Wall clock time and date at job start Mon Mar 30 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47366 * 337.90982 * 3 2 1 5 5 H 1.09004 * 109.46829 * 55.00003 * 4 3 2 6 6 C 1.53000 * 109.47255 * 175.00127 * 4 3 2 7 7 O 1.42902 * 109.46925 * 54.99953 * 6 4 3 8 8 N 1.46897 * 109.47288 * 295.00108 * 4 3 2 9 9 C 1.46899 * 111.00373 * 154.99777 * 8 4 3 10 10 H 1.09004 * 109.46746 * 34.99998 * 9 8 4 11 11 C 1.50702 * 109.47020 * 275.00318 * 9 8 4 12 12 H 1.07994 * 120.00225 * 305.06941 * 11 9 8 13 13 C 1.37882 * 120.00067 * 125.07008 * 11 9 8 14 14 N 1.31510 * 120.00398 * 172.92289 * 13 11 9 15 15 Si 1.86801 * 119.99906 * 352.91891 * 13 11 9 16 16 H 1.48498 * 109.47295 * 85.60553 * 15 13 11 17 17 H 1.48500 * 109.47442 * 205.61113 * 15 13 11 18 18 H 1.48506 * 109.47086 * 325.60913 * 15 13 11 19 19 C 1.50693 * 109.47222 * 155.00120 * 9 8 4 20 20 C 1.38236 * 120.00264 * 45.79046 * 19 9 8 21 21 C 1.38230 * 120.00149 * 179.78837 * 20 19 9 22 22 C 1.38236 * 119.99849 * 0.43596 * 21 20 19 23 23 C 1.38233 * 120.00234 * 359.81857 * 22 21 20 24 24 C 1.38235 * 119.99617 * 226.05910 * 19 9 8 25 25 H 4.44647 * 5.63292 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.46862 * 217.91421 * 3 2 1 27 27 H 1.09001 * 109.47092 * 97.91296 * 3 2 1 28 28 H 1.08998 * 109.47231 * 175.00470 * 6 4 3 29 29 H 1.09000 * 109.46822 * 295.00318 * 6 4 3 30 30 H 0.96706 * 113.99624 * 179.97438 * 7 6 4 31 31 H 1.00904 * 111.00000 * 278.95554 * 8 4 3 32 32 H 0.96995 * 120.00404 * 179.97438 * 14 13 11 33 33 H 1.08002 * 119.99549 * 359.97438 * 20 19 9 34 34 H 1.07998 * 120.00459 * 180.27023 * 21 20 19 35 35 H 1.08003 * 120.00132 * 179.83161 * 22 21 20 36 36 H 1.07997 * 120.00243 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.00263 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.3357 0.5425 5 1 2.7224 -2.1520 -0.0349 6 6 4.6815 -1.3840 0.4267 7 8 5.2454 -0.2485 1.0860 8 7 2.7682 -1.4725 1.9525 9 6 2.6900 -2.8866 2.3424 10 1 3.4598 -3.4515 1.8166 11 6 1.3323 -3.4326 1.9824 12 1 0.4402 -2.9440 2.3452 13 6 1.2290 -4.5561 1.1897 14 7 0.0550 -5.1140 0.9895 15 14 2.7566 -5.2856 0.3999 16 1 3.4147 -6.2110 1.3568 17 1 2.3724 -6.0314 -0.8253 18 1 3.6973 -4.1941 0.0404 19 6 2.9031 -3.0104 3.8290 20 6 2.2453 -2.1571 4.6951 21 6 2.4374 -2.2735 6.0590 22 6 3.2945 -3.2374 6.5564 23 6 3.9564 -4.0872 5.6902 24 6 3.7609 -3.9736 4.3263 25 1 -1.0497 -0.0003 0.0003 26 1 3.0089 0.8116 0.6315 27 1 3.0093 0.1423 -1.0179 28 1 5.0527 -2.2965 0.8932 29 1 4.9665 -1.3719 -0.6253 30 1 6.2113 -0.2139 1.0528 31 1 3.4018 -0.9664 2.5529 32 1 -0.0177 -5.9041 0.4316 33 1 1.5788 -1.4015 4.3061 34 1 1.9201 -1.6098 6.7359 35 1 3.4468 -3.3266 7.6219 36 1 4.6263 -4.8399 6.0788 37 1 4.2779 -4.6377 3.6495 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717786055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:40 Heat of formation + Delta-G solvation = 29.869173 kcal Electronic energy + Delta-G solvation = -19414.428734 eV Core-core repulsion = 16544.099287 eV Total energy + Delta-G solvation = -2870.329447 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.81942 -37.65080 -35.24002 -33.57629 -32.09552 -30.94999 -30.21336 -28.56925 -26.39658 -26.01797 -22.72426 -21.89789 -20.36976 -19.75355 -17.81551 -17.01512 -16.90197 -16.19471 -15.12070 -14.80279 -14.39622 -14.34946 -14.17556 -13.55691 -13.35644 -12.85347 -12.81318 -12.70966 -12.30352 -12.10528 -11.68735 -11.37737 -11.32779 -10.95556 -10.61669 -10.41378 -10.12928 -9.96984 -9.77926 -9.53728 -9.34816 -9.30187 -8.64799 -8.24264 -7.91445 -7.29599 -6.14115 -4.09568 2.07355 2.12141 3.15305 3.20106 3.26428 3.65450 3.67968 4.29960 4.40383 4.53079 5.05130 5.11411 5.22016 5.42768 5.50891 5.52570 5.56744 5.68256 5.73236 5.96180 6.02794 6.12369 6.17110 6.27591 6.30168 6.50766 6.64809 6.70945 6.78558 6.81317 7.11478 7.17644 7.44184 7.52371 7.72049 7.74651 7.99115 8.34292 8.49595 8.68613 9.01734 9.48093 10.99099 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.009450 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.115670 B = 2962.338871 C = 3638.718352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.157 4.157 3 C 0.009 3.991 4 C 0.101 3.899 5 H 0.097 0.903 6 C 0.043 3.957 7 O -0.566 6.566 8 N -0.664 5.664 9 C 0.212 3.788 10 H 0.016 0.984 11 C -0.473 4.473 12 H 0.082 0.918 13 C 0.073 3.927 14 N -0.889 5.889 15 Si 0.865 3.135 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.267 1.267 19 C -0.041 4.041 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.147 4.147 23 C -0.124 4.124 24 C -0.132 4.132 25 H 0.207 0.793 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.372 0.628 31 H 0.324 0.676 32 H 0.264 0.736 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.741 6.557 1.746 11.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.157 4.157 3 C -0.029 4.029 4 C -0.010 4.010 5 H 0.115 0.885 6 C -0.037 4.037 7 O -0.371 6.371 8 N -0.294 5.294 9 C 0.105 3.895 10 H 0.034 0.966 11 C -0.511 4.511 12 H 0.100 0.900 13 C -0.130 4.130 14 N -0.527 5.527 15 Si 0.693 3.307 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.193 1.193 19 C -0.042 4.042 20 C -0.117 4.117 21 C -0.144 4.144 22 C -0.165 4.165 23 C -0.143 4.143 24 C -0.151 4.151 25 H 0.224 0.776 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.218 0.782 31 H 0.142 0.858 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.317 6.566 1.627 10.720 hybrid contribution 2.031 -1.215 -0.542 2.428 sum 10.347 5.351 1.085 11.700 Atomic orbital electron populations 1.24552 0.95688 1.01402 1.02202 1.22673 0.94070 0.99792 0.99204 1.18554 0.85390 0.98603 1.00305 1.21531 0.88669 0.97673 0.93152 0.88491 1.23098 0.97072 0.87925 0.95599 1.86482 1.24661 1.46484 1.79454 1.60945 1.53996 1.13634 1.00864 1.18783 0.97330 0.86059 0.87285 0.96645 1.20824 0.91043 1.09499 1.29773 0.90020 1.25076 0.95405 0.96340 0.96199 1.69877 1.23210 1.21057 1.38542 0.87090 0.84326 0.79512 0.79779 1.20163 1.21340 1.19278 1.20503 0.92451 0.93462 0.97816 1.21005 0.98975 0.99530 0.92226 1.21078 0.98985 0.98741 0.95634 1.20876 0.99437 0.97584 0.98621 1.20927 1.00445 0.99337 0.93549 1.20972 0.99828 0.99269 0.95025 0.77619 0.89559 0.90906 0.93724 0.93859 0.78249 0.85761 0.92566 0.85671 0.87100 0.87348 0.87281 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.21 19.25 29.55 0.57 -3.64 16 2 C -0.16 -3.06 13.06 -37.12 -0.48 -3.54 16 3 C 0.01 0.15 5.11 -29.52 -0.15 0.00 16 4 C 0.10 1.88 2.19 -67.71 -0.15 1.73 16 5 H 0.10 2.09 6.62 -51.93 -0.34 1.75 16 6 C 0.04 0.65 6.69 37.16 0.25 0.90 16 7 O -0.57 -7.66 12.24 -35.23 -0.43 -8.09 16 8 N -0.66 -13.53 5.29 -102.18 -0.54 -14.07 16 9 C 0.21 4.82 1.98 -70.02 -0.14 4.68 16 10 H 0.02 0.36 3.43 -51.93 -0.18 0.19 16 11 C -0.47 -12.87 8.75 -34.44 -0.30 -13.17 16 12 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 15 Si 0.86 20.63 26.50 -169.99 -4.51 16.12 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -5.87 6.22 56.52 0.35 -5.52 16 19 C -0.04 -0.87 4.65 -104.63 -0.49 -1.36 16 20 C -0.10 -1.97 9.08 -39.58 -0.36 -2.33 16 21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.15 -2.40 10.05 -39.58 -0.40 -2.80 16 23 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 24 C -0.13 -2.61 9.67 -39.58 -0.38 -2.99 16 25 H 0.21 3.30 7.80 -54.11 -0.42 2.87 16 26 H 0.09 1.41 7.73 -51.93 -0.40 1.01 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.73 7.38 -51.93 -0.38 0.34 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.37 3.26 9.12 45.56 0.42 3.68 16 31 H 0.32 6.26 7.35 -39.29 -0.29 5.98 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 33 H 0.13 2.54 7.90 -52.49 -0.41 2.13 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 2.06 7.99 -52.49 -0.42 1.64 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -30.97 316.60 -7.01 -37.99 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -4.16 Total: 14.83 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -2.93 Total: -25.71 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.23 Total: -39.91 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.43 Total: -8.09 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.51 Total: 16.12 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.97 -7.01 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717786055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.855 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds