Wall clock time and date at job start Mon Mar 30 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47366 * 337.90982 * 3 2 1 5 5 H 1.09004 * 109.46829 * 55.00003 * 4 3 2 6 6 C 1.53000 * 109.47255 * 175.00127 * 4 3 2 7 7 O 1.42902 * 109.46925 * 54.99953 * 6 4 3 8 8 N 1.46897 * 109.47288 * 295.00108 * 4 3 2 9 9 C 1.46899 * 111.00373 * 154.99777 * 8 4 3 10 10 H 1.09004 * 109.46746 * 34.99998 * 9 8 4 11 11 C 1.50702 * 109.47020 * 275.00318 * 9 8 4 12 12 H 1.07994 * 120.00225 * 305.06941 * 11 9 8 13 13 C 1.37882 * 120.00067 * 125.07008 * 11 9 8 14 14 N 1.31510 * 120.00398 * 172.92289 * 13 11 9 15 15 Si 1.86801 * 119.99906 * 352.91891 * 13 11 9 16 16 H 1.48498 * 109.47295 * 85.60553 * 15 13 11 17 17 H 1.48500 * 109.47442 * 205.61113 * 15 13 11 18 18 H 1.48506 * 109.47086 * 325.60913 * 15 13 11 19 19 C 1.50693 * 109.47222 * 155.00120 * 9 8 4 20 20 C 1.38236 * 120.00264 * 45.79046 * 19 9 8 21 21 C 1.38230 * 120.00149 * 179.78837 * 20 19 9 22 22 C 1.38236 * 119.99849 * 0.43596 * 21 20 19 23 23 C 1.38233 * 120.00234 * 359.81857 * 22 21 20 24 24 C 1.38235 * 119.99617 * 226.05910 * 19 9 8 25 25 H 4.44647 * 5.63292 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.46862 * 217.91421 * 3 2 1 27 27 H 1.09001 * 109.47092 * 97.91296 * 3 2 1 28 28 H 1.08998 * 109.47231 * 175.00470 * 6 4 3 29 29 H 1.09000 * 109.46822 * 295.00318 * 6 4 3 30 30 H 0.96706 * 113.99624 * 179.97438 * 7 6 4 31 31 H 1.00904 * 111.00000 * 278.95554 * 8 4 3 32 32 H 0.96995 * 120.00404 * 179.97438 * 14 13 11 33 33 H 1.08002 * 119.99549 * 359.97438 * 20 19 9 34 34 H 1.07998 * 120.00459 * 180.27023 * 21 20 19 35 35 H 1.08003 * 120.00132 * 179.83161 * 22 21 20 36 36 H 1.07997 * 120.00243 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.00263 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.3357 0.5425 5 1 2.7224 -2.1520 -0.0349 6 6 4.6815 -1.3840 0.4267 7 8 5.2454 -0.2485 1.0860 8 7 2.7682 -1.4725 1.9525 9 6 2.6900 -2.8866 2.3424 10 1 3.4598 -3.4515 1.8166 11 6 1.3323 -3.4326 1.9824 12 1 0.4402 -2.9440 2.3452 13 6 1.2290 -4.5561 1.1897 14 7 0.0550 -5.1140 0.9895 15 14 2.7566 -5.2856 0.3999 16 1 3.4147 -6.2110 1.3568 17 1 2.3724 -6.0314 -0.8253 18 1 3.6973 -4.1941 0.0404 19 6 2.9031 -3.0104 3.8290 20 6 2.2453 -2.1571 4.6951 21 6 2.4374 -2.2735 6.0590 22 6 3.2945 -3.2374 6.5564 23 6 3.9564 -4.0872 5.6902 24 6 3.7609 -3.9736 4.3263 25 1 -1.0497 -0.0003 0.0003 26 1 3.0089 0.8116 0.6315 27 1 3.0093 0.1423 -1.0179 28 1 5.0527 -2.2965 0.8932 29 1 4.9665 -1.3719 -0.6253 30 1 6.2113 -0.2139 1.0528 31 1 3.4018 -0.9664 2.5529 32 1 -0.0177 -5.9041 0.4316 33 1 1.5788 -1.4015 4.3061 34 1 1.9201 -1.6098 6.7359 35 1 3.4468 -3.3266 7.6219 36 1 4.6263 -4.8399 6.0788 37 1 4.2779 -4.6377 3.6495 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717786055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:40 Heat of formation + Delta-G solvation = 7.738389 kcal Electronic energy + Delta-G solvation = -19415.388396 eV Core-core repulsion = 16544.099287 eV Total energy + Delta-G solvation = -2871.289109 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30497 -38.96348 -36.58959 -35.18296 -34.02219 -32.45724 -31.63456 -30.05448 -28.26476 -27.33911 -24.40378 -23.32835 -21.78607 -21.40124 -19.25283 -18.94477 -18.16886 -17.62859 -16.64379 -16.29031 -16.14954 -15.72794 -15.54353 -15.05464 -14.78338 -14.69677 -14.18206 -14.11858 -13.93281 -13.65687 -13.15872 -12.92762 -12.77502 -12.66900 -12.24599 -11.94525 -11.83046 -11.62335 -11.43623 -11.06118 -10.84941 -10.76899 -10.70770 -9.66928 -9.40639 -8.91546 -8.28268 -6.28418 0.63501 0.68417 1.24789 1.27538 1.36246 2.12337 2.15646 2.28997 2.92129 3.18750 3.32811 3.67831 3.72211 4.13450 4.15709 4.22138 4.26048 4.35421 4.42783 4.46646 4.60637 4.64717 4.81947 4.86750 4.89821 4.93655 5.20413 5.25553 5.33772 5.36965 5.55565 5.71142 5.75011 5.94734 6.15531 6.29479 6.54556 6.74723 6.90990 6.98536 7.01076 7.34242 8.89247 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.009450 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.115670 B = 2962.338871 C = 3638.718352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.178 4.178 3 C 0.013 3.987 4 C 0.093 3.907 5 H 0.064 0.936 6 C 0.055 3.945 7 O -0.573 6.573 8 N -0.671 5.671 9 C 0.224 3.776 10 H 0.016 0.984 11 C -0.469 4.469 12 H 0.026 0.974 13 C 0.014 3.986 14 N -0.945 5.945 15 Si 0.926 3.074 16 H -0.267 1.267 17 H -0.290 1.290 18 H -0.238 1.238 19 C -0.071 4.071 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.137 4.137 23 C -0.121 4.121 24 C -0.149 4.149 25 H 0.224 0.776 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.396 0.604 31 H 0.332 0.668 32 H 0.263 0.737 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.910 6.915 2.879 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.178 4.178 3 C -0.024 4.024 4 C -0.017 4.017 5 H 0.082 0.918 6 C -0.025 4.025 7 O -0.381 6.381 8 N -0.302 5.302 9 C 0.116 3.884 10 H 0.033 0.967 11 C -0.508 4.508 12 H 0.045 0.955 13 C -0.184 4.184 14 N -0.586 5.586 15 Si 0.750 3.250 16 H -0.192 1.192 17 H -0.216 1.216 18 H -0.162 1.162 19 C -0.072 4.072 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.155 4.155 23 C -0.139 4.139 24 C -0.168 4.168 25 H 0.241 0.759 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.245 0.755 31 H 0.151 0.849 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.531 6.963 2.770 13.752 hybrid contribution 1.005 -1.209 -0.743 1.739 sum 12.536 5.754 2.027 13.942 Atomic orbital electron populations 1.25276 0.96839 1.01490 1.02487 1.23489 0.95392 0.99784 0.99116 1.18672 0.83787 0.97866 1.02079 1.21546 0.91475 0.97343 0.91377 0.91763 1.22775 0.94267 0.88170 0.97261 1.86423 1.26979 1.45378 1.79300 1.60689 1.54969 1.12337 1.02215 1.18483 0.94305 0.86897 0.88676 0.96677 1.20898 0.91654 1.09071 1.29143 0.95520 1.25879 0.98627 0.96958 0.96908 1.70050 1.25944 1.22170 1.40391 0.86089 0.80846 0.79396 0.78633 1.19194 1.21614 1.16221 1.20438 0.94604 0.95264 0.96889 1.20982 0.99283 0.99601 0.93741 1.21410 0.98948 0.99345 0.94660 1.21358 0.97568 0.95923 1.00624 1.21330 1.00361 0.99800 0.92415 1.21145 1.00036 0.98966 0.96657 0.75920 0.88647 0.87971 0.94591 0.91166 0.75465 0.84872 0.92757 0.87524 0.84361 0.83338 0.83905 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.60 19.25 74.32 1.43 -8.17 16 2 C -0.18 -7.00 13.06 31.12 0.41 -6.60 16 3 C 0.01 0.42 5.11 28.79 0.15 0.57 16 4 C 0.09 3.41 2.19 44.92 0.10 3.51 16 5 H 0.06 2.78 6.62 -2.39 -0.02 2.76 16 6 C 0.05 1.54 6.69 71.98 0.48 2.02 16 7 O -0.57 -13.68 12.24 -148.98 -1.82 -15.51 16 8 N -0.67 -27.63 5.29 -477.18 -2.52 -30.15 16 9 C 0.22 10.33 1.98 43.42 0.09 10.42 16 10 H 0.02 0.71 3.43 -2.38 -0.01 0.70 16 11 C -0.47 -26.81 8.75 25.60 0.22 -26.59 16 12 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 13 C 0.01 0.79 5.47 84.66 0.46 1.26 16 14 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 15 Si 0.93 43.13 26.50 68.60 1.82 44.95 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 18 H -0.24 -9.85 6.22 99.48 0.62 -9.24 16 19 C -0.07 -3.02 4.65 -19.87 -0.09 -3.11 16 20 C -0.12 -4.69 9.08 22.27 0.20 -4.49 16 21 C -0.13 -4.06 10.05 22.27 0.22 -3.84 16 22 C -0.14 -3.93 10.05 22.27 0.22 -3.70 16 23 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 24 C -0.15 -5.67 9.67 22.27 0.22 -5.45 16 25 H 0.22 7.45 7.80 -4.43 -0.03 7.42 16 26 H 0.10 2.97 7.73 -2.39 -0.02 2.95 16 27 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.04 1.08 7.38 -2.39 -0.02 1.06 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.40 5.43 9.12 -74.05 -0.68 4.75 16 31 H 0.33 12.77 7.35 -89.69 -0.66 12.11 16 32 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.11 4.54 7.90 -2.91 -0.02 4.51 16 34 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.11 3.99 7.99 -2.91 -0.02 3.97 16 Total: -1.00 -71.43 316.60 1.76 -69.67 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.35 Total: 37.90 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 4.33 Total: -47.68 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -2.22 Total: -89.33 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.82 Total: -15.51 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.82 Total: 44.95 kcal Total: -71.43 1.76 -69.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717786055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.409 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds