96890 1.01059 1.01877 1.23526 0.95376 1.00149 0.99805
1.18683 0.84026 0.96756 1.03595 1.21749 0.92158 0.95445 0.92622
0.88901 1.22853 0.94093 0.93259 0.92680 1.86435 1.27174 1.67314
1.58375 1.60556 1.56473 1.08420 1.06101 1.20472 0.98575 0.86947
0.93475 1.19341 0.92761 1.10430 0.97565 1.20758 0.97668 0.99152
0.93892 1.21250 0.96318 1.05921 0.97449 1.17958 0.92314 0.89276
0.92730 1.19815 1.01625 1.29340 1.02693 0.90949 1.26739 0.93460
0.92648 1.04962 1.69873 1.12645 1.23281 1.39391 0.85268 0.79258
0.79171 0.76085 1.18622 1.18962 1.18391 1.21166 0.97687 1.12201
0.95565 1.20614 0.95463 0.97594 0.95525 0.75125 0.87426 0.89943
0.90576 0.93679 0.75389 0.83777 0.91407 0.95052 0.87823 0.88246
0.90156 0.88943 0.87403
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.24 -6.18 19.25 74.32 1.43 -4.74 16
2 C -0.19 -5.15 13.06 31.13 0.41 -4.75 16
3 C 0.01 0.14 5.11 28.79 0.15 0.29 16
4 C 0.09 2.07 2.39 44.91 0.11 2.18 16
5 H 0.09 2.03 7.80 -2.39 -0.02 2.01 16
6 C 0.05 0.89 6.72 71.98 0.48 1.37 16
7 O -0.58 -11.00 12.24 -148.98 -1.82 -12.82 16
8 N -0.68 -21.10 5.94 -495.59 -2.94 -24.04 16
9 C 0.13 4.46 5.60 85.56 0.48 4.94 16
10 C -0.20 -8.62 5.42 -19.67 -0.11 -8.72 16
11 C -0.10 -4.50 9.67 22.22 0.21 -4.28 16
12 C -0.19 -10.31 8.70 22.73 0.20 -10.11 16
13 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16
14 C -0.51 -28.41 9.06 23.46 0.21 -28.20 16
15 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16
16 C 0.04 1.90 5.14 85.26 0.44 2.34 16
17 N -0.83 -44.22 10.95 21.83 0.24 -43.98 16
18 Si 0.98 39.22 29.59 68.60 2.03 41.25 16
19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16
20 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16
21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16
22 C -0.25 -12.81 9.80 22.73 0.22 -12.59 16
23 C -0.07 -3.38 9.67 22.22 0.21 -3.17 16
24 H 0.23 4.52 7.80 -4.43 -0.03 4.49 16
25 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16
26 H 0.08 2.06 7.73 -2.39 -0.02 2.04 16
27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16
28 H 0.04 0.83 7.35 -2.39 -0.02 0.82 16
29 H 0.40 3.97 9.12 -74.06 -0.68 3.29 16
30 H 0.34 11.41 7.93 -89.69 -0.71 10.70 16
31 H 0.07 2.18 7.99 -2.39 -0.02 2.16 16
32 H 0.03 0.97 7.30 -2.39 -0.02 0.95 16
33 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16
34 H 0.10 5.63 6.16 -2.91 -0.02 5.62 16
35 H 0.29 13.90 8.30 -92.70 -0.77 13.13 16
36 H 0.09 4.60 8.06 -2.91 -0.02 4.57 16
37 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16
Total: -1.00 -65.22 321.03 1.52 -63.70
By element:
Atomic # 1 Polarization: 37.28 SS G_CDS: -0.31 Total: 36.97 kcal
Atomic # 6 Polarization: -65.41 SS G_CDS: 4.33 Total: -61.08 kcal
Atomic # 7 Polarization: -65.32 SS G_CDS: -2.70 Total: -68.02 kcal
Atomic # 8 Polarization: -11.00 SS G_CDS: -1.82 Total: -12.82 kcal
Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal
Total: -65.22 1.52 -63.70 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000717753965.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.163 kcal
(2) G-P(sol) polarization free energy of solvation -65.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.061 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.540 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds