Wall clock time and date at job start Mon Mar 30 2020 04:13:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17403 * 1
3 3 C 1.47198 * 179.97438 * 2 1
4 4 C 1.53004 * 109.47366 * 337.90982 * 3 2 1
5 5 H 1.09004 * 109.46829 * 55.00003 * 4 3 2
6 6 C 1.53000 * 109.47255 * 175.00127 * 4 3 2
7 7 O 1.42902 * 109.46925 * 54.99953 * 6 4 3
8 8 N 1.46897 * 109.47288 * 295.00108 * 4 3 2
9 9 C 1.46899 * 111.00373 * 154.99777 * 8 4 3
10 10 H 1.09004 * 109.46746 * 34.99998 * 9 8 4
11 11 C 1.50702 * 109.47020 * 275.00318 * 9 8 4
12 12 H 1.07994 * 120.00225 * 305.06941 * 11 9 8
13 13 C 1.37882 * 120.00067 * 125.07008 * 11 9 8
14 14 N 1.31510 * 120.00398 * 172.92289 * 13 11 9
15 15 Si 1.86801 * 119.99906 * 352.91891 * 13 11 9
16 16 H 1.48498 * 109.47295 * 85.60553 * 15 13 11
17 17 H 1.48500 * 109.47442 * 205.61113 * 15 13 11
18 18 H 1.48506 * 109.47086 * 325.60913 * 15 13 11
19 19 C 1.50693 * 109.47222 * 155.00120 * 9 8 4
20 20 C 1.38236 * 120.00264 * 45.79046 * 19 9 8
21 21 C 1.38230 * 120.00149 * 179.78837 * 20 19 9
22 22 C 1.38236 * 119.99849 * 0.43596 * 21 20 19
23 23 C 1.38233 * 120.00234 * 359.81857 * 22 21 20
24 24 C 1.38235 * 119.99617 * 226.05910 * 19 9 8
25 25 H 4.44647 * 5.63292 * 179.97438 * 4 1 2
26 26 H 1.09000 * 109.46862 * 217.91421 * 3 2 1
27 27 H 1.09001 * 109.47092 * 97.91296 * 3 2 1
28 28 H 1.08998 * 109.47231 * 175.00470 * 6 4 3
29 29 H 1.09000 * 109.46822 * 295.00318 * 6 4 3
30 30 H 0.96706 * 113.99624 * 179.97438 * 7 6 4
31 31 H 1.00904 * 111.00000 * 278.95554 * 8 4 3
32 32 H 0.96995 * 120.00404 * 179.97438 * 14 13 11
33 33 H 1.08002 * 119.99549 * 359.97438 * 20 19 9
34 34 H 1.07998 * 120.00459 * 180.27023 * 21 20 19
35 35 H 1.08003 * 120.00132 * 179.83161 * 22 21 20
36 36 H 1.07997 * 120.00243 * 179.97438 * 23 22 21
37 37 H 1.08001 * 120.00263 * 359.97438 * 24 19 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1567 -1.3357 0.5425
5 1 2.7224 -2.1520 -0.0349
6 6 4.6815 -1.3840 0.4267
7 8 5.2454 -0.2485 1.0860
8 7 2.7682 -1.4725 1.9525
9 6 2.6900 -2.8866 2.3424
10 1 3.4598 -3.4515 1.8166
11 6 1.3323 -3.4326 1.9824
12 1 0.4402 -2.9440 2.3452
13 6 1.2290 -4.5561 1.1897
14 7 0.0550 -5.1140 0.9895
15 14 2.7566 -5.2856 0.3999
16 1 3.4147 -6.2110 1.3568
17 1 2.3724 -6.0314 -0.8253
18 1 3.6973 -4.1941 0.0404
19 6 2.9031 -3.0104 3.8290
20 6 2.2453 -2.1571 4.6951
21 6 2.4374 -2.2735 6.0590
22 6 3.2945 -3.2374 6.5564
23 6 3.9564 -4.0872 5.6902
24 6 3.7609 -3.9736 4.3263
25 1 -1.0497 -0.0003 0.0003
26 1 3.0089 0.8116 0.6315
27 1 3.0093 0.1423 -1.0179
28 1 5.0527 -2.2965 0.8932
29 1 4.9665 -1.3719 -0.6253
30 1 6.2113 -0.2139 1.0528
31 1 3.4018 -0.9664 2.5529
32 1 -0.0177 -5.9041 0.4316
33 1 1.5788 -1.4015 4.3061
34 1 1.9201 -1.6098 6.7359
35 1 3.4468 -3.3266 7.6219
36 1 4.6263 -4.8399 6.0788
37 1 4.2779 -4.6377 3.6495
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000717786055.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:40
Heat of formation + Delta-G solvation = 29.869173 kcal
Electronic energy + Delta-G solvation = -19414.428734 eV
Core-core repulsion = 16544.099287 eV
Total energy + Delta-G solvation = -2870.329447 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.131 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-38.81942 -37.65080 -35.24002 -33.57629 -32.09552 -30.94999 -30.21336 -28.56925
-26.39658 -26.01797 -22.72426 -21.89789 -20.36976 -19.75355 -17.81551 -17.01512
-16.90197 -16.19471 -15.12070 -14.80279 -14.39622 -14.34946 -14.17556 -13.55691
-13.35644 -12.85347 -12.81318 -12.70966 -12.30352 -12.10528 -11.68735 -11.37737
-11.32779 -10.95556 -10.61669 -10.41378 -10.12928 -9.96984 -9.77926 -9.53728
-9.34816 -9.30187 -8.64799 -8.24264 -7.91445 -7.29599 -6.14115 -4.09568
2.07355 2.12141 3.15305 3.20106 3.26428 3.65450 3.67968 4.29960
4.40383 4.53079 5.05130 5.11411 5.22016 5.42768 5.50891 5.52570
5.56744 5.68256 5.73236 5.96180 6.02794 6.12369 6.17110 6.27591
6.30168 6.50766 6.64809 6.70945 6.78558 6.81317 7.11478 7.17644
7.44184 7.52371 7.72049 7.74651 7.99115 8.34292 8.49595 8.68613
9.01734 9.48093 10.99099
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.013273 B = 0.009450 C = 0.007693
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2109.115670 B = 2962.338871 C = 3638.718352
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.157 4.157
3 C 0.009 3.991
4 C 0.101 3.899
5 H 0.097 0.903
6 C 0.043 3.957
7 O -0.566 6.566
8 N -0.664 5.664
9 C 0.212 3.788
10 H 0.016 0.984
11 C -0.473 4.473
12 H 0.082 0.918
13 C 0.073 3.927
14 N -0.889 5.889
15 Si 0.865 3.135
16 H -0.276 1.276
17 H -0.287 1.287
18 H -0.267 1.267
19 C -0.041 4.041
20 C -0.099 4.099
21 C -0.126 4.126
22 C -0.147 4.147
23 C -0.124 4.124
24 C -0.132 4.132
25 H 0.207 0.793
26 H 0.086 0.914
27 H 0.073 0.927
28 H 0.045 0.955
29 H 0.043 0.957
30 H 0.372 0.628
31 H 0.324 0.676
32 H 0.264 0.736
33 H 0.125 0.875
34 H 0.111 0.889
35 H 0.108 0.892
36 H 0.109 0.891
37 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.741 6.557 1.746 11.871
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.157 4.157
3 C -0.029 4.029
4 C -0.010 4.010
5 H 0.115 0.885
6 C -0.037 4.037
7 O -0.371 6.371
8 N -0.294 5.294
9 C 0.105 3.895
10 H 0.034 0.966
11 C -0.511 4.511
12 H 0.100 0.900
13 C -0.130 4.130
14 N -0.527 5.527
15 Si 0.693 3.307
16 H -0.202 1.202
17 H -0.213 1.213
18 H -0.193 1.193
19 C -0.042 4.042
20 C -0.117 4.117
21 C -0.144 4.144
22 C -0.165 4.165
23 C -0.143 4.143
24 C -0.151 4.151
25 H 0.224 0.776
26 H 0.104 0.896
27 H 0.091 0.909
28 H 0.063 0.937
29 H 0.061 0.939
30 H 0.218 0.782
31 H 0.142 0.858
32 H 0.074 0.926
33 H 0.143 0.857
34 H 0.129 0.871
35 H 0.127 0.873
36 H 0.127 0.873
37 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 8.317 6.566 1.627 10.720
hybrid contribution 2.031 -1.215 -0.542 2.428
sum 10.347 5.351 1.085 11.700
Atomic orbital electron populations
1.24552 0.95688 1.01402 1.02202 1.22673 0.94070 0.99792 0.99204
1.18554 0.85390 0.98603 1.00305 1.21531 0.88669 0.97673 0.93152
0.88491 1.23098 0.97072 0.87925 0.95599 1.86482 1.24661 1.46484
1.79454 1.60945 1.53996 1.13634 1.00864 1.18783 0.97330 0.86059
0.87285 0.96645 1.20824 0.91043 1.09499 1.29773 0.90020 1.25076
0.95405 0.96340 0.96199 1.69877 1.23210 1.21057 1.38542 0.87090
0.84326 0.79512 0.79779 1.20163 1.21340 1.19278 1.20503 0.92451
0.93462 0.97816 1.21005 0.98975 0.99530 0.92226 1.21078 0.98985
0.98741 0.95634 1.20876 0.99437 0.97584 0.98621 1.20927 1.00445
0.99337 0.93549 1.20972 0.99828 0.99269 0.95025 0.77619 0.89559
0.90906 0.93724 0.93859 0.78249 0.85761 0.92566 0.85671 0.87100
0.87348 0.87281 0.87461
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.22 -4.21 19.25 29.55 0.57 -3.64 16
2 C -0.16 -3.06 13.06 -37.12 -0.48 -3.54 16
3 C 0.01 0.15 5.11 -29.52 -0.15 0.00 16
4 C 0.10 1.88 2.19 -67.71 -0.15 1.73 16
5 H 0.10 2.09 6.62 -51.93 -0.34 1.75 16
6 C 0.04 0.65 6.69 37.16 0.25 0.90 16
7 O -0.57 -7.66 12.24 -35.23 -0.43 -8.09 16
8 N -0.66 -13.53 5.29 -102.18 -0.54 -14.07 16
9 C 0.21 4.82 1.98 -70.02 -0.14 4.68 16
10 H 0.02 0.36 3.43 -51.93 -0.18 0.19 16
11 C -0.47 -12.87 8.75 -34.44 -0.30 -13.17 16
12 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16
13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16
14 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16
15 Si 0.86 20.63 26.50 -169.99 -4.51 16.12 16
16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
18 H -0.27 -5.87 6.22 56.52 0.35 -5.52 16
19 C -0.04 -0.87 4.65 -104.63 -0.49 -1.36 16
20 C -0.10 -1.97 9.08 -39.58 -0.36 -2.33 16
21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16
22 C -0.15 -2.40 10.05 -39.58 -0.40 -2.80 16
23 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16
24 C -0.13 -2.61 9.67 -39.58 -0.38 -2.99 16
25 H 0.21 3.30 7.80 -54.11 -0.42 2.87 16
26 H 0.09 1.41 7.73 -51.93 -0.40 1.01 16
27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
28 H 0.04 0.73 7.38 -51.93 -0.38 0.34 16
29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.37 3.26 9.12 45.56 0.42 3.68 16
31 H 0.32 6.26 7.35 -39.29 -0.29 5.98 16
32 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16
33 H 0.13 2.54 7.90 -52.49 -0.41 2.13 16
34 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16
35 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16
36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16
37 H 0.11 2.06 7.99 -52.49 -0.42 1.64 16
LS Contribution 316.60 15.07 4.77 4.77
Total: -1.00 -30.97 316.60 -7.01 -37.99
By element:
Atomic # 1 Polarization: 18.99 SS G_CDS: -4.16 Total: 14.83 kcal
Atomic # 6 Polarization: -22.78 SS G_CDS: -2.93 Total: -25.71 kcal
Atomic # 7 Polarization: -40.15 SS G_CDS: 0.23 Total: -39.91 kcal
Atomic # 8 Polarization: -7.66 SS G_CDS: -0.43 Total: -8.09 kcal
Atomic # 14 Polarization: 20.63 SS G_CDS: -4.51 Total: 16.12 kcal
Total LS contribution 4.77 Total: 4.77 kcal
Total: -30.97 -7.01 -37.99 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000717786055.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.855 kcal
(2) G-P(sol) polarization free energy of solvation -30.971 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.884 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.869 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds